Trimin1|348517|estExt_Genemark1.C_Ctg_250135 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|348517
Unique Name	Trimin1\|348517\|estExt_Genemark1.C_Ctg_250135
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	274

Homology

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BLAST of jgi.p|Trimin1|348517 vs. uniprot
Match: A0A835YZX8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZX8_9STRA)

HSP 1 Score: 429 bits (1103), Expect = 4.260e-150
Identity = 273/273 (100.00%), Postives = 273/273 (100.00%), Query Frame = 0

Query:    1 MMCRFPALLVVLAAMSWCGVVAFVPAASLGHRQQRTSAVAARVAPPSNTWSESLEAVAARLDDFIWGRHWSDNAAATADDGTAQALDEELLRRRSIRGAVVETRRRCLALEAELTSLLRIAGARPSRTELGAIHRAAAELEAVAAAEXXXXXXXXXXXXXXSPRAGPTTGGGGGAWAALYAEDGVGGARGGRLLLRALGGGGGLAGDVAAAERGAADRVTYVSQNLRIARGPCGELSVYRRSAXXXXXXXXXXXXXXXXXXXXXEAEQWFWPL 273
            MMCRFPALLVVLAAMSWCGVVAFVPAASLGHRQQRTSAVAARVAPPSNTWSESLEAVAARLDDFIWGRHWSDNAAATADDGTAQALDEELLRRRSIRGAVVETRRRCLALEAELTSLLRIAGARPSRTELGAIHRAAAELEAVAAAEXXXXXXXXXXXXXXSPRAGPTTGGGGGAWAALYAEDGVGGARGGRLLLRALGGGGGLAGDVAAAERGAADRVTYVSQNLRIARGPCGELSVYRRSAXXXXXXXXXXXXXXXXXXXXXEAEQWFWPL
Sbjct:    1 MMCRFPALLVVLAAMSWCGVVAFVPAASLGHRQQRTSAVAARVAPPSNTWSESLEAVAARLDDFIWGRHWSDNAAATADDGTAQALDEELLRRRSIRGAVVETRRRCLALEAELTSLLRIAGARPSRTELGAIHRAAAELEAVAAAEXXXXXXXXXXXXXXSPRAGPTTGGGGGAWAALYAEDGVGGARGGRLLLRALGGGGGLAGDVAAAERGAADRVTYVSQNLRIARGPCGELSVYRRSAXXXXXXXXXXXXXXXXXXXXXEAEQWFWPL 273

[Close]

BLAST of jgi.p|Trimin1|348517 vs. uniprot
Match: A0A835Z5I7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5I7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.640e-29
Identity = 109/259 (42.08%), Postives = 131/259 (50.58%), Query Frame = 0

Query:   22 AFVPAASLGHRQQRTSAVAARVAPPSNT-----WSESLEAVAARLDDFIWGRHW--SDNAAATADDGTAQALDEELLRRRSIRGAVVETRRRCLALEAELTSLLRIAGARPSRTELGAIHRAAAELEAVAAAEXXXXXXXXXXXXXXSPRAGPTTGGGGGAWAALYAEDGVGGARGGRLLLRALGGGGGLAGDVAAAERGAADRVTYVSQNLRIARGPCGELSVYRRSAXXXXXXXXXXXXXXXXXXXXXEAEQWFWPL 273
            AF PAA  G         A+  A  + T     W+ S+E +A+RLD  IWG     + +AAA A   T  A+DEE+LRRR IR ++VE RRR L LEAEL SLLRIAG +PS+ EL  +HR + ELEA+ AA XXXXXXXX          G     GGGAW  L+AE    G+    +L                A  G+   VTY SQNLRI RG  GEL V+RR                         EQWFWPL
Sbjct:   20 AFTPAAPNGPAGNNRHIAASSTAQATPTHQLSSWASSIENIASRLDAIIWGGRTGTTSDAAAIAATATPHAVDEEVLRRRGIRHSIVEKRRRSLELEAELQSLLRIAGGKPSKMELNEVHRLSGELEALQAAXXXXXXXXXEAGV----HIGNAARAGGGAWRLLFAETARSGSSASGVLXXXXXXXXXXXXXXXXAI-GSCAVVTYASQNLRIERGTNGELRVFRR-----LLAAPECACADGAEQCCSSGEQWFWPL 268

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348517 vs. uniprot

BLAST of jgi.p|Trimin1|348517 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835YZX8_9STRA	4.260e-150	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835Z5I7_9STRA	6.640e-29	42.08	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_25	contig	Contig_25:1093743..1095127 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348517	mRNA_6717	Tribonema minus UTEX_B_3156	mRNA	Contig_25 1093183..1095441 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|348517|estExt_Genemark1.C_Ctg_250135 ID=Trimin1|348517|estExt_Genemark1.C_Ctg_250135|Name=jgi.p|Trimin1|348517|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=274bp
MMCRFPALLVVLAAMSWCGVVAFVPAASLGHRQQRTSAVAARVAPPSNTW
SESLEAVAARLDDFIWGRHWSDNAAATADDGTAQALDEELLRRRSIRGAV
VETRRRCLALEAELTSLLRIAGARPSRTELGAIHRAAAELEAVAAAEATA
ASAAVEAGVRASPRAGPTTGGGGGAWAALYAEDGVGGARGGRLLLRALGG
GGGLAGDVAAAERGAADRVTYVSQNLRIARGPCGELSVYRRSAAAAAAAA
AAPAGAAEEGGEQEEAEQWFWPL*