mRNA_6611 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348460
Unique NamemRNA_6611
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A835Z3G0_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G0_9STRA)

HSP 1 Score: 879 bits (2272), Expect = 0.000e+0
Identity = 503/503 (100.00%), Postives = 503/503 (100.00%), Query Frame = 1
Query:    1 MGLEGETATYFKNAYDQLDDCKIQEDDNEQVLNQMVVWALLAFATARNGTTPLSSSTTXXXXXXTLTPMVRYEQPETLHEIDTSSDPAYASDSMASTLSPGSTASSDDSGEPAAFAEATPADSGHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETYMAEEGLPQQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVEPHAPTAMVL 1509
            MGLEGETATYFKNAYDQLDDCKIQEDDNEQVLNQMVVWALLAFATARNGTTPLSSSTTXXXXXXTLTPMVRYEQPETLHEIDTSSDPAYASDSMASTLSPGSTASSDDSGEPAAFAEATPADSGHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETYMAEEGLPQQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVEPHAPTAMVL
Sbjct:    1 MGLEGETATYFKNAYDQLDDCKIQEDDNEQVLNQMVVWALLAFATARNGTTPLSSSTTXXXXXXTLTPMVRYEQPETLHEIDTSSDPAYASDSMASTLSPGSTASSDDSGEPAAFAEATPADSGHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETYMAEEGLPQQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVEPHAPTAMVL 503          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A835YHB0_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHB0_9STRA)

HSP 1 Score: 518 bits (1335), Expect = 5.790e-177
Identity = 268/382 (70.16%), Postives = 306/382 (80.10%), Query Frame = 1
Query:  232 LHEIDTSSDP---AYASDSMASTLSPGSTASSDDSGEPAAFAEATPADSGH----KTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETYMAEEGLPQQ 1356
            L  +  +SDP    Y SDSM S          D    P   +EA   D+G     K VLVTGGAGFVG +VA+ALLARGDDV+IVDEVNDYYD  +KR++LA+LV+RYG+ R +++EGD+ D  F+ A+F  H P+WIVHMAARAGVRPSIQDPF+YVHSN+ GTTRLLELA +HGC+SFAFASSSSVYG     +FSE D VD PVSPYAA+KKACEL+AHTY HLY LN+AALRFFTVYGPRGRPDMAP+KFI AV  GRE+QQ+GDGSTSRDYTYI DIVDGV+RALD PLGYQ+YNLGRGEPTRLSRFI +VE  VGR A+IRVCPEQPGDVPRTCADISKARRLLGY+P+VSFE+GIA TVAWYK TYM     PQQ
Sbjct:   13 LSAVSNNSDPIEDVYVSDSMGS---------EDSICTPDTLSEAGDDDAGMFEDPKLVLVTGGAGFVGSSVADALLARGDDVIIVDEVNDYYDTTIKRSNLASLVSRYGSERCKVYEGDICDVPFITAIFEEHKPEWIVHMAARAGVRPSIQDPFIYVHSNIEGTTRLLELARQHGCKSFAFASSSSVYGGSDKSLFSETDLVDHPVSPYAASKKACELLAHTYHHLYNLNIAALRFFTVYGPRGRPDMAPFKFIDAVARGREMQQFGDGSTSRDYTYITDIVDGVLRALDTPLGYQIYNLGRGEPTRLSRFINLVEANVGRKAIIRVCPEQPGDVPRTCADISKARRLLGYDPKVSFEDGIAATVAWYKATYMQ----PQQ 381          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A6H5L121_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L121_9PHAE)

HSP 1 Score: 470 bits (1209), Expect = 1.770e-156
Identity = 231/326 (70.86%), Postives = 263/326 (80.67%), Query Frame = 1
Query:  343 FAEATPADSGHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYK 1320
            FA   P  +G KTVLVTG AGF+G  VA+ LLARGDDV+IVDEVN YYDVR KR+++A L+ +YG  RV+ FEGD+ DA F+  +F     +W+VHMAARAGVRPSI+DPFVYVHSNV  TTRLLEL+  HG +SF FASSSSVYG    EVFSE D VD PVSPYAATKK+CELMAHTY+HLYGLN+A LRFFTVYGPRGRPDMAPYKFI  V  G+EI Q+GDGSTSRDYTYI DIVDGVVR+LDRP GYQ+YNLG G P  LS FI +VE+ VG  A IRVCPEQPGDVPRTCADISKAR +LGY P V+F +GI +TV WY+
Sbjct:   77 FATEVPPHTGKKTVLVTGAAGFIGSWVADTLLARGDDVVIVDEVNSYYDVRTKRSNIAMLLEKYGPNRVKFFEGDLCDAPFITRIFETEGVEWVVHMAARAGVRPSIEDPFVYVHSNVEATTRLLELSRLHGVKSFVFASSSSVYGGSQKEVFSEKDVVDFPVSPYAATKKSCELMAHTYSHLYGLNIAGLRFFTVYGPRGRPDMAPYKFIDLVARGQEIMQFGDGSTSRDYTYISDIVDGVVRSLDRPAGYQIYNLGNGSPVSLSSFIKLVEKSVGTPAKIRVCPEQPGDVPRTCADISKARAMLGYNPSVAFADGIGKTVDWYQ 402          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A6U1AQP1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1AQP1_9STRA)

HSP 1 Score: 441 bits (1135), Expect = 3.120e-147
Identity = 224/333 (67.27%), Postives = 258/333 (77.48%), Query Frame = 1
Query:  349 EATPADSGHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETY--MAEE 1341
            E  PA S  KTVLVTG AGF+G  VAE LLARGD V+ VDEVNDYYDVR+KRA++ AL  R+   +   +EGD+ D AF+G +F    P+W+VH+AARAGVRPSIQDPFVY+ SNV+ TTRLLELA  +G   F FASSSSVYG     +FSE D VD PVSPYAATKK+CELM +TY HLYGL+VA LRFFTVYGPRGRPDMAP+KF+  V  G EIQQYGDGS+SRDYTYI+DIVDGVVR+LDRPLGYQ+YNLG G P  L  FI IVE   G+ A IR+ P+QPGDVPRT A+I+KAR+LLGYEP+V F EGI R V WY   Y  MAEE
Sbjct:   17 ECKPAAS-FKTVLVTGAAGFIGSHVAEVLLARGDRVIAVDEVNDYYDVRIKRANIQALATRFSVDQFCFYEGDLCDEAFIGQIFERERPRWVVHLAARAGVRPSIQDPFVYIQSNVVATTRLLELARTYGNEHFVFASSSSVYGGSKQSLFSETDVVDYPVSPYAATKKSCELMGYTYHHLYGLHVAGLRFFTVYGPRGRPDMAPFKFVDRVVRGAEIQQYGDGSSSRDYTYIDDIVDGVVRSLDRPLGYQIYNLGNGNPVGLRDFIRIVEESTGKKATIRILPDQPGDVPRTAANINKARQLLGYEPKVPFREGIERLVKWYTTEYQTMAEE 348          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A4D9DEP6_9STRA (NAD(P)-bd_dom domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEP6_9STRA)

HSP 1 Score: 446 bits (1148), Expect = 4.820e-147
Identity = 222/316 (70.25%), Postives = 260/316 (82.28%), Query Frame = 1
Query:  370 GHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWY 1317
            G K VLVTGGAGFVG  VA+ LL+RGD V++VDE NDYYD  +KRA++A L+A++G+AR+R+ E D+ DA  M  LF    P+ +VHMAARAGVRPSI DPF+Y+HSN+LGTTRLLELA  HG   F +ASSSSVYG  + E F EDD VD PVSPYAATKKACELM HTY  LY +NV  LRFFTVYGPRGRPDMAP+KF+  V  G EIQQ+GDGS+SRDYTYI+DIVDGVVRALDRPLGYQ++NLG G P RLS FI +VE+ VG+AAVI+V P+QPGDVPRTCA+ISKA+ LLGY+P+VSFEEGIARTV WY
Sbjct:  150 GGKKVLVTGGAGFVGSHVADHLLSRGDAVVVVDEFNDYYDTSLKRANVAHLLAKHGSARLRVVEADICDAHAMEQLFITERPRHVVHMAARAGVRPSIDDPFIYIHSNMLGTTRLLELARIHGNDCFVWASSSSVYGGSSLEEFGEDDYVDNPVSPYAATKKACELMTHTYHSLYKMNVTGLRFFTVYGPRGRPDMAPFKFVDRVSRGLEIQQFGDGSSSRDYTYIDDIVDGVVRALDRPLGYQIFNLGNGSPYRLSDFIRLVEKNVGKAAVIKVLPDQPGDVPRTCANISKAQELLGYQPKVSFEEGIARTVEWY 465          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A7S1ZRD9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZRD9_TRICV)

HSP 1 Score: 436 bits (1120), Expect = 1.350e-144
Identity = 209/320 (65.31%), Postives = 258/320 (80.62%), Query Frame = 1
Query:  370 GHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETY 1329
            GHK VLVTGGAGF+G  VA+ LL RGDDV+IVDE+NDYYDV+VK ++L  L+ +YG  RV I+ GD+ D  FM  +F A  P+W+ HMAARAGVRPSIQDP+VY+HSN+ GTT+L+EL+ + G ++F FASSSSVYG   +  FSED++VD PVSPYAA+KKACEL+A+TY HLY LNV+ALRFFTVYGPRGRPDMAP+KFI  +  G EIQQ+GDGS+SRDYTYI DIVDG+VRA+DRP  Y+++NLG+G  T L  FI IVE+  G+AA IR  P+QPGDVP TCAD+ KA+RLLGY  +VSF+EGI RT  WY+E +
Sbjct:   51 GHKKVLVTGGAGFIGSHVADYLLERGDDVVIVDEINDYYDVKVKESNLDLLLKKYGKERVSIYVGDICDEEFMLRVFEAKRPEWVCHMAARAGVRPSIQDPYVYIHSNIRGTTQLMELSHKFGVKNFVFASSSSVYGGSKSTYFSEDESVDNPVSPYAASKKACELLAYTYHHLYKLNVSALRFFTVYGPRGRPDMAPFKFIDRISRGMEIQQFGDGSSSRDYTYISDIVDGIVRAIDRPHPYEIFNLGKGSGTSLKEFINIVEKHTGKAAKIRQLPDQPGDVPYTCADVCKAQRLLGYRAKVSFDEGIRRTAKWYQEAF 370          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A7S2BVB9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BVB9_9STRA)

HSP 1 Score: 434 bits (1115), Expect = 4.700e-144
Identity = 217/329 (65.96%), Postives = 255/329 (77.51%), Query Frame = 1
Query:  343 FAEATPADSGHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETY 1329
            F E     +  K VLVTGGAGF+G  VAE LL RGDDV+I+DEVNDYYDVR+KR +L+ L +R+  +R+R +EGD+ADA F+  +F A  P+W+VH+AARAGVRPSI+DPFVY+HSNV GTTRLLELA R+G   F FASSSSVYG    + FSE DAVD PVSPYAATKK CEL+A+TY  LYG++VA LRFFTVYGPRGRPDMAP+KF+  V  G  IQQYGDGS+SRDYTYI+DIVDGVVR+LDRP GYQ+YNLG G P  L  FI  VE+C  R A I V P+QPGDVPRT A+ISKA  LLGY+P+V F +GI R V WY   Y
Sbjct:   52 FLEPVSPHTDKKKVLVTGGAGFIGSHVAERLLHRGDDVIIIDEVNDYYDVRLKRRNLSLLRSRWPESRLRYYEGDIADAKFVERVFEAERPKWVVHLAARAGVRPSIEDPFVYIHSNVHGTTRLLELAQRYGNEHFVFASSSSVYGGSKLDTFSETDAVDNPVSPYAATKKMCELLAYTYHSLYGIDVAGLRFFTVYGPRGRPDMAPFKFVDRVSNGVAIQQYGDGSSSRDYTYIDDIVDGVVRSLDRPCGYQIYNLGNGNPVSLRDFIRTVEQCTRRKANIEVMPDQPGDVPRTAANISKASMLLGYQPKVQFSDGIQRLVDWYTSEY 380          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A7S4RAP2_9STRA (Hypothetical protein n=3 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RAP2_9STRA)

HSP 1 Score: 436 bits (1121), Expect = 1.740e-143
Identity = 211/323 (65.33%), Postives = 257/323 (79.57%), Query Frame = 1
Query:  370 GHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETYMAE 1338
            G+K VL+TGGAGF+G  VAE LL RGDDV+IVDE+NDYYDVR+K ++L+ L+  YG  RV I  GD+ D AFM  +F    P+W+ HMAARAGVRPSIQDPFVY+HSN+ GTTRL+EL+ ++G ++F FASSSSVYG   +  FSED++VD PVSPYAATKKACEL+A+TY HLY LN++ALRFFTVYGPRGRPDMAP+KFI  V  G EIQQ+GDGS+SRDYTYI DIVDGVVRA+DRP  Y++YNLG+G+ T L  FI +VE+  G+ A+IR  P+Q GDVP TCAD+SKA  LLGY  ++SFEEGI RT  WY+  Y  E
Sbjct:  138 GYKKVLITGGAGFIGSHVAECLLERGDDVVIVDEMNDYYDVRIKESNLSLLLDMYGKERVSIHRGDMCDEAFMQRVFEETRPEWVCHMAARAGVRPSIQDPFVYIHSNIKGTTRLMELSHQYGVQNFVFASSSSVYGGSKSTFFSEDESVDNPVSPYAATKKACELLAYTYHHLYKLNISALRFFTVYGPRGRPDMAPFKFIDRVSRGLEIQQFGDGSSSRDYTYITDIVDGVVRAIDRPYPYEIYNLGKGDGTSLKEFISLVEKYTGKKAIIRQLPDQAGDVPYTCADVSKADCLLGYRAKISFEEGIRRTAEWYRAAYEKE 460          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A7S2IJC0_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJC0_9STRA)

HSP 1 Score: 430 bits (1105), Expect = 1.120e-141
Identity = 208/320 (65.00%), Postives = 254/320 (79.38%), Query Frame = 1
Query:  370 GHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETY 1329
            G+K VLVTGGAGF+G  VAE LL RGDDV+IVDE+NDYYDVR+K ++L+ L+  YG  RV I+ GD+ D  FM  +F    PQW+ HMAARAGVRPSIQDPFVY+HSN+  TTRL+EL+ ++G ++F FASSSSVYG   +  FSE+++VD PVSPYAATKKACEL+A+TY HLY LNV+ALRFFTVYGPRGRPDMAP+KFI  +  G EIQQ+GDGS+SRDYTYI DIVDGVVRA+DRP  Y++YNLG+G  T L  FI +VE+   + A+I+  P+QPGDVP TCAD+SKA  LLGY  +V FEEGI RT  WY++ Y
Sbjct:   90 GYKKVLVTGGAGFIGSHVAEHLLERGDDVVIVDEMNDYYDVRIKESNLSLLLDTYGKQRVSIYRGDLCDDDFMTRVFEETMPQWVCHMAARAGVRPSIQDPFVYIHSNIKATTRLMELSHKYGVKNFVFASSSSVYGGSKSTFFSEEESVDCPVSPYAATKKACELLAYTYHHLYKLNVSALRFFTVYGPRGRPDMAPFKFIDRISRGLEIQQFGDGSSSRDYTYITDIVDGVVRAIDRPYPYEIYNLGKGSGTSLREFISLVEKHTEKKAIIKQLPDQPGDVPYTCADVSKAACLLGYRAKVPFEEGIRRTAEWYRDAY 409          
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Match: A0A7S3V7J1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V7J1_9STRA)

HSP 1 Score: 426 bits (1095), Expect = 9.240e-141
Identity = 212/333 (63.66%), Postives = 263/333 (78.98%), Query Frame = 1
Query:  370 GHKTVLVTGGAGFVGGAVAEALLARGDDVLIVDEVNDYYDVRVKRASLAALVARYGA--ARVRIFEGDVADAAFMGALFAAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSFAFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGLNVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIEDIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCPEQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETYMAEEGLPQQPQ 1362
            G+K VLVTGGAGF+G  VAE LL RGDDV+IVDEVNDYYDV++K ++L  L  +      R+ I++GD+ D AFM  +F    PQW+ HMAARAGVRPSIQDP+VY+HSN+ GTT L+EL+ + G ++F FASSSSVYG   +  FSED+ VD PVSPYAA+KKACEL+++TY HLY LNV+ALRFFTVYGPRGRPDMAP+KFI  V  G E+QQ+GDGS+SRDYTYI DIVDG+VRA+DRP  Y+V+NLG+G  T L +FI +V++ VG+ A IRV P+QPGDVP TCAD+SKA RLLGY+  V FEEGI RT  WYKE+Y A++ +P  P+
Sbjct:   54 GYKKVLVTGGAGFIGSNVAEFLLERGDDVVIVDEVNDYYDVKIKNSNLELLRNKVNGDEKRLSIYKGDICDEAFMLEVFEKERPQWVCHMAARAGVRPSIQDPYVYIHSNIRGTTNLMELSHKFGVKNFVFASSSSVYGGSTSTFFSEDENVDNPVSPYAASKKACELLSYTYHHLYNLNVSALRFFTVYGPRGRPDMAPFKFIDRVSRGLELQQFGDGSSSRDYTYISDIVDGIVRAVDRPHPYEVFNLGKGNGTSLKQFISLVQKHVGKKANIRVMPDQPGDVPYTCADVSKAYRLLGYKACVPFEEGIRRTAEWYKESY-AKKQIPVCPE 385          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348460 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3G0_9STRA0.000e+0100.00NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
A0A835YHB0_9STRA5.790e-17770.16NAD(P)-bd_dom domain-containing protein n=1 Tax=Tr... [more]
A0A6H5L121_9PHAE1.770e-15670.86NAD(P)-bd_dom domain-containing protein n=2 Tax=Ec... [more]
A0A6U1AQP1_9STRA3.120e-14767.27Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A4D9DEP6_9STRA4.820e-14770.25NAD(P)-bd_dom domain-containing protein n=3 Tax=Mo... [more]
A0A7S1ZRD9_TRICV1.350e-14465.31Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2BVB9_9STRA4.700e-14465.96Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4RAP2_9STRA1.740e-14365.33Hypothetical protein n=3 Tax=Ditylum brightwellii ... [more]
A0A7S2IJC0_9STRA1.120e-14165.00Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3V7J1_9STRA9.240e-14163.66Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:198751..203746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348460|estExt_Genemark1.C_Ctg_250014
BRITEko00000,ko00001,ko01000
KEGG rclassRC00289
KEGG ReactionR01385
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG koko:K08679
EC5.1.3.6
Descriptionracemase and epimerase activity, acting on carbohydrates and derivatives
COG categoryM
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1087@1|root,KOG1371@2759|Eukaryota
Evalue1.1e-158
Seed ortholog2880.D7FK24
Hectar predicted targeting categoryother localisation
TranscriptId348782
TrackFilteredModels1
ProteinId348460
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348460gene_6611Tribonema minus UTEX_B_3156 geneContig_25 198751..203746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348460Trimin1|348460|estExt_Genemark1.C_Ctg_250014Tribonema minus UTEX_B_3156 polypeptideContig_25 198751..203236 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6611_1exon_6611_1Tribonema minus UTEX_B_3156 exonContig_25 198751..198762 +
exon_6611_2exon_6611_2Tribonema minus UTEX_B_3156 exonContig_25 198838..198915 +
exon_6611_3exon_6611_3Tribonema minus UTEX_B_3156 exonContig_25 199041..199094 +
exon_6611_4exon_6611_4Tribonema minus UTEX_B_3156 exonContig_25 201869..203746 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6611CDS_6611Tribonema minus UTEX_B_3156 CDSContig_25 198751..198762 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6611UTR3_6611Tribonema minus UTEX_B_3156 three_prime_UTRContig_25 203237..203746 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6611 ID=mRNA_6611|Name=jgi.p|Trimin1|348460|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2022bp|location=Sequence derived from alignment at Contig_25:198751..203746+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCCTCGAGGGCGAAACCGCAACCTACTTCAAAAACGCCTACGACCA
ACTGGATGACTGCAAAATCCAGGAGGACGACAATGAGCAGGTGCTGAATC
AGATGGTGGTGTGGGCGCTTCTGGCTTTCGCGACGGCGCGCAATGGCACC
ACCCCGCTCAGCAGCAGCACCACTACCGCCACCGCCACCATCACCCTCAC
GCCCATGGTGCGCTACGAGCAGCCCGAGACGCTGCACGAGATAGACACGT
CGTCCGACCCGGCGTACGCGTCCGACAGCATGGCGAGCACGCTGTCGCCC
GGCAGCACTGCCTCATCGGATGACAGCGGCGAGCCCGCGGCGTTCGCGGA
GGCGACCCCCGCCGATAGCGGCCACAAAACCGTCCTCGTCACCGGCGGCG
CGGGCTTCGTCGGTGGCGCCGTCGCGGAGGCGCTGCTCGCACGCGGCGAC
GACGTCCTCATTGTCGACGAGGTCAACGACTACTACGACGTGCGCGTGAA
GCGCGCGAGCCTCGCGGCGCTCGTCGCGCGCTACGGCGCGGCGCGCGTGC
GCATTTTCGAGGGCGACGTCGCGGACGCCGCCTTCATGGGCGCGCTCTTC
GCGGCGCACGCGCCGCAGTGGATCGTGCACATGGCCGCGCGCGCGGGCGT
GCGGCCAAGCATCCAGGACCCCTTCGTCTACGTGCACAGCAACGTGCTCG
GGACGACGCGCCTGCTCGAGCTCGCGGCGCGGCACGGCTGCCGCAGCTTC
GCGTTCGCGTCGTCGAGCAGCGTGTACGGTGAGGGCGCGGCGGAGGTCTT
CAGCGAGGACGACGCCGTAGACGCGCCCGTGTCCCCGTACGCCGCGACCA
AGAAGGCGTGCGAGCTCATGGCGCACACGTACGCGCACCTGTACGGGCTC
AACGTCGCCGCGCTGCGCTTCTTCACAGTCTACGGCCCGCGCGGGCGCCC
CGACATGGCGCCGTACAAGTTCATCGCGGCGGTGTGCGCGGGGCGCGAGA
TACAGCAGTACGGCGACGGCTCCACCTCGCGCGACTACACGTACATTGAG
GACATTGTCGACGGCGTCGTGCGCGCGCTTGACCGCCCACTCGGCTACCA
GGTGTACAACCTCGGGCGCGGCGAGCCGACGCGCCTGTCGCGCTTCATCG
GCATCGTGGAGCGCTGCGTGGGGCGCGCGGCGGTGATCCGCGTGTGCCCC
GAGCAGCCGGGGGATGTCCCGCGCACGTGCGCGGACATCTCCAAGGCGCG
CCGCCTGCTTGGCTACGAGCCGCGCGTGTCGTTCGAGGAGGGCATCGCGC
GCACCGTCGCATGGTACAAGGAGACGTACATGGCGGAGGAGGGGCTGCCG
CAGCAGCCGCAGCAGCAACAGGAGGTGGAGCAGCAGGCGGCGGCGGCGGC
GGCGACGGCGCTCATGACCGCGGCGGCGGCAAAAGCGCAGGCCCTGACGG
CGCTGCCGCCGGCCGCCGTTGTCGTCGTGGAGCCGCACGCCCCCACAGCC
ATGGTCCTGTAGTGCAGCGGCGATGTTGCATCGCCAGCGCAGTCTGTAGA
TCTAATAGCGGAGCGTTGGTAGCAGGGATAGGGTTTTAAAGACGGGCGAT
GGTCCCGCAATTTTCAAGGGGGCGGCTTTCCTCCTCCCCCCCCCTCTCCC
TCCCCGCCCCCCCCCCCCCCCTCGTTTCACTCCACGTTTCAGAGTGGCAG
CTGCACTTGGCGAGCGCCATCGGCTTTTTTGTAGGCTGTACATAGGAGAA
GCAGACTGCCCCTTTTTGTCACGGCGCGCATGCGCGCAGGCCATCAGCGG
CATAGTGCTCGGGCAGGGACTTCACACGCGTATACCTTACACAACTGATG
ATCAGGGGACGGCCTTTGCCCCCTGCGCTCACCACTAGAGCGGATGTGAT
ATTCGTCTCGTGGGAGGCGCTAGAGGACAGCGCGAGCTTGGCCTTCGCAG
CTTGCGCGCGCGCACGCGCTCTGGAATATGACAACACACACAGAAGTGAC
AATATTAAAGGACCACACCTCT
back to top

protein sequence of jgi.p|Trimin1|348460

>Trimin1|348460|estExt_Genemark1.C_Ctg_250014 ID=Trimin1|348460|estExt_Genemark1.C_Ctg_250014|Name=jgi.p|Trimin1|348460|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=504bp
MGLEGETATYFKNAYDQLDDCKIQEDDNEQVLNQMVVWALLAFATARNGT
TPLSSSTTTATATITLTPMVRYEQPETLHEIDTSSDPAYASDSMASTLSP
GSTASSDDSGEPAAFAEATPADSGHKTVLVTGGAGFVGGAVAEALLARGD
DVLIVDEVNDYYDVRVKRASLAALVARYGAARVRIFEGDVADAAFMGALF
AAHAPQWIVHMAARAGVRPSIQDPFVYVHSNVLGTTRLLELAARHGCRSF
AFASSSSVYGEGAAEVFSEDDAVDAPVSPYAATKKACELMAHTYAHLYGL
NVAALRFFTVYGPRGRPDMAPYKFIAAVCAGREIQQYGDGSTSRDYTYIE
DIVDGVVRALDRPLGYQVYNLGRGEPTRLSRFIGIVERCVGRAAVIRVCP
EQPGDVPRTCADISKARRLLGYEPRVSFEEGIARTVAWYKETYMAEEGLP
QQPQQQQEVEQQAAAAAATALMTAAAAKAQALTALPPAAVVVVEPHAPTA
MVL*
back to top

mRNA from alignment at Contig_25:198751..203746+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6611 ID=mRNA_6611|Name=jgi.p|Trimin1|348460|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4996bp|location=Sequence derived from alignment at Contig_25:198751..203746+ (Tribonema minus UTEX_B_3156 )
ATGGGCCTCGAGGTGAAGCCACAAAACCTGATCAACACTACCAACAAGGC AATGACGACCGGCAAAACACACGCAACCACGAAACAGGGCGAAACCGCAA CCTACTTCAAAAACGCCTACGACCAACTGGATGACTGCAAAATCCAGGAG GACGACAATGAGCAGGTGAGTAGTGGCGGTGCCCAACGATGGCCAGCCAC TCAGCAAGGCATCGGATTGCGTGCACACACTTCACGAACACGACTTGATG ACCCTATGCACTGTTCTGTCCCATGCCATTAACGATGCAGGTGCTGAATC AGATGGTGGTGTGGGCGCTTCTGGCTTTCGCGACGGCGCGCAATGTCAGA ATCAGCGCCGCGCAGTGATGGACAAGTATGCAGCATACAAGTCTATGTTG CGTGCTCTGCCAGCGCTGGCAGCTGCTGAAGCTAAGTCAACAGTGCCGTT GTCAGCAGCAGTAGACTTCCAGCATCTCGATCCAGCATCATTCAGCGTTA CGTAAATACGTTATTCATGCACATAATGGAGAGAGGCAAAATGAATGGGT TATGGGCATGCATAAACTGCAAGCAGCTGTCTCTGCACACCCGGTCCGGC GGTTCATGTGCAACTGGTTTGATGTAGAGCACATGGATAGCCCCGCCTGA TCCGAAAGATGAACCTTGGAATCACATACGGCACTTGAACACGTTACAGA TTTCTGTGTAGCCTCGCCGTGTTGCACTGTTGCTTCAATCGGGTCCATCG ACGCAGACAGTGACTGACTGAAGTCACGCTTCGGCATTGTAAAGCTCAGT TGCATGAATGTGAGCGCGGATGGGCTCAGCACTGATATCAGCGTTATGAG TGGAATGAGATCCCCGGCTGATCGTCTGAGCTGCATACCTGTGCCGGCAC TTCCACTTCTGTGTTGCACGTCTTCCAGCGGCTGGCTGTGTGCGTGGGCT TCATTGCAGCATTACGTGGGGAGCTGTAGTAGATTTAACAGACAAGCAGT TTCAAAAGCTGGCGTTCATGATCATGCTTACGTTTCACATACACCTACAG CCTTGCATGCAGTTTGTCAACCCTCAATTTGCAGTGACTCATTTTGCTCT TGCCGCTTGCTGCCCTGTGCTCTGCGTGCACACAGATGTGACCCACATGG CATAATAGACGCTGCTACTCCGAGGGCTAGTTGGTCATGGAATACATCGT TCAACTGGATCACAGGGGACTCATCATGGCAATGTACATAGTGTACACCT TACTTGCGAGGTATGTTTCTGTGACTGGGTGGTTGCCATACGTACATGCA TTCTGTCGACTGTCGCACCATGATGTGAATATGGAGCAGTTCTGATGCAT ATGGAAGAATCGTGGCATCTTTTTGAAATGTTGCTCTTGAAAGTTTTTGT ACCAGTGCGGAATTCTTAATTCGCAAAACTTTGGCCCTGCCTGTGGGAGT CACTCCGCTAGCATGTGTTCTGCTCAATGGATTCACCTATAACAAATGAA CACTCCACATTGTTTGCCCTTGCGGTGCCATTCCCAGCTGCTCTGCGCTC TTTGCTGCTATGCTTTCAATGCATTGACAACGATGTGCGTCTGCACAAAG CCAGCCTAGGTAGAGTGTATACTCGGCAGCGTGGATGGCATTTGCAGAAT TACATGGTGCCTCCCATCACCTCATTTGCATACAAAACTGTGTTTGCAGC GAGCGTACTTTGTGATGCAGTAGCCCGCATGTGGAATCACAGCTCCAAGC TGGCTGCAGCAGTGGCAGTAACTTTGCAAATAGGTACATGCAAGGGCAGA CTCAGGGACGTGACGCACGTGCTTCGGTGCAGCAGTGAGCTGAGATATCA GACGTCCACAGCACCACTGGCATGCGCAAAGCCCAGGATGCGCTGCCTGA ACCGCCCACCCCACAGCCCGCCGCTCTGCAGTCTACAACATCAAATCTGT GCATCATGTGCTGAAGTGTAATGCGCACATGCAGCAGTTCCCTTCTATCC CTGAGCGCTGAGGCACTGCAGCACTGCTCAGTGATTTTGCCCCCCTGTAT TTGCACGCTGGAGACGGGCCGGGCGAATCCTCCCGAAAGCAAATTCTTCC GCAGAAGAACACTCCGTGCTCAAATGACATCATGCATCTGTGCTGGCTTT GTGAGTGTGCTATTCTTTGCCGCGGTGCTGTGTCGCCGAGCTTCGTTGTG CTGCAGCTACCAAAGCACTCAACAACGGCCTTCATCTGGACAGGCGGACG CGGACACAGGTGCGTGGCTCTTTGCTGCAGATGAGTGCCAACGCACGCCA CGCACTCACGTAACGGAGCTGACACATGTTTCTGTTTGCCTGATGCTCTG CAGAACCACACACCACTCACAGCTACAGCGGCATCAGCATCACAAATACC TACTGACAAGTAGCATCAAGGCACAGACAGGAGCACCTGCTCACCACAGC ACACACACACTTGAGCAGCACAGGTGAGCTTTTTGCAAAGCGCGCTCAGC TTGGGTCTGCATGCTTTTGCCTCTGCACAGTGAAAGTATTTGCCAGGTCG GCGTAACGCTATTGTATGTCAGGCGTGGCAGCGACTTTGCAGGCTGCGGT ACTGCATTAGCGGCATCGTGAATGCGGAACTTCACATTATGTTGATATAG CATTTTCGTTTTCCGCGACCTGTGTTGTGGAGGTGCCTTTGTTTCTTGCC GACACTCGCAGCAGCTTCGTCGCAATGGGACTGGTAGTCCAAAGTGCTGG CTATATGTACTGACTCATGGAAACTTCGCAACTGTTCCTGGCACACATGC GCATGATCACAGATTCATGTGCAGCATCCGTTCTGACATACTTCTGACAT ACACGCGACGTTGATGACATGGCGTGCTCACCACAAGTTACCTGCTTACC TTCCTGCTGCCTTCACAGACCAACACAGGTCTCAACTAAGCCTTCTGACA GCGTTGAGCAGCGACTCCACCACCTGACCACTCGCCACTGCAGCAGCAGA GCAGGCAGGCAGCAGCAACAGCAGCCTAACCACCAGCCACACAAAAGCAG CCACCTCCACCACCACGGCCACTAGCCGCAACAGCAGCACCAGCAAGCGA CTCACAACGCGCACTCAGGGCACCACCCCGCTCAGCAGCAGCACCACTAC CGCCACCGCCACCATCACCCTCACGCCCATGGTGCGCTACGAGCAGCCCG AGACGCTGCACGAGATAGACACGTCGTCCGACCCGGCGTACGCGTCCGAC AGCATGGCGAGCACGCTGTCGCCCGGCAGCACTGCCTCATCGGATGACAG CGGCGAGCCCGCGGCGTTCGCGGAGGCGACCCCCGCCGATAGCGGCCACA AAACCGTCCTCGTCACCGGCGGCGCGGGCTTCGTCGGTGGCGCCGTCGCG GAGGCGCTGCTCGCACGCGGCGACGACGTCCTCATTGTCGACGAGGTCAA CGACTACTACGACGTGCGCGTGAAGCGCGCGAGCCTCGCGGCGCTCGTCG CGCGCTACGGCGCGGCGCGCGTGCGCATTTTCGAGGGCGACGTCGCGGAC GCCGCCTTCATGGGCGCGCTCTTCGCGGCGCACGCGCCGCAGTGGATCGT GCACATGGCCGCGCGCGCGGGCGTGCGGCCAAGCATCCAGGACCCCTTCG TCTACGTGCACAGCAACGTGCTCGGGACGACGCGCCTGCTCGAGCTCGCG GCGCGGCACGGCTGCCGCAGCTTCGCGTTCGCGTCGTCGAGCAGCGTGTA CGGTGAGGGCGCGGCGGAGGTCTTCAGCGAGGACGACGCCGTAGACGCGC CCGTGTCCCCGTACGCCGCGACCAAGAAGGCGTGCGAGCTCATGGCGCAC ACGTACGCGCACCTGTACGGGCTCAACGTCGCCGCGCTGCGCTTCTTCAC AGTCTACGGCCCGCGCGGGCGCCCCGACATGGCGCCGTACAAGTTCATCG CGGCGGTGTGCGCGGGGCGCGAGATACAGCAGTACGGCGACGGCTCCACC TCGCGCGACTACACGTACATTGAGGACATTGTCGACGGCGTCGTGCGCGC GCTTGACCGCCCACTCGGCTACCAGGTGTACAACCTCGGGCGCGGCGAGC CGACGCGCCTGTCGCGCTTCATCGGCATCGTGGAGCGCTGCGTGGGGCGC GCGGCGGTGATCCGCGTGTGCCCCGAGCAGCCGGGGGATGTCCCGCGCAC GTGCGCGGACATCTCCAAGGCGCGCCGCCTGCTTGGCTACGAGCCGCGCG TGTCGTTCGAGGAGGGCATCGCGCGCACCGTCGCATGGTACAAGGAGACG TACATGGCGGAGGAGGGGCTGCCGCAGCAGCCGCAGCAGCAACAGGAGGT GGAGCAGCAGGCGGCGGCGGCGGCGGCGACGGCGCTCATGACCGCGGCGG CGGCAAAAGCGCAGGCCCTGACGGCGCTGCCGCCGGCCGCCGTTGTCGTC GTGGAGCCGCACGCCCCCACAGCCATGGTCCTGTAGTGCAGCGGCGATGT TGCATCGCCAGCGCAGTCTGTAGATCTAATAGCGGAGCGTTGGTAGCAGG GATAGGGTTTTAAAGACGGGCGATGGTCCCGCAATTTTCAAGGGGGCGGC TTTCCTCCTCCCCCCCCCTCTCCCTCCCCGCCCCCCCCCCCCCCCTCGTT TCACTCCACGTTTCAGAGTGGCAGCTGCACTTGGCGAGCGCCATCGGCTT TTTTGTAGGCTGTACATAGGAGAAGCAGACTGCCCCTTTTTGTCACGGCG CGCATGCGCGCAGGCCATCAGCGGCATAGTGCTCGGGCAGGGACTTCACA CGCGTATACCTTACACAACTGATGATCAGGGGACGGCCTTTGCCCCCTGC GCTCACCACTAGAGCGGATGTGATATTCGTCTCGTGGGAGGCGCTAGAGG ACAGCGCGAGCTTGGCCTTCGCAGCTTGCGCGCGCGCACGCGCTCTGGAA TATGACAACACACACAGAAGTGACAATATTAAAGGACCACACCTCT
back to top

Coding sequence (CDS) from alignment at Contig_25:198751..203746+

>mRNA_6611 ID=mRNA_6611|Name=jgi.p|Trimin1|348460|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1512bp|location=Sequence derived from alignment at Contig_25:198751..203746+ (Tribonema minus UTEX_B_3156 )
ATGGGCCTCGAGGGCGAAACCGCAACCTACTTCAAAAACGCCTACGACCA
ACTGGATGACTGCAAAATCCAGGAGGACGACAATGAGCAGGTGCTGAATC
AGATGGTGGTGTGGGCGCTTCTGGCTTTCGCGACGGCGCGCAATGGCACC
ACCCCGCTCAGCAGCAGCACCACTACCGCCACCGCCACCATCACCCTCAC
GCCCATGGTGCGCTACGAGCAGCCCGAGACGCTGCACGAGATAGACACGT
CGTCCGACCCGGCGTACGCGTCCGACAGCATGGCGAGCACGCTGTCGCCC
GGCAGCACTGCCTCATCGGATGACAGCGGCGAGCCCGCGGCGTTCGCGGA
GGCGACCCCCGCCGATAGCGGCCACAAAACCGTCCTCGTCACCGGCGGCG
CGGGCTTCGTCGGTGGCGCCGTCGCGGAGGCGCTGCTCGCACGCGGCGAC
GACGTCCTCATTGTCGACGAGGTCAACGACTACTACGACGTGCGCGTGAA
GCGCGCGAGCCTCGCGGCGCTCGTCGCGCGCTACGGCGCGGCGCGCGTGC
GCATTTTCGAGGGCGACGTCGCGGACGCCGCCTTCATGGGCGCGCTCTTC
GCGGCGCACGCGCCGCAGTGGATCGTGCACATGGCCGCGCGCGCGGGCGT
GCGGCCAAGCATCCAGGACCCCTTCGTCTACGTGCACAGCAACGTGCTCG
GGACGACGCGCCTGCTCGAGCTCGCGGCGCGGCACGGCTGCCGCAGCTTC
GCGTTCGCGTCGTCGAGCAGCGTGTACGGTGAGGGCGCGGCGGAGGTCTT
CAGCGAGGACGACGCCGTAGACGCGCCCGTGTCCCCGTACGCCGCGACCA
AGAAGGCGTGCGAGCTCATGGCGCACACGTACGCGCACCTGTACGGGCTC
AACGTCGCCGCGCTGCGCTTCTTCACAGTCTACGGCCCGCGCGGGCGCCC
CGACATGGCGCCGTACAAGTTCATCGCGGCGGTGTGCGCGGGGCGCGAGA
TACAGCAGTACGGCGACGGCTCCACCTCGCGCGACTACACGTACATTGAG
GACATTGTCGACGGCGTCGTGCGCGCGCTTGACCGCCCACTCGGCTACCA
GGTGTACAACCTCGGGCGCGGCGAGCCGACGCGCCTGTCGCGCTTCATCG
GCATCGTGGAGCGCTGCGTGGGGCGCGCGGCGGTGATCCGCGTGTGCCCC
GAGCAGCCGGGGGATGTCCCGCGCACGTGCGCGGACATCTCCAAGGCGCG
CCGCCTGCTTGGCTACGAGCCGCGCGTGTCGTTCGAGGAGGGCATCGCGC
GCACCGTCGCATGGTACAAGGAGACGTACATGGCGGAGGAGGGGCTGCCG
CAGCAGCCGCAGCAGCAACAGGAGGTGGAGCAGCAGGCGGCGGCGGCGGC
GGCGACGGCGCTCATGACCGCGGCGGCGGCAAAAGCGCAGGCCCTGACGG
CGCTGCCGCCGGCCGCCGTTGTCGTCGTGGAGCCGCACGCCCCCACAGCC
ATGGTCCTGTAG
back to top