mRNA_6679 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163345
Unique NamemRNA_6679
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A836CFB7_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFB7_9STRA)

HSP 1 Score: 377 bits (969), Expect = 1.400e-132
Identity = 185/185 (100.00%), Postives = 185/185 (100.00%), Query Frame = 1 
Query:    1 QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ 555
            QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ
Sbjct:    1 QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ 185
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A836CG86_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG86_9STRA)

HSP 1 Score: 316 bits (809), Expect = 3.470e-108
Identity = 151/185 (81.62%), Postives = 168/185 (90.81%), Query Frame = 1 
Query:    1 QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ 555
            QA +TL NVEDFVRKLCFNQYM+PRAKALYWI QGF  HDTHFPTLSMFTR ELREMYSGNETVSEADFVACL+F+DAN++KW S  M ATRGYLL+A+ DE+FR+QLLRWSTGY+AIP  VNKKF+I+VQPGIRTSDG V+I  DRLPEASTCFNELR+PSY+SLAKLQEAMATAMAVNTF+ Q
Sbjct:    1 QAALTLGNVEDFVRKLCFNQYMRPRAKALYWIRQGFSRHDTHFPTLSMFTRPELREMYSGNETVSEADFVACLNFKDANNFKWGSPEMTATRGYLLQAVHDESFRRQLLRWSTGYSAIPCVVNKKFMIRVQPGIRTSDGAVSILPDRLPEASTCFNELRVPSYTSLAKLQEAMATAMAVNTFDTQ 185
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A835Z2F9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2F9_9STRA)

HSP 1 Score: 317 bits (811), Expect = 7.700e-97
Identity = 154/185 (83.24%), Postives = 166/185 (89.73%), Query Frame = 1 
Query:    1 QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ 555
            + PVTLDNVEDFVRKLC NQYM+PRAKALYWI QGF  HDTHFPTLSMFTR ELREMYSGNETVSEADFVACL+FED  ++K  S  M ATRGYLL+A+QDEAFR+QLLRWSTGYTAIP AVNKKF IKVQPGIRTSDG ++I  DRLPEASTCFNELRLPSY+SLAKLQ+AM TAMAVNTFNVQ
Sbjct: 1410 EEPVTLDNVEDFVRKLCVNQYMQPRAKALYWIKQGFSRHDTHFPTLSMFTRPELREMYSGNETVSEADFVACLTFEDVKNFKCGSPEMTATRGYLLQAVQDEAFRRQLLRWSTGYTAIPSAVNKKFAIKVQPGIRTSDGALSILPDRLPEASTCFNELRLPSYTSLAKLQQAMGTAMAVNTFNVQ 1594
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A835Z2E6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2E6_9STRA)

HSP 1 Score: 310 bits (793), Expect = 2.680e-94
Identity = 148/178 (83.15%), Postives = 161/178 (90.45%), Query Frame = 1 
Query:    1 QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMA 534
            + PVTLDNVEDFVRKLCFNQYM+PRAKALYWI QGF  HDTHFPTLSMFTR ELREM SGNETVSEADFVACLSFED  ++KW S  M ATRGYLL+A+QDEAFR+QLLRWSTGYTAIP+AVNKKF IKVQPGIRTSDG ++I  DRLPEASTCFNELR+PSY+SLAKLQ+AM TAMA
Sbjct: 2973 EEPVTLDNVEDFVRKLCFNQYMRPRAKALYWIKQGFSRHDTHFPTLSMFTRPELREMCSGNETVSEADFVACLSFEDVKNFKWGSPEMIATRGYLLQAVQDEAFRRQLLRWSTGYTAIPFAVNKKFAIKVQPGIRTSDGTMSIRADRLPEASTCFNELRVPSYTSLAKLQQAMGTAMA 3150
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A835ZFC1_9STRA (HECT domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFC1_9STRA)

HSP 1 Score: 265 bits (678), Expect = 3.840e-88
Identity = 127/184 (69.02%), Postives = 149/184 (80.98%), Query Frame = 1 
Query:    4 APVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ 555
            APVTL+NV+ FVR+LC NQY+KPRAKAL WI QGF  H  H PTL+ FTR+ELR+MYSGNETVSEADF+ CLSFEDA +++W S  M ATRGYLL+A++DEAFRK+LL WSTGY AIP+A  +KF IKV+PGI  +D  V+I  D LPEASTC NELRLP YSSLAKL+E M  AMAV +FN Q
Sbjct:    8 APVTLENVQGFVRRLCCNQYIKPRAKALDWIKQGFSRHSMHLPTLNSFTRQELRDMYSGNETVSEADFIECLSFEDAENFQWGSEEMTATRGYLLQAVKDEAFRKRLLHWSTGYNAIPFAATRKFAIKVKPGISLNDNTVSILPDGLPEASTCINELRLPCYSSLAKLRERMDMAMAVLSFNEQ 191
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A836CI21_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI21_9STRA)

HSP 1 Score: 160 bits (404), Expect = 5.430e-43
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1 
Query:    1 QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFE 228
            Q PVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFE
Sbjct:  484 QEPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFE 559
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A835ZID8_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 6.720e-36
Identity = 63/89 (70.79%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:  289 EAIQDEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ 555
            +A++DEAFR++LL WSTGY AIP+A N+KF IKV+PGI T  G V+I  DRLPEASTCFNELRLPSYSSLAKLQE M  AMAV++F+ Q
Sbjct:   14 QAVKDEAFRRRLLHWSTGYNAIPFAANRKFAIKVKPGISTVCGTVSILADRLPEASTCFNELRLPSYSSLAKLQEVMDMAMAVHSFDEQ 102
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A836CGI2_9STRA (HECT domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGI2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.620e-17
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:  388 VQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAMA-VNTFNVQ 555
            VQ GIRTSDG V+I  DRLPEASTCFNELR+PSY+SLA LQEAM+TAMA + TFNVQ
Sbjct:    9 VQLGIRTSDGAVSILPDRLPEASTCFNELRVPSYTSLAALQEAMSTAMAAIFTFNVQ 65
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A7S3C309_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C309_9EUKA)

HSP 1 Score: 59.7 bits (143), Expect = 8.350e-8
Identity = 60/186 (32.26%), Postives = 82/186 (44.09%), Query Frame = 1 
Query:    7 PVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGF---GSHDTHFPTLSMFTREELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQDE----AFRKQLL-RWSTGYTAIPYA-VNKK--FIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAM 531
            P+   NV   V   C  + +  R  AL  + +GF   G  D     L+  +  +L  +  G  T+S  D + C        + WS     A   YL E +QD     A R+QLL RW TG   +P + + +K  F     P    SDGR       LPEASTCF+E+RLPS  S   L+     A+
Sbjct:    3 PLAATNVARAVVAGCRRKLLVDRHAALVALREGFTLEGRLDLGVQ-LAQHSNTDLSLLLQGKPTLSAQDLLEC--------FDWSEPCCAAVT-YLRELLQDAGAFGATRRQLLLRWCTGRNVLPVSGLGRKVTFATADVPQNELSDGR-------LPEASTCFHEVRLPSNLSKDMLRARFDQAL 171
[Close]
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Match: A0A072PWW2_9EURO (HECT-type E3 ubiquitin transferase n=1 Tax=Exophiala aquamarina CBS 119918 TaxID=1182545 RepID=A0A072PWW2_9EURO)

HSP 1 Score: 54.7 bits (130), Expect = 2.230e-5
Identity = 50/181 (27.62%), Postives = 85/181 (46.96%), Query Frame = 1 
Query:    1 QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFTREELREMYSGNETVSEADFVACL--SFEDANSYKWSSRAMRATRGYLLEAIQD--EAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPEASTCFNELRLPSYSSLAKLQEAMATAM 531
            + PVT+DNV+D+V K+          + +     GF S    +PTL  FT +EL  ++     V+E   +  L  S +  + +   S++++     LL+ + +   A R+  L++ TG   +P    K          + S+   +   D LP   TC N L+LP YS+ AKL+E +  A+
Sbjct: 1716 EIPVTMDNVQDYVDKVLDLSLGSGVRRQVEAFQTGF-SQVFAYPTLKAFTPDELVMLFG---RVNEDWSIETLMDSVKADHGFNMDSKSVKN----LLQTMSELTPAQRRDFLQFVTGSPKLPIGGFKSLTPMFTVVCKPSEPPYS-SDDYLPSVMTCVNYLKLPDYSTQAKLKERLFVAI 1887
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163345 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A836CFB7_9STRA1.400e-132100.00HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CG86_9STRA3.470e-10881.62HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835Z2F9_9STRA7.700e-9783.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z2E6_9STRA2.680e-9483.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZFC1_9STRA3.840e-8869.02HECT domain-containing protein (Fragment) n=1 Tax=... [more]
A0A836CI21_9STRA5.430e-4398.68HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A835ZID8_9STRA6.720e-3670.79HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A836CGI2_9STRA1.620e-1778.95HECT domain-containing protein n=1 Tax=Tribonema m... [more]
A0A7S3C309_9EUKA8.350e-832.26Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A072PWW2_9EURO2.230e-527.62HECT-type E3 ubiquitin transferase n=1 Tax=Exophia... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_25contigContig_25:727043..729001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163345|e_gw1.25.195.1
BRITEko00000,ko00001,ko01000,ko04121
KEGG Pathwayko04120,map04120
KEGG koko:K10592
EC2.3.2.26
GOsGO:0000278,GO:0000447,GO:0000448,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003824,GO:0004842,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006464,GO:0006725,GO:0006807,GO:0006810,GO:0006913,GO:0006996,GO:0006997,GO:0007049,GO:0008150,GO:0008152,GO:0008361,GO:0009987,GO:0010467,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0016072,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022613,GO:0030490,GO:0031224,GO:0031974,GO:0031981,GO:0032446,GO:0032535,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0036211,GO:0042254,GO:0042273,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046907,GO:0051169,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061630,GO:0061659,GO:0065007,GO:0065008,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0090066,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140096,GO:1901360,GO:1901564
Preferred nameTOM1
DescriptionUbiquitin-protein ligase
COG categoryO
Max annot lvl4751|Fungi
EggNOG OGsCOG5021@1|root,KOG0939@2759|Eukaryota,38EBM@33154|Opisthokonta,3NWC2@4751|Fungi,3QNAQ@4890|Ascomycota,20BVU@147545|Eurotiomycetes,3S3PM@5042|Eurotiales
Evalue3.5e-09
Seed ortholog746128.CADAFUBP00006605
Hectar predicted targeting categoryother localisation
TranscriptId163667
TrackFilteredModels1
ProteinId163345
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163345gene_6679Tribonema minus UTEX_B_3156 geneContig_25 727043..729001 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6679_1exon_6679_1Tribonema minus UTEX_B_3156 exonContig_25 727043..727333 +
exon_6679_2exon_6679_2Tribonema minus UTEX_B_3156 exonContig_25 728164..728259 +
exon_6679_3exon_6679_3Tribonema minus UTEX_B_3156 exonContig_25 728831..729001 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6679CDS_6679Tribonema minus UTEX_B_3156 CDSContig_25 727043..727333 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163345Trimin1|163345|e_gw1.25.195.1Tribonema minus UTEX_B_3156 polypeptideContig_25 727043..729001 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6679 ID=mRNA_6679|Name=jgi.p|Trimin1|163345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_25:727043..729001+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGGCACCAGTGACGCTGGACAATGTAGAGGACTTTGTGCGCAAGCTGTG
CTTCAACCAGTACATGAAGCCGCGCGCCAAGGCCCTGTACTGGATCACCC
AGGGCTTTGGCAGCCACGACACGCACTTCCCGACGCTGTCCATGTTCACA
CGCGAGGAGCTGCGGGAGATGTACAGCGGCAACGAGACCGTCAGCGAGGC
CGACTTTGTCGCATGCCTCAGCTTTGAGGACGCCAATAGTTACAAGTGGA
GCAGCAGGGCGATGAGGGCCACACGAGGCTACCTGCTCGAGGCCATTCAG
GACGAAGCGTTCAGGAAGCAGCTGCTGCGCTGGAGCACCGGCTACACTGC
CATCCCCTATGCCGTCAACAAAAAATTCATCATCAAGGTGCAGCCAGGCA
TTCGCACCAGCGACGGCAGAGTGACCATCCACCAGGACAGGCTGCCGGAG
GCGTCTACGTGCTTCAACGAGCTGCGCCTGCCCAGTTACTCGAGCCTGGC
CAAGCTCCAAGAGGCCATGGCCACCGCCATGGCGGTGAATACATTCAACG
TGCAGTGA
back to top

protein sequence of jgi.p|Trimin1|163345

>Trimin1|163345|e_gw1.25.195.1 ID=Trimin1|163345|e_gw1.25.195.1|Name=jgi.p|Trimin1|163345|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
QAPVTLDNVEDFVRKLCFNQYMKPRAKALYWITQGFGSHDTHFPTLSMFT
REELREMYSGNETVSEADFVACLSFEDANSYKWSSRAMRATRGYLLEAIQ
DEAFRKQLLRWSTGYTAIPYAVNKKFIIKVQPGIRTSDGRVTIHQDRLPE
ASTCFNELRLPSYSSLAKLQEAMATAMAVNTFNVQ*
back to top

mRNA from alignment at Contig_25:727043..729001+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6679 ID=mRNA_6679|Name=jgi.p|Trimin1|163345|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1959bp|location=Sequence derived from alignment at Contig_25:727043..729001+ (Tribonema minus UTEX_B_3156 )
CAGGCACCAGTGACGCTGGACAATGTAGAGGACTTTGTGCGCAAGCTGTG
CTTCAACCAGTACATGAAGCCGCGCGCCAAGGCCCTGTACTGGATCACCC
AGGGCTTTGGCAGCCACGACACGCACTTCCCGACGCTGTCCATGTTCACA
CGCGAGGAGCTGCGGGAGATGTACAGCGGCAACGAGACCGTCAGCGAGGC
CGACTTTGTCGCATGCCTCAGCTTTGAGGACGCCAATAGTTACAAGTGGA
GCAGCAGGGCGATGAGGGCCACACGAGGCTACCTGCTCGAGGTCCGCTGA
GCTCAGTGATGACAGCACTCGATTGGATGCTGCATACTAGGTCCATTGAG
GTTACTGATGGTGCTGTTTTAGCCAATGATCGACTGATGCGTACCATCCA
AACGCGTTGCTCAAACACCAGTCGCGTGCACTTGCATTGTGACTTGTAGT
GGGCAACATGATGGCTTTTACACTCTAGGGGCGCAGGATGCTGGGGTAAG
TAGAGCAGCAAATGACAGTAGGTTATTGCATGCAAACACCAGCTAGGTGG
CTTCAAGCCTTGCATTTGAGCTTCTGTATATGTATTCTCCTATCCAAGAT
TTGCTGCATCCATTGCCACATGATCTCTGCCATTGGGGCATCTAATGAGT
CACAAGCTGGCACTGACTCGCTGGCACACAGCGCTCTCAAACGCAAGTTG
ATGAGTGCACTCTCAGTTTTTTGCTCGTTCGAGCACAACCTTTGAAATAG
ATTCGGCAGCCAGTATACGTCCTTCTCAACAGCAGCTACACCATAGAGGC
AGGTATGCATCACTGAGTTTTGCTGTGCGGACTGAGGTGTCATTGACGCA
CAATGCAGGTTGCGAAGGCATAAGGACGGCACTGCTTGAACCATTCAGGT
GTGCTAGCAGCGCATCACCTGCTTCAGATGCACGTGTCCAGTCACGGTGC
TGTTTTTTCAGGTGGAATGTACACAATCAAACTGAGAGCATACTCATAGA
CTCAAGTTCTTGACGTGAGCAAAGAATGCTGTGTGTCATGGCTGCCTTCA
ACAAAGCAATATAAACAACTGCTAGCTCGCTGACACTCTGTTGTTCATTC
GGTTGCATGTGAGACATGCAGGCCATTCAGGACGAAGCGTTCAGGAAGCA
GCTGCTGCGCTGGAGCACCGGCTACACTGCCATCCCCTATGCCGTCAACA
AAAAATTCATCATCAAGGTCAGCTGCATCCCGGCGCGCACTGACTTTTGT
GTACAACTTACTACAGTCATTAGTTAACAATCGGCAAGTCAAAAGTGCAA
TACCGCGCTGACCCCATGCTCCTGCTCCAATTCTTGCGCTGAGCAGCTTT
GCACATGGCTTCTCTTTGAGAGTGGCCGTTGACAATTCGATAGCCAATTG
ATGTTTGAAAGCATGACAAGAATATCACAGCTTCACAAACGTCTCTTTGG
AATATTAACATGTCCCACTAACGGCCACAATTGGGTACGCGCTTGCTTCT
CTAAGAACAGCAGCTTCCAAAACAAAGAAAAACGGAGTCTTGATGGCATG
ATGCGCTGCACTCCTCGTCACACACATGCGCGTTGCAAGTGAGACTTGGC
ACGCGCCAACTGTATCTGTACAAACAGACTCCTGAACATAGTGCCGTGGT
CAGTGCCTAGATGCAGTGCAGCATGACGGATACTTGAAAGCATCAAGGTG
CCCCGAGGGGCGCAGCGTCGCTGCGATCTGGCCTGCTGCAACATTGTGCG
GCTTTTGACGCACCGCCGTTGCCGCCTGCCAATTACAGGTGCAGCCAGGC
ATTCGCACCAGCGACGGCAGAGTGACCATCCACCAGGACAGGCTGCCGGA
GGCGTCTACGTGCTTCAACGAGCTGCGCCTGCCCAGTTACTCGAGCCTGG
CCAAGCTCCAAGAGGCCATGGCCACCGCCATGGCGGTGAATACATTCAAC
GTGCAGTGA
back to top

Coding sequence (CDS) from alignment at Contig_25:727043..729001+

>mRNA_6679 ID=mRNA_6679|Name=jgi.p|Trimin1|163345|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_25:727043..729001+ (Tribonema minus UTEX_B_3156 )
CAGGCACCAGTGACGCTGGACAATGTAGAGGACTTTGTGCGCAAGCTGTG
CTTCAACCAGTACATGAAGCCGCGCGCCAAGGCCCTGTACTGGATCACCC
AGGGCTTTGGCAGCCACGACACGCACTTCCCGACGCTGTCCATGTTCACA
CGCGAGGAGCTGCGGGAGATGTACAGCGGCAACGAGACCGTCAGCGAGGC
CGACTTTGTCGCATGCCTCAGCTTTGAGGACGCCAATAGTTACAAGTGGA
GCAGCAGGGCGATGAGGGCCACACGAGGCTACCTGCTCGAGGCCATTCAG
GACGAAGCGTTCAGGAAGCAGCTGCTGCGCTGGAGCACCGGCTACACTGC
CATCCCCTATGCCGTCAACAAAAAATTCATCATCAAGGTGCAGCCAGGCA
TTCGCACCAGCGACGGCAGAGTGACCATCCACCAGGACAGGCTGCCGGAG
GCGTCTACGTGCTTCAACGAGCTGCGCCTGCCCAGTTACTCGAGCCTGGC
CAAGCTCCAAGAGGCCATGGCCACCGCCATGGCGGTGAATACATTCAACG
TGCAGTGA
back to top