mRNA_6693 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: A0A836CGI6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGI6_9STRA) HSP 1 Score: 311 bits (798), Expect = 2.230e-107 Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFYFESGNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRIRVLAR 477 VPQVIDDAPWVVTDEFYFESGNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRIRVLAR Sbjct: 1 VPQVIDDAPWVVTDEFYFESGNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRIRVLAR 159
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: A0A835Z3L7_9STRA (Choline-phosphate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L7_9STRA) HSP 1 Score: 236 bits (602), Expect = 1.610e-74 Identity = 131/170 (77.06%), Postives = 143/170 (84.12%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFY------------FESGNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRIRVLA 474 V +V++DAPWVVTDEF G+ASGV+DDGDVYAHL RAGRFVET RTEGISTSD I SI+Q +Y+ FVRRNLRRGYSAKDMNVSFL++QAIKFGMVKERVAEN IGKLIKENSQAQALAED+QKAFVSVF+RDSAFRTRWRNQRKEIRNRI VLA Sbjct: 207 VDEVVEDAPWVVTDEFLCAHSIDFVCHDALPYGDASGVSDDGDVYAHLKRAGRFVETRRTEGISTSDIITSIIQ---DYDEFVRRNLRRGYSAKDMNVSFLKEQAIKFGMVKERVAEN-IGKLIKENSQAQALAEDLQKAFVSVFNRDSAFRTRWRNQRKEIRNRIGVLA 372
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: A0A835Z8U6_9STRA (Choline-phosphate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8U6_9STRA) HSP 1 Score: 179 bits (453), Expect = 1.360e-54 Identity = 106/172 (61.63%), Postives = 120/172 (69.77%), Query Frame = 1 Query: 7 QVIDDAPWVVTDEFYFESG------------NASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPS--------------------HNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTR 426 QV+ DAPWVVTDEF +ASGV+D+GDVYAHL RAGRFVET RTEGISTSD I SI+Q +Y+ FVRRNLRRGYS DMNVS L++QAIKFGMVKERVAE+ IGKLIK+N QAQALAE++QKAFV VF+RDSAFRTR Sbjct: 6 QVVKDAPWVVTDEFLRAHSIDFVCHDALPYIDASGVSDNGDVYAHLKRAGRFVETRRTEGISTSDIITSILQLGWQEAGAVRSGRLKALHCRLLQDYDKFVRRNLRRGYSINDMNVSCLKEQAIKFGMVKERVAES-IGKLIKKNPQAQALAENLQKAFVCVFNRDSAFRTR 176
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: A0A835Z6X4_9STRA (Choline-phosphate cytidylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X4_9STRA) HSP 1 Score: 166 bits (421), Expect = 1.250e-49 Identity = 98/180 (54.44%), Postives = 117/180 (65.00%), Query Frame = 1 Query: 7 QVIDDAPWVVTDEFY------------FESGNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQ------------PSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRIRVLA 474 QV +DAPW VTDEF +AS V+D+G +Y HLNRAGRF+E RTEGISTS + + ++ P +Y+ FVRRN+ RGYSAKDMNVSFL++QAIKFG EN QAQALAED+QKAFV++FDR+SAFRTRWRNQRK IRNRI VLA Sbjct: 15 QVREDAPWAVTDEFLRAYSIDFVCHDALPYDHASSVSDNGGMYEHLNRAGRFIEMRRTEGISTSATSSPVLMNRLRRHSDAAGAPPTDYDEFVRRNVFRGYSAKDMNVSFLKEQAIKFGW---------------ENLQAQALAEDLQKAFVTLFDRESAFRTRWRNQRKAIRNRIGVLA 179
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: D8LPY9_ECTSI (Choline-phosphate cytidylyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPY9_ECTSI) HSP 1 Score: 147 bits (371), Expect = 4.830e-40 Identity = 91/215 (42.33%), Postives = 120/215 (55.81%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFY------------FESGNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQ--------------------------------------------AQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRIRVLAR 477 V +V++DAPWVV ++F G+ASG + GDVYAHL R GRFVET RTEGISTSD I SI+Q +Y+ FVRRN+ RGY+A+DMNV FL++QAIKF +VK++V +GK+IK+ + AQ D+Q+ FV +FDRD A RT +R QR++IR R+ VLAR Sbjct: 151 VDEVVEDAPWVVDEDFIAVHQIDFVCHDALPYGDASGQSSSGDVYAHLKRQGRFVETQRTEGISTSDIITSIIQ---DYDVFVRRNMERGYNARDMNVPFLKEQAIKFDIVKDKVTRR-VGKVIKDRQKKKTKQQAGGALITKGVKGRGXXXXGVDPNGNKERHNLVLDLGNHAQETITDMQRNFVQIFDRDGAIRTSFREQRRQIRERVNVLAR 361
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: H3GGV7_PHYRM (Choline-phosphate cytidylyltransferase n=20 Tax=Peronosporaceae TaxID=4777 RepID=H3GGV7_PHYRM) HSP 1 Score: 122 bits (305), Expect = 8.520e-31 Identity = 69/166 (41.57%), Postives = 105/166 (63.25%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFYFES------------GNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRI 462 V +V++DAPWV++DEF E +ASG +GDVYA + G+F+ET RT+GISTSD I I+ Y+ F+RRNL+RGYS KDMNV F+++++IKF M ++V + G + K S+A +D+Q +F+ +F ++ RT +R +RK I+ R+ Sbjct: 136 VDEVVEDAPWVLSDEFLEEHQIDYVCHDALPYSDASGEASEGDVYARIKAMGKFLETRRTDGISTSDLIIRIIAE---YDTFIRRNLQRGYSGKDMNVPFIKEKSIKFDMAVDKVRNDVDGFVHKWISKA----DDMQHSFLELFSKEGRLRTSFRKRRKIIKERL 294
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: A0A5D6Y8Z6_9STRA (Choline-phosphate cytidylyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8Z6_9STRA) HSP 1 Score: 122 bits (305), Expect = 1.290e-30 Identity = 68/166 (40.96%), Postives = 101/166 (60.84%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFYFESG------------NASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRI 462 V +V++DAPWV+TD+F + +ASG +GDVYA + G+F+ET RT+GISTSD I I+ Y+ F+RRNL RGY+ KDMNV F+++Q+IKF M ++V + G + AED+Q F+ +F R+ R+ +R QR++IR R+ Sbjct: 144 VDEVVEDAPWVITDDFLEQHAIDYVCHDALPYSDASGEAAEGDVYARIKAMGKFLETKRTDGISTSDLIIRIVAE---YDTFIRRNLARGYTGKDMNVPFMKEQSIKFDMAVDKVKHDVDGFF----HRLVGKAEDIQTGFLDLFRREGTLRSSFREQRQQIRRRL 302
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: K3WSJ0_GLOUD (Choline-phosphate cytidylyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSJ0_GLOUD) HSP 1 Score: 121 bits (304), Expect = 1.990e-30 Identity = 69/166 (41.57%), Postives = 102/166 (61.45%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFYFESG------------NASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRI 462 V +V++DAPWV+TDEF + +ASG +GDVYA + G+F+ET RT+GISTSD I I+ Y+ F+RRNL RGY+ K+MNV F+++Q+IKF M ++V + G + K +A ED+Q F+ +F +D RT +R +RK I+ R+ Sbjct: 162 VDEVVEDAPWVITDEFIEKHNIDYVCHDALPYSDASGEASEGDVYARIKAMGKFLETKRTDGISTSDLIIRIVAE---YDTFIRRNLARGYTGKEMNVPFMKEQSIKFDMAVDKVKHDVDGFVHKWVGKA----EDMQHGFLDLFSKDGRLRTSFRKRRKIIKERL 320
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: A0A8K1FT60_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FT60_PYTOL) HSP 1 Score: 122 bits (306), Expect = 2.520e-30 Identity = 68/166 (40.96%), Postives = 106/166 (63.86%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFYFES------------GNASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRI 462 V +V++DAPWV+TDEF + ++SG + DGDVYA + G+F+ET RT+GISTSD I I+ Y+ F+RRNL+RGY+ KDMNV F+++Q+IKF M ++V ++ + L+ + AED+Q +F+ +F ++ RT +R +RK I+ R+ Sbjct: 215 VDEVVEDAPWVLTDEFIEKHQIDYVCHDALPYSDSSGESSDGDVYARIKMMGKFLETKRTDGISTSDLIIRIIAE---YDTFIRRNLQRGYTGKDMNVPFMKEQSIKFDMAVDKV-KHDVDSLVHK---VLGKAEDMQHSFLDLFSKEGRLRTSFRKRRKIIKERL 373
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Match: F0WYF1_9STRA (Choline-phosphate cytidylyltransferase n=2 Tax=Albugo TaxID=65356 RepID=F0WYF1_9STRA) HSP 1 Score: 120 bits (302), Expect = 3.370e-30 Identity = 69/171 (40.35%), Postives = 107/171 (62.57%), Query Frame = 1 Query: 1 VPQVIDDAPWVVTDEFYFESG------------NASGVNDDGDVYAHLNRAGRFVETCRTEGISTSDSIASIMQPSHNYNAFVRRNLRRGYSAKDMNVSFLEQQAIKFGMVKERVAENTIGKLIKENSQAQALAEDVQKAFVSVFDRDSAFRTRWRNQRKEIRNRIRVLAR 477 V +VI+DAPWV+TDEF + + SG + DGDVY + + G+F+ET RT+GISTSD I I++ Y+ F+RRNL+RGY+ K+MNVS+L++Q+IKF M ++V + G + K +A +++Q F+ +F RD RT R +R+ ++ R+ +AR Sbjct: 158 VDEVIEDAPWVITDEFLDKHAIDYVCHDSLPYSDTSGESSDGDVYDRIKKMGKFLETKRTDGISTSDLINRIIKE---YDTFIRRNLQRGYTGKEMNVSYLKEQSIKFDMAVDKVKHDVDGFIHKWVGKA----DELQYNFLDLFSRDGPLRTSLRKRRRILKERLTDIAR 321 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|144012 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6693 ID=mRNA_6693|Name=jgi.p|Trimin1|144012|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=477bp|location=Sequence derived from alignment at Contig_25:862970..864562+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GTGCCGCAGGTCATTGACGATGCGCCGTGGGTCGTGACAGACGAGTTCTAback to top protein sequence of jgi.p|Trimin1|144012 >Trimin1|144012|gw1.25.89.1 ID=Trimin1|144012|gw1.25.89.1|Name=jgi.p|Trimin1|144012|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=159bp VPQVIDDAPWVVTDEFYFESGNASGVNDDGDVYAHLNRAGRFVETCRTEGback to top mRNA from alignment at Contig_25:862970..864562+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6693 ID=mRNA_6693|Name=jgi.p|Trimin1|144012|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1593bp|location=Sequence derived from alignment at Contig_25:862970..864562+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_25:862970..864562+ >mRNA_6693 ID=mRNA_6693|Name=jgi.p|Trimin1|144012|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=477bp|location=Sequence derived from alignment at Contig_25:862970..864562+ (Tribonema minus UTEX_B_3156 )back to top |