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Homology
BLAST of jgi.p|Trimin1|354448 vs. uniprot
Match: A0A835Z0Y3_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Y3_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.530e-36 Identity = 343/435 (78.85%), Postives = 343/435 (78.85%), Query Frame = 2
Query: 122 MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTXXXXXXXXXXXXXXXXXXXXXXXXITALRARVLLFLLPIALSFPLLLLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAPVLLPQEIYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPTATLARAELVAAPLACGEQV------------------------------QPPAPLEHVEQAKPSALPAHSEPVXXXXXXXXXXPAAPVWR---------------------------------------------GEQVQLPTLLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPALQAHQQRQKAQEKHPVP 1201
MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTXXXXXXXXXXXXXXXXXXXXXXXXITALRARVLLFLLPIALSFPLLL XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAPVLLPQEIYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPTATLARAELVAA QPPAPLEHVEQAKPSALPAHSE XXXXXXXXX PAAPVWR QLPTLLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPALQAHQQRQKAQEKHPVP
Sbjct: 1 MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTXXXXXXXXXXXXXXXXXXXXXXXXITALRARVLLFLLPIALSFPLLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVAAPVLLPQEIYLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKPTATLARAELVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQPPAPLEHVEQAKPSALPAHSEXXXXXXXXXXXQPAAPVWRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLPTLLPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAPALQAHQQRQKAQEKHPVP 435
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | Trimin1|354448|estExt_Genemark1.C_Ctg_2490004 |
| Hectar predicted targeting category | signal anchor |
| TranscriptId | 354770 |
| Track | FilteredModels1 |
| ProteinId | 354448 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17956 ID=mRNA_17956|Name=jgi.p|Trimin1|354448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1204bp|location=Sequence derived from alignment at Contig_249:10592..13050- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
TCGCAGTCCCGACTTGATGCTCCGCCCCTTGAGCGCAGGCCCCGCCAAAG
CCGCACATGTTTGCGACTGATTGGCATCCATCAGGAATGGCACATCGTCG
TCTTTGGGATCGTAGTTGTTGATGCTGGAGAACTGGGCGCCGTCTGAAGT
GAGGATCACAAGCTCCCCGCGCACCACCCCCTGCCTCAACCTCCTCATCG
TCATCGTCGCCGCCCTCACCATCCTCATCGTGATCGCCGCCGCCCTCACT
GTGCTCATCGACATCGCCGCCGCCCTCACCGTCCTCATCGTCATCACTGC
TCTCCGCGCCCGAGTGCTCCTCTTCCTGCTCCCCATTGCCCTCAGCTTCC
CGCTCCTGCTCCTTCCGCCGCAGGCGCACCGCGCTCCGCTGCTGCAGCGG
CAGCGGAGCGTGGTGCGCGGGGAGCAGGTGAAGCCGACGGCGACGTTGGC
GCGCGGGGAGCAGCAGGTGAAGCCCACGGCGGCGCTGGCGCGCCGGGAGC
AGGTAAAGCCGACGGCAGCGCTGGCGCGCGCGGAGCCAGTGGCTGCGCCG
GTGCTGCTGCCGCAGGAGATATATTTGAAGCCGACGACGCCGTCCGCGGG
CGGGGAGCAGGTGAAGCCGCCGGCGCTGTCGGTGTGCGTGGAGCAGGTGC
AGCCGTCGGCGCCGCTCGCGTGCGGGGAGCAGGTGAAGCCGATGGCGGCG
CAGGTGAAGCCGACGACGGTGCAGCCGCCAGCGCCGCTCGCGTGCACGGA
GCAGGTGAACCAGACGGCGGCACAGGTGAACAAGCCGACGGCGACGCTGG
CGCGCGCAGAGCTGGTGGCTGCGCCGCTCGCGTGCGGGGAGCAGGTGCAG
CCGCCGGCGCCACTCGAGCATGTGGAGCAGGCGAAGCCGTCAGCGTTGCC
GGCGCACTCAGAGCCGGTGCAGTCACCGGCGCACGCGGAGCCGGTGCAGC
CGGCGGCGCCGGTCTGGCGCGGGGAGCAGGTGCAGCTGCCAACGCTGCTG
CCACAGGGGGACCAGGTGCAGCCACCAGCGCCGCTGCCGCGGGGAGAGCC
GGTGAAGCCGATGGCGCTGCTGCCTCGGGAGGAACCGGTGAAGCCGACGG
CACCGCTGCCGTGGGGGGGGGCAGAGAAGCCGAATGCGCGTGCACCGGCT
CTGCAGGCCCACCAGCAGCGGCAGAAGGCGCAGGAGAAGCATCCGGTGCC
ATAG back to topprotein sequence of jgi.p|Trimin1|354448 >Trimin1|354448|estExt_Genemark1.C_Ctg_2490004 ID=Trimin1|354448|estExt_Genemark1.C_Ctg_2490004|Name=jgi.p|Trimin1|354448|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=361bp
MLENWAPSEVRITSSPRTTPCLNLLIVIVAALTILIVIAAALTVLIDIAA
ALTVLIVITALRARVLLFLLPIALSFPLLLLPPQAHRAPLLQRQRSVVRG
EQVKPTATLARGEQQVKPTAALARREQVKPTAALARAEPVAAPVLLPQEI
YLKPTTPSAGGEQVKPPALSVCVEQVQPSAPLACGEQVKPMAAQVKPTTV
QPPAPLACTEQVNQTAAQVNKPTATLARAELVAAPLACGEQVQPPAPLEH
VEQAKPSALPAHSEPVQSPAHAEPVQPAAPVWRGEQVQLPTLLPQGDQVQ
PPAPLPRGEPVKPMALLPREEPVKPTAPLPWGGAEKPNARAPALQAHQQR
QKAQEKHPVP* back to topmRNA from alignment at Contig_249:10592..13050- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_17956 ID=mRNA_17956|Name=jgi.p|Trimin1|354448|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2459bp|location=Sequence derived from alignment at Contig_249:10592..13050- (Tribonema minus UTEX_B_3156 )
TCGCAGTCCCGACTTGATGCTCCGCCCCTTGAGCGCAGGCCCCGCCAAAG
CCGCACATGTTTGCGACTGATTGGCATCCATCAGGAATGGCACATCGTCG
TCTTTGGGATCGTAGTTGTTGATGCTGGAGAACTGGGCGCCGTCTGAAGT
GAGGATCACAAGCTCCCCGCGGTGGGCAGATGGTCCTGGTACTGTGACCA
GCACAGCGAAACACTCACTACCGTGGTAGAAGAGCATCGACGGGTGCAGC
AGCGGCAGCTGCCCGTTCGCTTCTGCCTCACTGAGAAGCCACATGGTCAC
CAGCCCCGGGGCGCATGCTGCGGCCGCCTCCACCACAGCACCACCCCCTG
CCTCAACCTCCTCATCGTCATCGTCGCCGCCCTCACCATCCTCATCGTGA
TCGCCGCCGCCCTCACTGTGCTCATCGACATCGCCGCCGCCCTCACCGTC
CTCATCGTCATCACTGCTCTCCGCGCCCGAGTGCTCCTCTTCCTGCTCCC
CATTGCCCTCAGCTTCCCGCTCCTGCTCCTTGTCACGCGCCCCATCTTCC
CACTCCTGCTCCTCATTACGCGCCCCACCTTCCCCCTCCAGATCCATTAC
ATCATGCTCTGCCGCCGCCGGCACCTCGGCAGCCGCCGCAGGCGCACCGC
GCTCCGCTGCTGCAGCGGCAGCGGAGCGTGGTGCGCGGGGAGCAGGTGAA
GCCGACGGCGACGTTGGCGCGCGGGGAGCAGGTGAAGCGGACGGCGGCGC
TGGCGCGGGGGACTTAGGTGAAGCGGACAGCGCCGCCCGCGCGCGGGGAG
CAGGTGAAGCCCACGGCGGCGCTGGCGCGCCGGGAGCAGGTAAAGCCGAC
GGCAGCGCTGGCGCGCGCGGAGCCAGTGGCTGCGCCGGTGCTGCTGCCGC
AGGAGATATATTTGAAGCCGACGACGCCGTCCGCGGGCGGGGAGCAGGTG
AAGCCGCCGGCGCTGTCGGTGTGCGTGGAGCAGGTGCAGCCGTCGGCGCC
GCTCGCGTGCGGGGAGCAGGTGAAGCCGATGGCGGCGCAGGTGAAGCCGA
CGACGGTGCAGCCGCCAGCGCCGCTCGCGTGCACGGAGCAGGTGAACCAG
ACGGCGGCACAGGTGAACAAGCCGACGGCGACGCTGGCGCGCGCAGAGCT
GGTGGCTGCGCCGCTCGCGTGCGGGGAGCAGGTGCAGCCGCCGGCGCCAC
TCGAGCATGTGGAGCAGGCGAAGCCGTCAGCGTTGCCGGCGCACTCAGAG
CCGGTGCAGTCACCGGCGCACGCGGAGCCGGTGCAGCCGGCGGCGCCGGT
CTGGCGCGGGGAGCAGGTGCAGCTGCCAACGCTGCTGCCACAGGGGGACC
AGGTGCAGCCACCAGCGCCGCTGCCGCGGGGAGAGCCGGTGAAGCCGATG
GCGCTGCTGCCTCGGGAGGAACCGGTGAAGCCGACGGCACCGCTGCCGTG
GGGGGGGGCAGAGAAGCCGAATGCGCGTGCACCGGTGTGTTCATGGTGGC
ACGCGTTGCCACTTCAAGCGCAGCCAGCGACGCGACCTCTTCTTCCTCCT
CTTCTGAGCTGCTGTCTGGGCCACGGTCGTCTTCTTCCTCCTCTTCTGAG
CTGCTATCTGGGCCACGCTGCGTATCTGAAGTCTTTACTGACAAGCCAGC
ATCTGGCCCTCCTGCCATGGCAGCAGATGATATGGAAGGGGGGGCGCAAA
GTGATATGAGAACATGCACTAATGACTATGTGCACCGCTAGGCAAGACGC
TTTGAAAGTGTCATTGAACATGCGGCAAATAAACTCTGAGTGCCGCCTGT
TTTACACAATAATTGAACACATGGTATCTGAACAAGTGCATAGCTAAGCA
ACAGAAACCTTTTACGGCAAATACTGTCTCTTATGCGTGCTTTGCAAAAT
TGCATCACAGTGAATGCACGGCTAAGGAACAGTACTTTTTTAGTTATGAG
TGCAGCTGCCTACTCTCACACAGCGACAGTTTGCATACATCACATACAGC
CTGCAATGCAACCACCCATGATATAAAAGGAAGGTGTGAGCATGTCTGTG
TTTACCGAACCATCCACATGTGGCTCCGAAACAAGCCCAGTAGCAGCAGT
GGTGTGCGTGGCCGCAGCAGCAGTTGAAGAGGAATCAGCTGACGCAGTAG
CAGCAGCATACGGGATCATGGGCACTGATGAGCTTACTGAGGGATGTGCT
GCATTTTGGCACTGATGCTGCCGCCTGTTCTGCAGGCTCACCAGCAGCGC
TGTACGATGTAATGCAGCAGATTATGCGTCCGGAGCAGGCCTATCAGCAG
CGCTGGCAGGAATTGCAGCTGCAAGCAGCACAAGCATTCCGAGCAAATGA
ACGCAGTACAGGATAATTCTTTGTGGGGTATCCTCACCTGATGCTGCTTC
AGGCTCTGCAGGCCCACCAGCAGCGGCAGAAGGCGCAGGAGAAGCATCCG
GTGCCATAG back to topCoding sequence (CDS) from alignment at Contig_249:10592..13050- >mRNA_17956 ID=mRNA_17956|Name=jgi.p|Trimin1|354448|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1083bp|location=Sequence derived from alignment at Contig_249:10592..13050- (Tribonema minus UTEX_B_3156 )
ATGCTGGAGAACTGGGCGCCGTCTGAAGTGAGGATCACAAGCTCCCCGCG
CACCACCCCCTGCCTCAACCTCCTCATCGTCATCGTCGCCGCCCTCACCA
TCCTCATCGTGATCGCCGCCGCCCTCACTGTGCTCATCGACATCGCCGCC
GCCCTCACCGTCCTCATCGTCATCACTGCTCTCCGCGCCCGAGTGCTCCT
CTTCCTGCTCCCCATTGCCCTCAGCTTCCCGCTCCTGCTCCTTCCGCCGC
AGGCGCACCGCGCTCCGCTGCTGCAGCGGCAGCGGAGCGTGGTGCGCGGG
GAGCAGGTGAAGCCGACGGCGACGTTGGCGCGCGGGGAGCAGCAGGTGAA
GCCCACGGCGGCGCTGGCGCGCCGGGAGCAGGTAAAGCCGACGGCAGCGC
TGGCGCGCGCGGAGCCAGTGGCTGCGCCGGTGCTGCTGCCGCAGGAGATA
TATTTGAAGCCGACGACGCCGTCCGCGGGCGGGGAGCAGGTGAAGCCGCC
GGCGCTGTCGGTGTGCGTGGAGCAGGTGCAGCCGTCGGCGCCGCTCGCGT
GCGGGGAGCAGGTGAAGCCGATGGCGGCGCAGGTGAAGCCGACGACGGTG
CAGCCGCCAGCGCCGCTCGCGTGCACGGAGCAGGTGAACCAGACGGCGGC
ACAGGTGAACAAGCCGACGGCGACGCTGGCGCGCGCAGAGCTGGTGGCTG
CGCCGCTCGCGTGCGGGGAGCAGGTGCAGCCGCCGGCGCCACTCGAGCAT
GTGGAGCAGGCGAAGCCGTCAGCGTTGCCGGCGCACTCAGAGCCGGTGCA
GTCACCGGCGCACGCGGAGCCGGTGCAGCCGGCGGCGCCGGTCTGGCGCG
GGGAGCAGGTGCAGCTGCCAACGCTGCTGCCACAGGGGGACCAGGTGCAG
CCACCAGCGCCGCTGCCGCGGGGAGAGCCGGTGAAGCCGATGGCGCTGCT
GCCTCGGGAGGAACCGGTGAAGCCGACGGCACCGCTGCCGTGGGGGGGGG
CAGAGAAGCCGAATGCGCGTGCACCGGCTCTGCAGGCCCACCAGCAGCGG
CAGAAGGCGCAGGAGAAGCATCCGGTGCCATAG back to top
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