Trimin1|5329|CE5328_122 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|5329
Unique NameTrimin1|5329|CE5328_122
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length150
Homology
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A835ZK23_9STRA (Ribosomal protein L13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK23_9STRA)

HSP 1 Score: 307 bits (786), Expect = 7.390e-106
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0
Query:    1 MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGPDD 149
            MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGPDD
Sbjct:    1 MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGPDD 149          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: D8LST0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LST0_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 9.470e-59
Identity = 86/127 (67.72%), Postives = 101/127 (79.53%), Query Frame = 0
Query:   11 SHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDL 137
            +H+  WHL+DA  QIVGRLA QIAP++ GKHKPT+ PN  CGD+VVV+NA  V+FTG KW  KVYRWHSG+PGGLKER    QL R+PEEILRRAVMGMLPKN LR RM+ +L IY GP+HPH+  L
Sbjct:   10 NHKAKWHLIDASGQIVGRLAAQIAPIIRGKHKPTFCPNDDCGDVVVVVNANAVEFTGNKWQKKVYRWHSGFPGGLKERPADDQLVRKPEEILRRAVMGMLPKNSLRKRMVTKLLIYPGPSHPHDDRL 136          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A7S2UNE7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNE7_9STRA)

HSP 1 Score: 177 bits (449), Expect = 4.860e-54
Identity = 79/123 (64.23%), Postives = 100/123 (81.30%), Query Frame = 0
Query:   16 WHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMIL-QLKIYEGPAHPHEGDL 137
            WHLVDA+ Q VGRLATQ+AP+L GKHKPTY P+  CGDIVV+INA  V F+GKKW DK+YRWH+G+PGGLK+RT K+ L+R+PE+IL++A++GML + KLR + I  +LKIY GP HPH   L
Sbjct:   20 WHLVDAQSQTVGRLATQLAPILKGKHKPTYKPHTDCGDIVVIINAEKVHFSGKKWNDKLYRWHTGFPGGLKQRTAKEMLQRKPEDILKKAILGMLSRTKLRHKYIEPRLKIYTGPIHPHSAQL 142          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A7S3Q0X2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0X2_9STRA)

HSP 1 Score: 174 bits (440), Expect = 7.760e-53
Identity = 80/129 (62.02%), Postives = 99/129 (76.74%), Query Frame = 0
Query:   10 RSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMIL-QLKIYEGPAHPHEGDL 137
            RS +  WH+VDA  Q VGRLA  IAPLL GKHKPTY PN  CGD VV++NA  V FTGKKW DK+YRWH+G+PGGLK+R  K+ LER+PE+IL++A++GM+ +N LR + I  +LKIY GP HPH G L
Sbjct:    6 RSLQRAWHIVDASTQTVGRLAANIAPLLKGKHKPTYRPNGDCGDYVVIVNAEKVNFTGKKWNDKLYRWHTGFPGGLKQRRAKEMLERQPEKILKKAILGMIHRNNLRHKYIEPRLKIYSGPNHPHTGQL 134          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: F0WMW5_9STRA (50S ribosomal protein L13 putative n=2 Tax=Albugo TaxID=65356 RepID=F0WMW5_9STRA)

HSP 1 Score: 171 bits (432), Expect = 5.100e-52
Identity = 80/129 (62.02%), Postives = 98/129 (75.97%), Query Frame = 0
Query:   16 WHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNIL 144
            WH+VDAK QIVGRLA+Q+AP+L GKHKPTY+PNV CGD +VVINA D+ FTG KW  K+YRWH+G+PGGLKERT K+   R+PEEILR+AV GMLPKNK+R   I +LKI+    H  +  +     IL
Sbjct:   14 WHVVDAKGQIVGRLASQLAPILCGKHKPTYAPNVDCGDHLVVINAKDLVFTGDKWNQKLYRWHTGHPGGLKERTAKEMFARKPEEILRKAVYGMLPKNKMRKLQIQKLKIFLDEEHDFQDKVGTNPVIL 142          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A3F2S0U4_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S0U4_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.090e-51
Identity = 74/122 (60.66%), Postives = 100/122 (81.97%), Query Frame = 0
Query:   10 RSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAH 131
            ++ + +WH+VDAK Q++GRLA+Q+AP+L GKHKPTY+PNV CGD VVVINA D++ TG KW +K+YRWH+G+PGGLK+RT K   ER+PEE+LR+AV GMLPKN++R+    +LKI+ G  H
Sbjct:    6 QASKVVWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIELTGNKWNNKLYRWHTGHPGGLKQRTAKDLFERKPEEVLRKAVFGMLPKNRMRALQDKKLKIFLGDEH 127          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: A0A2D4BZ50_PYTIN (Mitochondrial/chloroplast ribosomal protein L13 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4BZ50_PYTIN)

HSP 1 Score: 169 bits (429), Expect = 1.460e-51
Identity = 77/137 (56.20%), Postives = 102/137 (74.45%), Query Frame = 0
Query:    8 LRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNIL 144
            + ++ + MWH+VDAK Q++GRLA+Q+AP+L GKHKPTY+PNV CGD VVVINA D+  TG KW  K+YRWH+G+PGGLK+RT ++  ER+PEE+LRRAV GMLPKNK+R     +LKI+    H  +  +     IL
Sbjct:    6 IAKASKVMWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDYVVVINAKDIVLTGDKWDQKLYRWHTGHPGGLKQRTAREMFERKPEEVLRRAVFGMLPKNKMRKLQDQKLKIFLDEEHDFKEQVGENPVIL 142          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: H3G8X3_PHYRM (Uncharacterized protein n=24 Tax=Peronosporaceae TaxID=4777 RepID=H3G8X3_PHYRM)

HSP 1 Score: 168 bits (426), Expect = 3.910e-51
Identity = 73/124 (58.87%), Postives = 100/124 (80.65%), Query Frame = 0
Query:    8 LRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAH 131
            + ++ +  WH+VDAK Q++GRLA+Q+AP+L GKHKPTY+PNV CGD VVVINA D+  TG KW +K+YRWH+G+PGGLK+RT K+  ER+PE++LR+AV GMLPKN++R+    +LKI+ G  H
Sbjct:    4 IAQASKVAWHVVDAKGQVLGRLASQLAPILRGKHKPTYAPNVDCGDFVVVINAKDIVLTGNKWNNKLYRWHTGHPGGLKQRTAKELFERKPEDVLRKAVFGMLPKNRMRALQDKKLKIFMGDEH 127          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: T0R0U4_SAPDV (50S ribosomal protein L13 n=3 Tax=Saprolegniaceae TaxID=4764 RepID=T0R0U4_SAPDV)

HSP 1 Score: 168 bits (426), Expect = 4.040e-51
Identity = 77/132 (58.33%), Postives = 100/132 (75.76%), Query Frame = 0
Query:   13 RPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNIL 144
            R  +H+VDAK Q+VGRLA+Q+AP+L GKHKPTY+PNV CGD+VVV+NA D+  TG KW DK+YRWH+G+PGGLK RT KQ  E+   ++LR+AVMGMLPKNK+R+  I +LKI+ G  H  + +L      L
Sbjct:   10 RIAYHVVDAKGQVVGRLASQLAPILRGKHKPTYAPNVDCGDVVVVLNAKDIVLTGNKWDDKLYRWHTGFPGGLKTRTAKQIKEKDEGDVLRKAVMGMLPKNKMRALQIAKLKIFAGDEHTFQAELGENPKFL 141          
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Match: B8BX67_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX67_THAPS)

HSP 1 Score: 168 bits (425), Expect = 5.550e-51
Identity = 81/129 (62.79%), Postives = 94/129 (72.87%), Query Frame = 0
Query:   16 WHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVACGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEEILRRAVMGMLPKNKLR-SRMILQLKIYEGPAHPHEGDLRGKSNI 143
            WHLVDA  Q VGRLAT IAP+L GKHKPTY PN  CGD VV++NA  V  +G KW DK+YRWH+GYPGGLKER  K  LER+PE ILR+A++GML +N LR S M  +LKIY G  HPHE  L    N+
Sbjct:   12 WHLVDATSQTVGRLATTIAPILKGKHKPTYRPNGDCGDYVVIVNADKVHLSGNKWDDKIYRWHTGYPGGLKERPAKDMLERKPEFILRKAILGMLYRNNLRESYMEPRLKIYAGSEHPHEAQLPRGVNV 140          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|5329 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZK23_9STRA7.390e-106100.00Ribosomal protein L13 n=1 Tax=Tribonema minus TaxI... [more]
D8LST0_ECTSI9.470e-5967.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2UNE7_9STRA4.860e-5464.23Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S3Q0X2_9STRA7.760e-5362.02Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
F0WMW5_9STRA5.100e-5262.0250S ribosomal protein L13 putative n=2 Tax=Albugo ... [more]
A0A3F2S0U4_9STRA1.090e-5160.66Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A2D4BZ50_PYTIN1.460e-5156.20Mitochondrial/chloroplast ribosomal protein L13 n=... [more]
H3G8X3_PHYRM3.910e-5158.87Uncharacterized protein n=24 Tax=Peronosporaceae T... [more]
T0R0U4_SAPDV4.040e-5158.3350S ribosomal protein L13 n=3 Tax=Saprolegniaceae ... [more]
B8BX67_THAPS5.550e-5162.79Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005823Ribosomal protein L13, bacterial-typeTIGRFAMTIGR01066TIGR01066coord: 14..134
e-value: 1.7E-51
score: 171.7
IPR036899Ribosomal protein L13 superfamilyGENE3D3.90.1180.10Ribosomal protein L13coord: 9..145
e-value: 8.5E-61
score: 206.6
IPR036899Ribosomal protein L13 superfamilySUPERFAMILY52161Ribosomal protein L13coord: 12..135
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 15..132
e-value: 4.3E-50
score: 168.8
IPR005822Ribosomal protein L13PIRSFPIRSF002181RPL13p_RPL13Aa_RPL16e_RPL13ocoord: 1..143
e-value: 4.3E-52
score: 174.2
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 13..135
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 16..138
score: 28.985029
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 16..129
e-value: 1.0508E-62
score: 186.171
NoneNo IPR availablePANTHERPTHR11545:SF239S RIBOSOMAL PROTEIN L13, MITOCHONDRIALcoord: 13..135

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_105contigContig_105:493654..494842 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|5329mRNA_12764Tribonema minus UTEX_B_3156 mRNAContig_105 493535..494885 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|5329|CE5328_122 ID=Trimin1|5329|CE5328_122|Name=jgi.p|Trimin1|5329|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=150bp
MSVANVLLRRSHRPMWHLVDAKDQIVGRLATQIAPLLVGKHKPTYSPNVA
CGDIVVVINAADVQFTGKKWTDKVYRWHSGYPGGLKERTPKQQLERRPEE
ILRRAVMGMLPKNKLRSRMILQLKIYEGPAHPHEGDLRGKSNILQGPDD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005823Ribosomal_L13_bac-type
IPR036899Ribosomal_L13_sf
IPR005822Ribosomal_L13