Trimin1|351976|estExt_Genemark1.C_Ctg_1040069 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351976
Unique NameTrimin1|351976|estExt_Genemark1.C_Ctg_1040069
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length224
Homology
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA)

HSP 1 Score: 427 bits (1097), Expect = 7.810e-151
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 0
Query:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR 223
            MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR
Sbjct:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR 223          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 6.190e-65
Identity = 116/216 (53.70%), Postives = 137/216 (63.43%), Query Frame = 0
Query:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD---------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSADAALHRACMFAKEELR 191
            + +  ++E V G      Q VPLST+RQ S+IPK E  P HQP+  A  WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW  V+EWE  R                        PKL  F GRP D SPKAW K+ +LGY+PPFDRHDWVV+ A G E RYVIDFYAGK  P    PVA+HLDVRPALDS DA + R  MF   E+R
Sbjct:  176 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYSREVR 391          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI)

HSP 1 Score: 202 bits (513), Expect = 3.160e-59
Identity = 117/253 (46.25%), Postives = 139/253 (54.94%), Query Frame = 0
Query:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------------------------------AMRGGD----------------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSADAALHRACMFAKEELR 191
            + +  ++E V G      Q VPLST+RQ S+IPK E  P HQP+  A  WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW  V+EWE                                RGG+                            PKL  F GRP D SPKAW K+ + GY+PPFDRHDWVV+ A G E RYVIDFYAGK  P    PVA+HLDVRPALDS DA + R  MF   E+R
Sbjct:  162 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYGREVR 414          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA)

HSP 1 Score: 198 bits (503), Expect = 3.360e-59
Identity = 107/169 (63.31%), Postives = 124/169 (73.37%), Query Frame = 0
Query:   19 QTVPLSTARQCSTIPKGEVTPQHQPEGA-NVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDP-KLKEFRGRPNDISPKA-WFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTPE--RPVALHLDVRPALDSADAALHR 181
            Q VPLST+R+ S+IPK + TP+HQP+ A + WVYPSEQQYFNAMK KG++   QDV I+LAIHNAVNEQGW KV EWE   G  P KLK F GRP D+SPKA W    + GY  PFDRHDWVVE A G EVRYVIDFY G+   +  +PV++HLDVRPALDS  A   R
Sbjct:   96 QAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLW--MCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMR 262          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA)

HSP 1 Score: 195 bits (496), Expect = 1.250e-58
Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = 0
Query:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRG-GDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAG----KGTPERPVALHLDVRPALDSADAALHR 181
            + +TN+++ V        Q   LS  R  STIPKG+ TP+HQP+    WVYPSEQQY+NAMKRKG+   E D+P VL IHN VNE+GWS+V+EWEA  G  +PKLK+F G+P  +SPKA    N++GY  PFDRHDW+VE   G+EVRYVIDFY G      +  +PV+++LDVRPA DS  A + R
Sbjct:   61 LYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQPKATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSGFPNPKLKKFMGKPTQLSPKARL-LNMIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADSVSAIVAR 246          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A067CYF5_SAPPC (Holocytochrome c-type synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYF5_SAPPC)

HSP 1 Score: 194 bits (493), Expect = 1.900e-58
Identity = 102/194 (52.58%), Postives = 129/194 (66.49%), Query Frame = 0
Query:    7 DESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------AMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKP-PFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM-FAKEELRL 192
            D+SV+ G     Q+VPLST R  STIP G   P HQ EG   W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E E      A   GDPKL  F GRP D +PKA    N+ G    PFDRHDW+++  G EVRYVIDFY G  TP +P+++++DVRPALD+   A+ R  M F K  L L
Sbjct:   57 DQSVAKG-----QSVPLSTQRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHGDAYTRGDPKLVRFMGRPKDFTPKARL-LNLFGMANLPFDRHDWIIDRNGEEVRYVIDFYTGHPTPGKPISVYMDVRPALDNIGNAVDRLRMQFHKNVLPL 244          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A7J7Q1K7_9CHLO (Holocytochrome c-type synthase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q1K7_9CHLO)

HSP 1 Score: 191 bits (486), Expect = 2.430e-58
Identity = 96/169 (56.80%), Postives = 118/169 (69.82%), Query Frame = 0
Query:   23 LSTARQCSTIP-KGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD----PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFA 186
            L+T RQ S+IP      PQHQ +GA+VW+YPSEQQ++NAMKRKGW+  E D+  V+AIHN VNE+ W  V  WEA+   D    P+L  F+GRP+D SPKA    N+LG+K PFDRHDW+V+  GREVRYVIDFY+G   P  P ++HLDVRPALDS  A   R  M A
Sbjct:   14 LNTQRQRSSIPIAASQLPQHQQDGADVWMYPSEQQFYNAMKRKGWDPAEPDMQRVVAIHNTVNERAWRHVLAWEALHAADCGQPPRLVRFQGRPSDFSPKARL-LNMLGFKLPFDRHDWIVDRCGREVRYVIDFYSGAPQPGVPASMHLDVRPALDSLQAVWDRLRMQA 181          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A1V9Z395_9STRA (Holocytochrome c-type synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z395_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.270e-57
Identity = 92/173 (53.18%), Postives = 120/173 (69.36%), Query Frame = 0
Query:   19 QTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------AMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKP-PFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM 184
            Q+ PLST R  STIP G   P HQ EG   W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E E      A    +PKL  F GRP D++PKA    NV G    PFDRHDW+V+  G E+RYVIDFY+G+ TP +P+++++DVRPALD+   A+ R  M
Sbjct:   51 QSAPLSTTRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHADAYVNAEPKLVRFMGRPKDLTPKARL-LNVFGMANLPFDRHDWIVDRNGEEIRYVIDFYSGQPTPGKPISVYMDVRPALDNVGNAVDRLRM 222          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: W4G7Q4_9STRA (Holocytochrome c-type synthase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7Q4_9STRA)

HSP 1 Score: 191 bits (484), Expect = 2.530e-57
Identity = 93/176 (52.84%), Postives = 117/176 (66.48%), Query Frame = 0
Query:   18 KQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD---------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM 184
            KQ VPLST R  STIP G   PQHQ EG   W YPSEQQYFNAMKRKGW+ +E+D+ ++++IHN +NE+GWS V  +E     D         PKL  F GRP D SPKA F   +     PFDRHDW+V+  G EVRYVIDFY+G+  P +P+++++DVRPALD+   A+ R  M
Sbjct:   48 KQKVPLSTHRVQSTIPMGSFVPQHQTEGQQTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWSDVVAFERTLHPDAYGSDKCPEPKLVRFMGRPKDFSPKARFLNTIGVANLPFDRHDWIVDRNGTEVRYVIDFYSGQPVPGKPLSVYMDVRPALDTVQNAVDRVRM 223          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A485KA81_9STRA (Holocytochrome c-type synthase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KA81_9STRA)

HSP 1 Score: 190 bits (483), Expect = 2.980e-57
Identity = 97/183 (53.01%), Postives = 120/183 (65.57%), Query Frame = 0
Query:   18 KQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD-------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM-FAKEELRL 192
            KQ  PLST R  STIP G   P HQ EG   W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E+E     D       PKL  F GRP D SPKA F         PFDRHDW+V+  G EVRYVIDFY+G+  P +PV++ +DVRPALD+ + A+ R  M F K  L L
Sbjct:   43 KQKTPLSTHRVPSTIPMGSFVPAHQTEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEYEKALHPDAYADNAAPKLVRFMGRPKDFSPKARFLNTFGLANLPFDRHDWIVDRNGTEVRYVIDFYSGQPVPGKPVSVFMDVRPALDTVENAVDRVRMQFQKSILPL 225          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZPE3_9STRA7.810e-151100.00Holocytochrome c-type synthase n=1 Tax=Tribonema m... [more]
A0A6H5L219_9PHAE6.190e-6553.70Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
D8LGP6_ECTSI3.160e-5946.25Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
W7TBT6_9STRA3.360e-5963.31Holocytochrome c-type synthase n=2 Tax=Monodopsida... [more]
A0A7S3HNG9_9STRA1.250e-5853.48Holocytochrome c-type synthase n=1 Tax=Spumella el... [more]
A0A067CYF5_SAPPC1.900e-5852.58Holocytochrome c-type synthase n=2 Tax=Saprolegnia... [more]
A0A7J7Q1K7_9CHLO2.430e-5856.80Holocytochrome c-type synthase n=1 Tax=Scenedesmus... [more]
A0A1V9Z395_9STRA2.270e-5753.18Holocytochrome c-type synthase n=1 Tax=Achlya hypo... [more]
W4G7Q4_9STRA2.530e-5752.84Holocytochrome c-type synthase n=4 Tax=Aphanomyces... [more]
A0A485KA81_9STRA2.980e-5753.01Holocytochrome c-type synthase n=1 Tax=Aphanomyces... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000511Holocytochrome c/c1 synthasePFAMPF01265Cyto_heme_lyasecoord: 101..182
e-value: 2.8E-23
score: 82.9
coord: 18..96
e-value: 2.1E-21
score: 76.7
IPR000511Holocytochrome c/c1 synthasePANTHERPTHR12743CYTOCHROME C1 HEME LYASEcoord: 3..185
IPR000511Holocytochrome c/c1 synthasePROSITEPS00821CYTO_HEME_LYASE_1coord: 80..95
IPR000511Holocytochrome c/c1 synthasePROSITEPS00822CYTO_HEME_LYASE_2coord: 130..136
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..223
NoneNo IPR availablePANTHERPTHR12743:SF6CYTOCHROME C HEME LYASEcoord: 3..185

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:432485..433438 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351976mRNA_10233Tribonema minus UTEX_B_3156 mRNAContig_104 432294..433479 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351976|estExt_Genemark1.C_Ctg_1040069 ID=Trimin1|351976|estExt_Genemark1.C_Ctg_1040069|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp
MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWV
YPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGG
DPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVID
FYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTL
GGLAAAAARDGGQPPDDRPPPAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000511Holocyt_c/c1_synthase