mRNA_10233 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA) HSP 1 Score: 427 bits (1098), Expect = 1.130e-149 Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 3
Query: 42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR 710
MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR
Sbjct: 1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR 223
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE) HSP 1 Score: 216 bits (550), Expect = 6.200e-64 Identity = 116/216 (53.70%), Postives = 137/216 (63.43%), Query Frame = 3
Query: 42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD---------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSADAALHRACMFAKEELR 614
+ + ++E V G Q VPLST+RQ S+IPK E P HQP+ A WVYPSEQQY+NA+KRKG++A D+P LAIHNAVNE+GW V+EWE R PKL F GRP D SPKAW K+ +LGY+PPFDRHDWVV+ A G E RYVIDFYAGK P PVA+HLDVRPALDS DA + R MF E+R
Sbjct: 176 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYSREVR 391
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI) HSP 1 Score: 202 bits (514), Expect = 3.010e-58 Identity = 117/253 (46.25%), Postives = 139/253 (54.94%), Query Frame = 3
Query: 42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------------------------------AMRGGD----------------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSADAALHRACMFAKEELR 614
+ + ++E V G Q VPLST+RQ S+IPK E P HQP+ A WVYPSEQQY+NA+KRKG++A D+P LAIHNAVNE+GW V+EWE RGG+ PKL F GRP D SPKAW K+ + GY+PPFDRHDWVV+ A G E RYVIDFYAGK P PVA+HLDVRPALDS DA + R MF E+R
Sbjct: 162 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYGREVR 414
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA) HSP 1 Score: 198 bits (503), Expect = 4.440e-58 Identity = 107/169 (63.31%), Postives = 124/169 (73.37%), Query Frame = 3
Query: 96 QTVPLSTARQCSTIPKGEVTPQHQPEGA-NVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDP-KLKEFRGRPNDISPKA-WFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTPE--RPVALHLDVRPALDSADAALHR 584
Q VPLST+R+ S+IPK + TP+HQP+ A + WVYPSEQQYFNAMK KG++ QDV I+LAIHNAVNEQGW KV EWE G P KLK F GRP D+SPKA W + GY PFDRHDWVVE A G EVRYVIDFY G+ + +PV++HLDVRPALDS A R
Sbjct: 96 QAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLW--MCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMR 262
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA) HSP 1 Score: 196 bits (497), Expect = 1.150e-57 Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = 3
Query: 42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRG-GDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAG----KGTPERPVALHLDVRPALDSADAALHR 584
+ +TN+++ V Q LS R STIPKG+ TP+HQP+ WVYPSEQQY+NAMKRKG+ E D+P VL IHN VNE+GWS+V+EWEA G +PKLK+F G+P +SPKA N++GY PFDRHDW+VE G+EVRYVIDFY G + +PV+++LDVRPA DS A + R
Sbjct: 61 LYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQPKATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSGFPNPKLKKFMGKPTQLSPKARL-LNMIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADSVSAIVAR 246
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A067CYF5_SAPPC (Holocytochrome c-type synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYF5_SAPPC) HSP 1 Score: 194 bits (493), Expect = 2.460e-57 Identity = 102/194 (52.58%), Postives = 129/194 (66.49%), Query Frame = 3
Query: 60 DESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------AMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKP-PFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM-FAKEELRL 617
D+SV+ G Q+VPLST R STIP G P HQ EG W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E E A GDPKL F GRP D +PKA N+ G PFDRHDW+++ G EVRYVIDFY G TP +P+++++DVRPALD+ A+ R M F K L L
Sbjct: 57 DQSVAKG-----QSVPLSTQRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHGDAYTRGDPKLVRFMGRPKDFTPKARL-LNLFGMANLPFDRHDWIIDRNGEEVRYVIDFYTGHPTPGKPISVYMDVRPALDNIGNAVDRLRMQFHKNVLPL 244
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A7J7Q1K7_9CHLO (Holocytochrome c-type synthase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q1K7_9CHLO) HSP 1 Score: 191 bits (486), Expect = 3.110e-57 Identity = 96/169 (56.80%), Postives = 118/169 (69.82%), Query Frame = 3
Query: 108 LSTARQCSTIP-KGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD----PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFA 599
L+T RQ S+IP PQHQ +GA+VW+YPSEQQ++NAMKRKGW+ E D+ V+AIHN VNE+ W V WEA+ D P+L F+GRP+D SPKA N+LG+K PFDRHDW+V+ GREVRYVIDFY+G P P ++HLDVRPALDS A R M A
Sbjct: 14 LNTQRQRSSIPIAASQLPQHQQDGADVWMYPSEQQFYNAMKRKGWDPAEPDMQRVVAIHNTVNERAWRHVLAWEALHAADCGQPPRLVRFQGRPSDFSPKARL-LNMLGFKLPFDRHDWIVDRCGREVRYVIDFYSGAPQPGVPASMHLDVRPALDSLQAVWDRLRMQA 181
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A1V9Z395_9STRA (Holocytochrome c-type synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z395_9STRA) HSP 1 Score: 191 bits (485), Expect = 2.900e-56 Identity = 92/173 (53.18%), Postives = 120/173 (69.36%), Query Frame = 3
Query: 96 QTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------AMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKP-PFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM 593
Q+ PLST R STIP G P HQ EG W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E E A +PKL F GRP D++PKA NV G PFDRHDW+V+ G E+RYVIDFY+G+ TP +P+++++DVRPALD+ A+ R M
Sbjct: 51 QSAPLSTTRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHADAYVNAEPKLVRFMGRPKDLTPKARL-LNVFGMANLPFDRHDWIVDRNGEEIRYVIDFYSGQPTPGKPISVYMDVRPALDNVGNAVDRLRM 222
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: W4G7Q4_9STRA (Holocytochrome c-type synthase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7Q4_9STRA) HSP 1 Score: 191 bits (484), Expect = 3.220e-56 Identity = 93/176 (52.84%), Postives = 117/176 (66.48%), Query Frame = 3
Query: 93 KQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD---------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM 593
KQ VPLST R STIP G PQHQ EG W YPSEQQYFNAMKRKGW+ +E+D+ ++++IHN +NE+GWS V +E D PKL F GRP D SPKA F + PFDRHDW+V+ G EVRYVIDFY+G+ P +P+++++DVRPALD+ A+ R M
Sbjct: 48 KQKVPLSTHRVQSTIPMGSFVPQHQTEGQQTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWSDVVAFERTLHPDAYGSDKCPEPKLVRFMGRPKDFSPKARFLNTIGVANLPFDRHDWIVDRNGTEVRYVIDFYSGQPVPGKPLSVYMDVRPALDTVQNAVDRVRM 223
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A485KA81_9STRA (Holocytochrome c-type synthase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KA81_9STRA) HSP 1 Score: 190 bits (483), Expect = 3.800e-56 Identity = 97/183 (53.01%), Postives = 120/183 (65.57%), Query Frame = 3
Query: 93 KQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD-------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM-FAKEELRL 617
KQ PLST R STIP G P HQ EG W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E+E D PKL F GRP D SPKA F PFDRHDW+V+ G EVRYVIDFY+G+ P +PV++ +DVRPALD+ + A+ R M F K L L
Sbjct: 43 KQKTPLSTHRVPSTIPMGSFVPAHQTEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEYEKALHPDAYADNAAPKLVRFMGRPKDFSPKARFLNTFGLANLPFDRHDWIVDRNGTEVRYVIDFYSGQPVPGKPVSVFMDVRPALDTVENAVDRVRMQFQKSILPL 225 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10233 ID=mRNA_10233|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=904bp|location=Sequence derived from alignment at Contig_104:432294..433479- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCCCGGTGTGTACGTGTGTGTCCTGATCAGTAAAGGGAGCGATGGCGTCGback to top protein sequence of jgi.p|Trimin1|351976 >Trimin1|351976|estExt_Genemark1.C_Ctg_1040069 ID=Trimin1|351976|estExt_Genemark1.C_Ctg_1040069|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVback to top mRNA from alignment at Contig_104:432294..433479- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10233 ID=mRNA_10233|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1186bp|location=Sequence derived from alignment at Contig_104:432294..433479- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_104:432294..433479- >mRNA_10233 ID=mRNA_10233|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=672bp|location=Sequence derived from alignment at Contig_104:432294..433479- (Tribonema minus UTEX_B_3156 )back to top |