mRNA_10233 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351976
Unique NamemRNA_10233
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A835ZPE3_9STRA (Holocytochrome c-type synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPE3_9STRA)

HSP 1 Score: 427 bits (1098), Expect = 1.130e-149
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 3
Query:   42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR 710
            MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR
Sbjct:    1 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTLGGLAAXXXXXXXXXXXXXXXPAR 223          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A6H5L219_9PHAE (Holocytochrome c-type synthase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L219_9PHAE)

HSP 1 Score: 216 bits (550), Expect = 6.200e-64
Identity = 116/216 (53.70%), Postives = 137/216 (63.43%), Query Frame = 3
Query:   42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD---------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSADAALHRACMFAKEELR 614
            + +  ++E V G      Q VPLST+RQ S+IPK E  P HQP+  A  WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW  V+EWE  R                        PKL  F GRP D SPKAW K+ +LGY+PPFDRHDWVV+ A G E RYVIDFYAGK  P    PVA+HLDVRPALDS DA + R  MF   E+R
Sbjct:  176 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERARXXXXXXXXXXXXXXXXXXXGVPAAPKLLRFTGRPQDTSPKAWVKSTLLGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYSREVR 391          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: D8LGP6_ECTSI (Holocytochrome c-type synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP6_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 3.010e-58
Identity = 117/253 (46.25%), Postives = 139/253 (54.94%), Query Frame = 3
Query:   42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEG-ANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------------------------------AMRGGD----------------------------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTP--ERPVALHLDVRPALDSADAALHRACMFAKEELR 614
            + +  ++E V G      Q VPLST+RQ S+IPK E  P HQP+  A  WVYPSEQQY+NA+KRKG++A   D+P  LAIHNAVNE+GW  V+EWE                                RGG+                            PKL  F GRP D SPKAW K+ + GY+PPFDRHDWVV+ A G E RYVIDFYAGK  P    PVA+HLDVRPALDS DA + R  MF   E+R
Sbjct:  162 LYNARNNEYVYGQEVAAGQEVPLSTSRQRSSIPKAEFNPDHQPQKEAEKWVYPSEQQYYNAIKRKGYKASAADMPSTLAIHNAVNEKGWEMVQEWERAHAEAAXXXXXXXXXXXXXXXXXXXXXXEGFRGGEGLHPGAPQIGTPPXXXXXXXXXXVGVPAPKLFRFTGRPQDTSPKAWVKSTLFGYRPPFDRHDWVVKRADGTEARYVIDFYAGKAPPGSSMPVAMHLDVRPALDSYDAVVDRTRMFYGREVR 414          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: W7TBT6_9STRA (Holocytochrome c-type synthase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TBT6_9STRA)

HSP 1 Score: 198 bits (503), Expect = 4.440e-58
Identity = 107/169 (63.31%), Postives = 124/169 (73.37%), Query Frame = 3
Query:   96 QTVPLSTARQCSTIPKGEVTPQHQPEGA-NVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGDP-KLKEFRGRPNDISPKA-WFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAGKGTPE--RPVALHLDVRPALDSADAALHR 584
            Q VPLST+R+ S+IPK + TP+HQP+ A + WVYPSEQQYFNAMK KG++   QDV I+LAIHNAVNEQGW KV EWE   G  P KLK F GRP D+SPKA W    + GY  PFDRHDWVVE A G EVRYVIDFY G+   +  +PV++HLDVRPALDS  A   R
Sbjct:   96 QAVPLSTSREISSIPKSDFTPKHQPKWAGDKWVYPSEQQYFNAMKSKGFDPLPQDVGIILAIHNAVNEQGWRKVLEWEGGLGSTPPKLKRFMGRPQDLSPKAAWLW--MCGYNKPFDRHDWVVERADGSEVRYVIDFYTGQTDVKDPKPVSMHLDVRPALDSMAAVRMR 262          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A7S3HNG9_9STRA (Holocytochrome c-type synthase n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HNG9_9STRA)

HSP 1 Score: 196 bits (497), Expect = 1.150e-57
Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = 3
Query:   42 MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRG-GDPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESA-GREVRYVIDFYAG----KGTPERPVALHLDVRPALDSADAALHR 584
            + +TN+++ V        Q   LS  R  STIPKG+ TP+HQP+    WVYPSEQQY+NAMKRKG+   E D+P VL IHN VNE+GWS+V+EWEA  G  +PKLK+F G+P  +SPKA    N++GY  PFDRHDW+VE   G+EVRYVIDFY G      +  +PV+++LDVRPA DS  A + R
Sbjct:   61 LYNTNANDFVFDQSRTADQKANLSVKRATSTIPKGDFTPEHQPKATEKWVYPSEQQYYNAMKRKGYNPSEADIPAVLFIHNHVNEKGWSQVKEWEAYSGFPNPKLKKFMGKPTQLSPKARL-LNMIGYSKPFDRHDWIVERPDGQEVRYVIDFYGGARNINPSKPQPVSIYLDVRPAADSVSAIVAR 246          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A067CYF5_SAPPC (Holocytochrome c-type synthase n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYF5_SAPPC)

HSP 1 Score: 194 bits (493), Expect = 2.460e-57
Identity = 102/194 (52.58%), Postives = 129/194 (66.49%), Query Frame = 3
Query:   60 DESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------AMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKP-PFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM-FAKEELRL 617
            D+SV+ G     Q+VPLST R  STIP G   P HQ EG   W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E E      A   GDPKL  F GRP D +PKA    N+ G    PFDRHDW+++  G EVRYVIDFY G  TP +P+++++DVRPALD+   A+ R  M F K  L L
Sbjct:   57 DQSVAKG-----QSVPLSTQRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHGDAYTRGDPKLVRFMGRPKDFTPKARL-LNLFGMANLPFDRHDWIIDRNGEEVRYVIDFYTGHPTPGKPISVYMDVRPALDNIGNAVDRLRMQFHKNVLPL 244          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A7J7Q1K7_9CHLO (Holocytochrome c-type synthase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7Q1K7_9CHLO)

HSP 1 Score: 191 bits (486), Expect = 3.110e-57
Identity = 96/169 (56.80%), Postives = 118/169 (69.82%), Query Frame = 3
Query:  108 LSTARQCSTIP-KGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD----PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACMFA 599
            L+T RQ S+IP      PQHQ +GA+VW+YPSEQQ++NAMKRKGW+  E D+  V+AIHN VNE+ W  V  WEA+   D    P+L  F+GRP+D SPKA    N+LG+K PFDRHDW+V+  GREVRYVIDFY+G   P  P ++HLDVRPALDS  A   R  M A
Sbjct:   14 LNTQRQRSSIPIAASQLPQHQQDGADVWMYPSEQQFYNAMKRKGWDPAEPDMQRVVAIHNTVNERAWRHVLAWEALHAADCGQPPRLVRFQGRPSDFSPKARL-LNMLGFKLPFDRHDWIVDRCGREVRYVIDFYSGAPQPGVPASMHLDVRPALDSLQAVWDRLRMQA 181          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A1V9Z395_9STRA (Holocytochrome c-type synthase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z395_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.900e-56
Identity = 92/173 (53.18%), Postives = 120/173 (69.36%), Query Frame = 3
Query:   96 QTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWE------AMRGGDPKLKEFRGRPNDISPKAWFKTNVLGYKP-PFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM 593
            Q+ PLST R  STIP G   P HQ EG   W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E E      A    +PKL  F GRP D++PKA    NV G    PFDRHDW+V+  G E+RYVIDFY+G+ TP +P+++++DVRPALD+   A+ R  M
Sbjct:   51 QSAPLSTTRVASTIPMGSYVPAHQKEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEMEKTLHADAYVNAEPKLVRFMGRPKDLTPKARL-LNVFGMANLPFDRHDWIVDRNGEEIRYVIDFYSGQPTPGKPISVYMDVRPALDNVGNAVDRLRM 222          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: W4G7Q4_9STRA (Holocytochrome c-type synthase n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G7Q4_9STRA)

HSP 1 Score: 191 bits (484), Expect = 3.220e-56
Identity = 93/176 (52.84%), Postives = 117/176 (66.48%), Query Frame = 3
Query:   93 KQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD---------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM 593
            KQ VPLST R  STIP G   PQHQ EG   W YPSEQQYFNAMKRKGW+ +E+D+ ++++IHN +NE+GWS V  +E     D         PKL  F GRP D SPKA F   +     PFDRHDW+V+  G EVRYVIDFY+G+  P +P+++++DVRPALD+   A+ R  M
Sbjct:   48 KQKVPLSTHRVQSTIPMGSFVPQHQTEGQQTWQYPSEQQYFNAMKRKGWDPEERDMKVIVSIHNTINEKGWSDVVAFERTLHPDAYGSDKCPEPKLVRFMGRPKDFSPKARFLNTIGVANLPFDRHDWIVDRNGTEVRYVIDFYSGQPVPGKPLSVYMDVRPALDTVQNAVDRVRM 223          
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Match: A0A485KA81_9STRA (Holocytochrome c-type synthase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KA81_9STRA)

HSP 1 Score: 190 bits (483), Expect = 3.800e-56
Identity = 97/183 (53.01%), Postives = 120/183 (65.57%), Query Frame = 3
Query:   93 KQTVPLSTARQCSTIPKGEVTPQHQPEGANVWVYPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGGD-------PKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVIDFYAGKGTPERPVALHLDVRPALDSADAALHRACM-FAKEELRL 617
            KQ  PLST R  STIP G   P HQ EG   W YPSEQQYFNAMKRKGW+ QE+D+ ++++IHN +NE+GW++V E+E     D       PKL  F GRP D SPKA F         PFDRHDW+V+  G EVRYVIDFY+G+  P +PV++ +DVRPALD+ + A+ R  M F K  L L
Sbjct:   43 KQKTPLSTHRVPSTIPMGSFVPAHQTEGQETWQYPSEQQYFNAMKRKGWDPQERDMKVIVSIHNTINEKGWAEVVEYEKALHPDAYADNAAPKLVRFMGRPKDFSPKARFLNTFGLANLPFDRHDWIVDRNGTEVRYVIDFYSGQPVPGKPVSVFMDVRPALDTVENAVDRVRMQFQKSILPL 225          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351976 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZPE3_9STRA1.130e-149100.00Holocytochrome c-type synthase n=1 Tax=Tribonema m... [more]
A0A6H5L219_9PHAE6.200e-6453.70Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
D8LGP6_ECTSI3.010e-5846.25Holocytochrome c-type synthase n=1 Tax=Ectocarpus ... [more]
W7TBT6_9STRA4.440e-5863.31Holocytochrome c-type synthase n=2 Tax=Monodopsida... [more]
A0A7S3HNG9_9STRA1.150e-5753.48Holocytochrome c-type synthase n=1 Tax=Spumella el... [more]
A0A067CYF5_SAPPC2.460e-5752.58Holocytochrome c-type synthase n=2 Tax=Saprolegnia... [more]
A0A7J7Q1K7_9CHLO3.110e-5756.80Holocytochrome c-type synthase n=1 Tax=Scenedesmus... [more]
A0A1V9Z395_9STRA2.900e-5653.18Holocytochrome c-type synthase n=1 Tax=Achlya hypo... [more]
W4G7Q4_9STRA3.220e-5652.84Holocytochrome c-type synthase n=4 Tax=Aphanomyces... [more]
A0A485KA81_9STRA3.800e-5653.01Holocytochrome c-type synthase n=1 Tax=Aphanomyces... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:432294..433479 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351976|estExt_Genemark1.C_Ctg_1040069
BRITEko00000,ko00001,ko01000
KEGG rclassRC00727,RC02130
KEGG ReactionR02480
KEGG Pathwayko00860,map00860
KEGG koko:K01764
EC4.4.1.17
GOsGO:0003674,GO:0003824,GO:0004408,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005758,GO:0006464,GO:0006807,GO:0006996,GO:0007005,GO:0007275,GO:0008150,GO:0008152,GO:0009653,GO:0009887,GO:0009987,GO:0016020,GO:0016043,GO:0016829,GO:0016846,GO:0017003,GO:0017004,GO:0017006,GO:0018063,GO:0019538,GO:0019866,GO:0022607,GO:0031090,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0032501,GO:0032502,GO:0034622,GO:0036211,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:1901564
Preferred nameHCCS
Descriptionholocytochrome-c synthase activity
COG categoryH
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3996@1|root,KOG3996@2759|Eukaryota
Evalue5.18e-60
Seed ortholog2880.D8LGP6
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCytochrome c/c1 haem-lyase
Ec32 orthologEc-10_003030.1
TranscriptId352298
TrackFilteredModels1
ProteinId351976
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351976gene_10233Tribonema minus UTEX_B_3156 geneContig_104 432294..433479 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10233_2exon_10233_2Tribonema minus UTEX_B_3156 exonContig_104 432294..433102 -
exon_10233_1exon_10233_1Tribonema minus UTEX_B_3156 exonContig_104 433385..433479 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_10233UTR3_10233Tribonema minus UTEX_B_3156 three_prime_UTRContig_104 432294..432484 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10233CDS_10233Tribonema minus UTEX_B_3156 CDSContig_104 433385..433438 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_10233UTR5_10233Tribonema minus UTEX_B_3156 five_prime_UTRContig_104 433439..433479 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351976Trimin1|351976|estExt_Genemark1.C_Ctg_1040069Tribonema minus UTEX_B_3156 polypeptideContig_104 432485..433438 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10233 ID=mRNA_10233|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=904bp|location=Sequence derived from alignment at Contig_104:432294..433479- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCCCGGTGTGTACGTGTGTGTCCTGATCAGTAAAGGGAGCGATGGCGTCG
ACCAACTCTGATGAGAGCGTCAGTGGCGGCGGCTGTCCAGTGAAGCAGAC
GGTTCCGCTCAGCACCGCCCGGCAGTGCAGCACGATACCCAAAGGCGAGG
TGACCCCGCAGCACCAGCCGGAGGGAGCCAACGTGTGGGTGTACCCCTCG
GAGCAGCAGTACTTCAACGCCATGAAGCGCAAGGGGTGGGAGGCGCAGGA
GCAGGACGTCCCCATCGTTCTGGCGATCCACAACGCCGTCAACGAGCAGG
GCTGGAGCAAGGTGAGAGAGTGGGAGGCCATGCGCGGCGGCGACCCGAAA
CTCAAAGAGTTCCGGGGGCGCCCCAACGACATCAGCCCCAAGGCCTGGTT
CAAGACCAATGTCCTGGGCTACAAGCCGCCCTTCGACAGGCACGACTGGG
TCGTGGAGAGCGCAGGGCGCGAGGTGCGCTACGTCATCGACTTCTACGCC
GGCAAGGGGACCCCGGAGCGGCCGGTCGCGCTCCACCTCGACGTGCGCCC
CGCGCTCGACAGCGCCGACGCCGCGCTCCATAGGGCATGTATGTTTGCCA
AGGAGGAGCTGAGGCTGGGGGTGGAGAGGGTGCCGACGCTGGGGGGGTTG
GCGGCGGCGGCGGCGCGGGATGGGGGGCAGCCCCCGGATGACAGGCCGCC
GCCTGCGCGGTGACGCAGTACAGGGCAGTACGGGGGCGGTACAGTGTACT
TTGCGATGGTGGACTGCAGGGTAGCAGCGGCAGTACATCGAGGCAGACAG
CTTCGTAGGTGATCAAACGGCAGACAGCTTCGTAGGTGATCAAACGGGGT
GCGCCGCCATCACATCTTCGTGTACATGTGAATACATCCACTGCTGGGAG
CTCT
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protein sequence of jgi.p|Trimin1|351976

>Trimin1|351976|estExt_Genemark1.C_Ctg_1040069 ID=Trimin1|351976|estExt_Genemark1.C_Ctg_1040069|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=224bp
MASTNSDESVSGGGCPVKQTVPLSTARQCSTIPKGEVTPQHQPEGANVWV
YPSEQQYFNAMKRKGWEAQEQDVPIVLAIHNAVNEQGWSKVREWEAMRGG
DPKLKEFRGRPNDISPKAWFKTNVLGYKPPFDRHDWVVESAGREVRYVID
FYAGKGTPERPVALHLDVRPALDSADAALHRACMFAKEELRLGVERVPTL
GGLAAAAARDGGQPPDDRPPPAR*
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mRNA from alignment at Contig_104:432294..433479-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10233 ID=mRNA_10233|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1186bp|location=Sequence derived from alignment at Contig_104:432294..433479- (Tribonema minus UTEX_B_3156 )
GCCCGGTGTGTACGTGTGTGTCCTGATCAGTAAAGGGAGCGATGGCGTCG ACCAACTCTGATGAGAGCGTCAGTGGCGGCGGCTGTCCAGTGAAGGTAAA TCGTAAAACAGATGCAGGCAGCAGCAGCAGTGGCGGTCAGTCAGGATGGC TGCAATCAATTACAGCCTGGTTTCCTGGGAGCAGCAGTGGCAATACCACG CGTCCACCTTCCTCCGCCATACGGCAACAGCAGCAGCATCAACAGCACGA GCCGCAACGACCTTCTGCCGGCGGCGACGACTGTGGTTGCCCTGTCAAAG GCCAAGCAGCTGATGCTGCTGGTGCTTATAACCCTCTAGTGGGCGATTAC AAGTACGGTCAGGCCCCGCATCCGCAGCAGACGGTTCCGCTCAGCACCGC CCGGCAGTGCAGCACGATACCCAAAGGCGAGGTGACCCCGCAGCACCAGC CGGAGGGAGCCAACGTGTGGGTGTACCCCTCGGAGCAGCAGTACTTCAAC GCCATGAAGCGCAAGGGGTGGGAGGCGCAGGAGCAGGACGTCCCCATCGT TCTGGCGATCCACAACGCCGTCAACGAGCAGGGCTGGAGCAAGGTGAGAG AGTGGGAGGCCATGCGCGGCGGCGACCCGAAACTCAAAGAGTTCCGGGGG CGCCCCAACGACATCAGCCCCAAGGCCTGGTTCAAGACCAATGTCCTGGG CTACAAGCCGCCCTTCGACAGGCACGACTGGGTCGTGGAGAGCGCAGGGC GCGAGGTGCGCTACGTCATCGACTTCTACGCCGGCAAGGGGACCCCGGAG CGGCCGGTCGCGCTCCACCTCGACGTGCGCCCCGCGCTCGACAGCGCCGA CGCCGCGCTCCATAGGGCATGTATGTTTGCCAAGGAGGAGCTGAGGCTGG GGGTGGAGAGGGTGCCGACGCTGGGGGGGTTGGCGGCGGCGGCGGCGCGG GATGGGGGGCAGCCCCCGGATGACAGGCCGCCGCCTGCGCGGTGACGCAG TACAGGGCAGTACGGGGGCGGTACAGTGTACTTTGCGATGGTGGACTGCA GGGTAGCAGCGGCAGTACATCGAGGCAGACAGCTTCGTAGGTGATCAAAC GGCAGACAGCTTCGTAGGTGATCAAACGGGGTGCGCCGCCATCACATCTT CGTGTACATGTGAATACATCCACTGCTGGGAGCTCT
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Coding sequence (CDS) from alignment at Contig_104:432294..433479-

>mRNA_10233 ID=mRNA_10233|Name=jgi.p|Trimin1|351976|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=672bp|location=Sequence derived from alignment at Contig_104:432294..433479- (Tribonema minus UTEX_B_3156 )
ATGGCGTCGACCAACTCTGATGAGAGCGTCAGTGGCGGCGGCTGTCCAGT
GAAGCAGACGGTTCCGCTCAGCACCGCCCGGCAGTGCAGCACGATACCCA
AAGGCGAGGTGACCCCGCAGCACCAGCCGGAGGGAGCCAACGTGTGGGTG
TACCCCTCGGAGCAGCAGTACTTCAACGCCATGAAGCGCAAGGGGTGGGA
GGCGCAGGAGCAGGACGTCCCCATCGTTCTGGCGATCCACAACGCCGTCA
ACGAGCAGGGCTGGAGCAAGGTGAGAGAGTGGGAGGCCATGCGCGGCGGC
GACCCGAAACTCAAAGAGTTCCGGGGGCGCCCCAACGACATCAGCCCCAA
GGCCTGGTTCAAGACCAATGTCCTGGGCTACAAGCCGCCCTTCGACAGGC
ACGACTGGGTCGTGGAGAGCGCAGGGCGCGAGGTGCGCTACGTCATCGAC
TTCTACGCCGGCAAGGGGACCCCGGAGCGGCCGGTCGCGCTCCACCTCGA
CGTGCGCCCCGCGCTCGACAGCGCCGACGCCGCGCTCCATAGGGCATGTA
TGTTTGCCAAGGAGGAGCTGAGGCTGGGGGTGGAGAGGGTGCCGACGCTG
GGGGGGTTGGCGGCGGCGGCGGCGCGGGATGGGGGGCAGCCCCCGGATGA
CAGGCCGCCGCCTGCGCGGTGA
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