mRNA_17870 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|137951
Unique NamemRNA_17870
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A836CG12_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG12_9STRA)

HSP 1 Score: 227 bits (579), Expect = 1.250e-75
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324
            CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF
Sbjct:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 108          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A835Z2I1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2I1_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.040e-45
Identity = 72/108 (66.67%), Postives = 81/108 (75.00%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324
            CLQRWKKVLRPGLRKG+WT  EDA+LAR VA     NW  +   +  RTS+QCRERW+HHLDP +KR  Y+  ED AI A H + GNRW QIAL VPGRTENSIKARF
Sbjct:   37 CLQRWKKVLRPGLRKGEWTAAEDARLARTVAACTPLNWSAVCKSLTGRTSRQCRERWKHHLDPDLKRTEYTPDEDAAILASHHQHGNRWRQIALSVPGRTENSIKARF 144          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A835YSN1_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSN1_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.110e-43
Identity = 67/108 (62.04%), Postives = 80/108 (74.07%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324
            CLQRWKKVLRPGL KG WT EED  L  LV +G   NWG +A+ + +RT KQCRERWQHHL+P ++RG YS  ED AI AG+ R GNRW+ I  DVPGRT  SI++R+
Sbjct:   15 CLQRWKKVLRPGLAKGPWTAEEDETLMNLVRQGDISNWGDVAAVITTRTCKQCRERWQHHLNPDLRRGDYSPEEDAAILAGYERHGNRWATIIQDVPGRTAPSIRSRY 122          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: D8LM16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM16_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.320e-43
Identity = 74/107 (69.16%), Postives = 81/107 (75.70%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKAR 321
            CLQRWKKVLRPGL KGQW  EEDA L +L A   FKNWGVL+  M+ RTSKQCRERW HHLDP+I +GAY+  ED  I    A LGNRWSQIA  +PGRTENSIK R
Sbjct:  144 CLQRWKKVLRPGLVKGQWDAEEDAALMKL-ATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDNIIIETQAELGNRWSQIAARLPGRTENSIKIR 249          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A7S2UU49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UU49_9STRA)

HSP 1 Score: 149 bits (376), Expect = 9.970e-42
Identity = 68/108 (62.96%), Postives = 83/108 (76.85%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324
            CLQRWKKVL+PGL KGQW+  EDAKL  LV +G FKNWG LA+ M  RTSKQCRERW HHLDP++K+G Y+  ED  I    + LGN+WS+IA  +PGRTEN++K R+
Sbjct:   65 CLQRWKKVLKPGLVKGQWSALEDAKLVDLVGKG-FKNWGQLAAQMPGRTSKQCRERWSHHLDPSVKKGEYTTEEDNTILRLQSELGNKWSEIAKHLPGRTENAVKIRW 171          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A6H5KJU6_9PHAE (MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJU6_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 5.070e-41
Identity = 74/107 (69.16%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKAR 321
            CLQRWKKVLRPGL KGQW  EEDA L +L A   FKNWGVL+  M+ RTSKQCRERW HHLDP+I +GAY+  ED+ I    A+LGNRWSQIA  +PGRTENSIK R
Sbjct:  151 CLQRWKKVLRPGLVKGQWDAEEDAALMKL-ATAPFKNWGVLSQSMSGRTSKQCRERWCHHLDPSINKGAYTEEEDKIIIETQAKLGNRWSQIAARLPGRTENSIKIR 256          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: H3G911_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G911_PHYRM)

HSP 1 Score: 134 bits (338), Expect = 4.230e-38
Identity = 66/108 (61.11%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324
            CLQRW KVL PGL KG W  +ED  L  LVA G  KNWG +A+ +  RTSKQCRERW +HLDP+I RG YSA ED  I    ARLGNRWS IA  +PGRTE+++K R+
Sbjct:   47 CLQRWTKVLAPGLVKGHWRPDEDDLLKELVAEGR-KNWGQVATRIPGRTSKQCRERWYNHLDPSIVRGEYSAEEDRMILDAQARLGNRWSAIAAMLPGRTEDAVKIRW 153          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A835Z3R6_9STRA (Homeodomain-like protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3R6_9STRA)

HSP 1 Score: 134 bits (336), Expect = 5.800e-38
Identity = 63/109 (57.80%), Postives = 77/109 (70.64%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALD-VPGRTENSIKARF 324
            CLQRWKKVLRP L+KG WT EEDA L   V  G  KNWG +A H+ +RT +QC+ RWQHHLDP IKRG+++AAED  I  G  R GNRW  IA   +PGR + +I+ R+
Sbjct:   47 CLQRWKKVLRPDLKKGDWTPEEDALLTDTVQSGTCKNWGKVALHLPNRTYRQCQLRWQHHLDPDIKRGSFTAAEDALILEGFKRFGNRWKHIARKHLPGRIDYTIRGRY 155          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A662WMC1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMC1_9STRA)

HSP 1 Score: 135 bits (340), Expect = 8.220e-38
Identity = 67/108 (62.04%), Postives = 77/108 (71.30%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324
            CLQRW KVL PGL KG W+  ED  L RLVA    KNWG +A+ +  RTSKQCRERW +HLDPAI RGAYS  ED  I    ARLGNRWS IA  +PGRTE+++K R+
Sbjct:   43 CLQRWTKVLAPGLVKGHWSPHEDELLRRLVA-ADQKNWGDVAAKIPGRTSKQCRERWHNHLDPAIVRGAYSPEEDRLILEAQARLGNRWSVIAAMLPGRTEDAVKIRW 149          
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Match: A0A6T7CFM7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A6T7CFM7_9STRA)

HSP 1 Score: 131 bits (330), Expect = 4.070e-37
Identity = 64/110 (58.18%), Postives = 75/110 (68.18%), Query Frame = 1
Query:    1 CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKN--WGVLASHMASRTSKQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRTENSIKARF 324
            CL RW KVLRPGLRKG WT EED  +  LVA+ G     W  +A+ +  R  KQCRERW +HLDP IKR A+S  ED A+   H +LGNRWSQIA  +PGRTEN +K RF
Sbjct:    1 CLHRWSKVLRPGLRKGPWTEEEDNIVRSLVAQHGVGKIKWSQVAAQLPGRLGKQCRERWLNHLDPGIKRDAWSHHEDLALHEAHRQLGNRWSQIAGRLPGRTENGVKNRF 110          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|137951 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG12_9STRA1.250e-75100.00Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835Z2I1_9STRA1.040e-4566.67Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A835YSN1_9STRA4.110e-4362.04Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
D8LM16_ECTSI5.320e-4369.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2UU49_9STRA9.970e-4262.96Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A6H5KJU6_9PHAE5.070e-4169.16MYB protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
H3G911_PHYRM4.230e-3861.11Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A835Z3R6_9STRA5.800e-3857.80Homeodomain-like protein (Fragment) n=2 Tax=Tribon... [more]
A0A662WMC1_9STRA8.220e-3862.04Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A6T7CFM7_9STRA4.070e-3758.18Hypothetical protein n=1 Tax=Florenciella parvula ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_246contigContig_246:73791..74628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|137951|gw1.246.5.1
BRITEko00000,ko00001,ko03000
KEGG Pathwayko04151,ko05166,map04151,map05166
KEGG koko:K09420,ko:K09422
Preferred nameMYBL2
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
Evalue8.72e-44
Seed ortholog2880.D8LM16
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-22_002960.1
TranscriptId138273
TrackFilteredModels1
ProteinId137951
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137951gene_17870Tribonema minus UTEX_B_3156 geneContig_246 73791..74628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|137951Trimin1|137951|gw1.246.5.1Tribonema minus UTEX_B_3156 polypeptideContig_246 73791..74628 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17870_2exon_17870_2Tribonema minus UTEX_B_3156 exonContig_246 73791..73924 -
exon_17870_1exon_17870_1Tribonema minus UTEX_B_3156 exonContig_246 74439..74628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17870CDS_17870Tribonema minus UTEX_B_3156 CDSContig_246 74439..74628 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17870 ID=mRNA_17870|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=324bp|location=Sequence derived from alignment at Contig_246:73791..74628- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCCTGCAGCGCTGGAAGAAGGTGCTGCGCCCGGGCCTGCGCAAGGGGCA
GTGGACGCGCGAGGAGGACGCCAAGCTCGCGCGCCTCGTCGCGCGCGGCG
GCTTCAAGAACTGGGGCGTCCTCGCGTCGCACATGGCCAGCAGGACGTCC
AAGCAGTGCCGCGAGCGCTGGCAGCACCACCTCGACCCTGCGATCAAGCG
CGGCGCGTACAGCGCCGCGGAGGACGAAGCGATCCGCGCGGGCCACGCGC
GCCTCGGCAACCGCTGGTCCCAGATCGCGCTCGACGTGCCCGGCCGCACC
GAGAACTCCATCAAGGCGCGCTTC
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protein sequence of jgi.p|Trimin1|137951

>Trimin1|137951|gw1.246.5.1 ID=Trimin1|137951|gw1.246.5.1|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=108bp
CLQRWKKVLRPGLRKGQWTREEDAKLARLVARGGFKNWGVLASHMASRTS
KQCRERWQHHLDPAIKRGAYSAAEDEAIRAGHARLGNRWSQIALDVPGRT
ENSIKARF
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mRNA from alignment at Contig_246:73791..74628-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17870 ID=mRNA_17870|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=838bp|location=Sequence derived from alignment at Contig_246:73791..74628- (Tribonema minus UTEX_B_3156 )
TGCCTGCAGCGCTGGAAGAAGGTGCTGCGCCCGGGCCTGCGCAAGGGGCA GTGGACGCGCGAGGAGGACGCCAAGCTCGCGCGCCTCGTCGCGCGCGGCG GCTTCAAGAACTGGGGCGTCCTCGCGTCGCACATGGCCAGCAGGACGTCC AAGCAGTGCCGCGAGCGCTGGCAGCACCACCTCGACCCTGGTGAGAGCGC GCGCCGCCGCGGCTGCGGTCGCTTGCCGCGTTAGCGTGTACGATAGCACG AGCGACGCCCCTTCCCCTCGCGCGTGCAGTCCCTGCCGAGCACTCCTTCA CATTGCCTCTGGAGGCCCGTTGCTGCCTGTCACAGCGGATTGCGCATGCT GCTTGAGTGGCCGTTGCATCATGTGAACCCCGCACGTTGCTGATGTTCCC CACCTGTGCCCCACCTGCCCCCCTCCGCTCCGTCGCTGCGCCGCCCTCTG TAACTGTCGCCGGTTGCGGCTGCGCAGCGCCTTCAGACATCGTCACCAAA CACGCAACCCAGCGCACGCCTTACCCACACATCCTGCCGCTCGCACGCTG CCTCCTTGTGCGCTGACCCTGCTCGACGTTGCAATGCGCCCCCCTCCCCC CCCTTCCCCATCCTTCCGCTGCGATCATTCCGCAGCGATCAAGCTGACCC TGCTCGACACTGCAACCCTCCCCCCCCCCCCCCCCCTTTTCCTTGCTCCT GCAGCGATCAAGCGCGGCGCGTACAGCGCCGCGGAGGACGAAGCGATCCG CGCGGGCCACGCGCGCCTCGGCAACCGCTGGTCCCAGATCGCGCTCGACG TGCCCGGCCGCACCGAGAACTCCATCAAGGCGCGCTTC
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Coding sequence (CDS) from alignment at Contig_246:73791..74628-

>mRNA_17870 ID=mRNA_17870|Name=jgi.p|Trimin1|137951|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=324bp|location=Sequence derived from alignment at Contig_246:73791..74628- (Tribonema minus UTEX_B_3156 )
TGCCTGCAGCGCTGGAAGAAGGTGCTGCGCCCGGGCCTGCGCAAGGGGCA
GTGGACGCGCGAGGAGGACGCCAAGCTCGCGCGCCTCGTCGCGCGCGGCG
GCTTCAAGAACTGGGGCGTCCTCGCGTCGCACATGGCCAGCAGGACGTCC
AAGCAGTGCCGCGAGCGCTGGCAGCACCACCTCGACCCTGCGATCAAGCG
CGGCGCGTACAGCGCCGCGGAGGACGAAGCGATCCGCGCGGGCCACGCGC
GCCTCGGCAACCGCTGGTCCCAGATCGCGCTCGACGTGCCCGGCCGCACC
GAGAACTCCATCAAGGCGCGCTTC
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