Trimin1|351967|estExt_Genemark1.C_Ctg_1040055 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351967
Unique NameTrimin1|351967|estExt_Genemark1.C_Ctg_1040055
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length340
Homology
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A835ZDD2_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDD2_9STRA)

HSP 1 Score: 504 bits (1297), Expect = 1.790e-177
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 0
Query:    1 MLFLGLAALLAXXXXXXXXXXXXXXXXXXXXXXARHLQSPSAAELQPEHYQPGGGHGDDSDDSPAQEHKEHSLLKNVLLGSLYSILAFAVLVCVSRKLAQARQNYAAAAERRRSGEHALTKAAIDSLPLEPFKAAKCPPPRGGTPDRGQGGGVCXXXXXXXXXXXXXXXXXXSTAEGEIKAVKSSPAALEEARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPAEPWTCRRALRIAAQPLRECFYEVAQTHTVQDLRGALRGWLQARRQRATGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEASPV 339
            MLFLGLAALLAXXXXXXXXXXXXXXXXXXXXXXARHLQSPSAAELQPEHYQPGGGHGDDSDDSPAQEHKEHSLLKNVLLGSLYSILAFAVLVCVSRKLAQARQNYAAAAERRRSGEHALTKAAIDSLPLEPFKAAKCPPPRGGTPDRGQGGGVCXXXXXXXXXXXXXXXXXXSTAEGEIKAVKSSPAALEEARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPAEPWTCRRALRIAAQPLRECFYEVAQTHTVQDLRGALRGWLQARRQRATGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEASPV
Sbjct:    1 MLFLGLAALLAXXXXXXXXXXXXXXXXXXXXXXARHLQSPSAAELQPEHYQPGGGHGDDSDDSPAQEHKEHSLLKNVLLGSLYSILAFAVLVCVSRKLAQARQNYAAAAERRRSGEHALTKAAIDSLPLEPFKAAKCPPPRGGTPDRGQGGGVCXXXXXXXXXXXXXXXXXXSTAEGEIKAVKSSPAALEEARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPAEPWTCRRALRIAAQPLRECFYEVAQTHTVQDLRGALRGWLQARRQRATGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPEASPV 339          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A835ZK41_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK41_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 8.170e-16
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = 0
Query:  189 LEEARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVH 247
            +E  R+  GD +CA+CL  FE G+ LRVVPHC H+YH+ACLD WL TK +CPLCKQ V 
Sbjct:  239 VEGGREGVGDLMCAICLADFEGGDQLRVVPHCFHQYHKACLDPWLETKAICPLCKQRVR 297          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A836C7Z7_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7Z7_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 9.540e-15
Identity = 32/47 (68.09%), Postives = 40/47 (85.11%), Query Frame = 0
Query:  201 CAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVH 247
            CA+CL  FE+G++LRVVP CNH YH+ACLD WL ++G+CPLCKQ VH
Sbjct:  121 CAICLNEFETGDVLRVVPRCNHHYHKACLDPWLESRGICPLCKQLVH 167          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: J3LIR8_ORYBR (RING-type domain-containing protein n=2 Tax=Oryza brachyantha TaxID=4533 RepID=J3LIR8_ORYBR)

HSP 1 Score: 74.7 bits (182), Expect = 1.440e-12
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 0
Query:  180 KAVKSSPAALEEARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPAEPWTCRR 257
            KA+ + P     A      A CA+CL  F +GE LRV+PHC H +H AC+DTWL T   CP C+  V     P  CRR
Sbjct:   55 KAIDAIPTVSFAAGKQQQTAECAICLAEFGAGEELRVLPHCGHGFHVACIDTWLGTHATCPSCRATVATLFVPGRCRR 132          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A0D9VN43_9ORYZ (RING-type domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VN43_9ORYZ)

HSP 1 Score: 73.6 bits (179), Expect = 9.170e-12
Identity = 35/82 (42.68%), Postives = 43/82 (52.44%), Query Frame = 0
Query:  180 KAVKSSPAALEEARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPAE----PWTCRR 257
            KA+ + P     A D    A C +CL  F +GE LRV+PHC H +H AC+DTWL     CP C+  V  P      P  CRR
Sbjct:   82 KAIDALPTVSYAAGDKQQAAECIICLAEFAAGEELRVLPHCGHGFHMACIDTWLGAHATCPSCRATVGTPPPALFLPGRCRR 163          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: UPI0011D221B0 (RING-H2 finger protein ATL66 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D221B0)

HSP 1 Score: 72.0 bits (175), Expect = 1.310e-11
Identity = 30/62 (48.39%), Postives = 43/62 (69.35%), Query Frame = 0
Query:  185 SPAALEEARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPV 246
            +P+ +EEA +      C++CL  FE GE ++V+P C HRYH  C+D WLAT+ VCPLC+ P+
Sbjct:   93 APSEVEEAGE------CSICLGEFEDGEKVKVLPQCGHRYHCGCVDQWLATRSVCPLCRAPL 148          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A6P5GB10_ANACO (RING-H2 finger protein ATL2-like n=2 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5GB10_ANACO)

HSP 1 Score: 71.6 bits (174), Expect = 3.070e-11
Identity = 29/55 (52.73%), Postives = 37/55 (67.27%), Query Frame = 0
Query:  192 ARDVDGDAICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPV 246
            A  V+G   CAVCL GF+ GE+ +V+P CNHR+H  C+D WL   G CPLC+  V
Sbjct:  103 ANGVEGAVDCAVCLAGFQDGEIGQVLPRCNHRFHAECVDMWLQLGGACPLCRAAV 157          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A8J5SPN7_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5SPN7_ZIZPA)

HSP 1 Score: 72.0 bits (175), Expect = 3.110e-11
Identity = 30/60 (50.00%), Postives = 37/60 (61.67%), Query Frame = 0
Query:  201 CAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPAE---PWTCRR 257
            CA+CL  F +GE +RV+PHC H +H AC+DTWL T   CP C+  V  P     P  CRR
Sbjct:  109 CAICLAEFAAGEAVRVLPHCGHDFHVACIDTWLGTHATCPSCRSTVGTPPTLFLPGRCRR 168          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A8J5WCJ0_ZIZPA (RING-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WCJ0_ZIZPA)

HSP 1 Score: 72.8 bits (177), Expect = 3.260e-11
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0
Query:  199 AICAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPAEP 252
            ++CA+CL  F SGE +RV+P+CNH +HQ C+D WL     CP C+QP   PAEP
Sbjct:  163 SLCAICLAEFSSGEQVRVLPNCNHGFHQRCIDRWLRVHPTCPTCRQPPF-PAEP 215          
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Match: A0A162AH60_DAUCS (RING-type domain-containing protein n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=A0A162AH60_DAUCS)

HSP 1 Score: 72.0 bits (175), Expect = 3.730e-11
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 0
Query:  201 CAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEP 249
            CAVCL   E GE++R++P+C+H +H AC+DTWL+T   CP+C+  V  P
Sbjct:   93 CAVCLSNLEDGELIRILPNCDHNFHVACIDTWLSTNSTCPVCRSAVEPP 141          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351967 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDD2_9STRA1.790e-177100.00RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835ZK41_9STRA8.170e-1661.02RING-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836C7Z7_9STRA9.540e-1568.09RING-type domain-containing protein n=1 Tax=Tribon... [more]
J3LIR8_ORYBR1.440e-1244.87RING-type domain-containing protein n=2 Tax=Oryza ... [more]
A0A0D9VN43_9ORYZ9.170e-1242.68RING-type domain-containing protein n=1 Tax=Leersi... [more]
UPI0011D221B01.310e-1148.39RING-H2 finger protein ATL66 n=1 Tax=Syzygium oleo... [more]
A0A6P5GB10_ANACO3.070e-1152.73RING-H2 finger protein ATL2-like n=2 Tax=Ananas co... [more]
A0A8J5SPN7_ZIZPA3.110e-1150.00RING-type domain-containing protein n=1 Tax=Zizani... [more]
A0A8J5WCJ0_ZIZPA3.260e-1153.70RING-type domain-containing protein n=1 Tax=Zizani... [more]
A0A162AH60_DAUCS3.730e-1151.02RING-type domain-containing protein n=1 Tax=Daucus... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 201..242
e-value: 3.1E-5
score: 33.4
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 201..243
e-value: 8.9E-11
score: 42.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 201..243
score: 11.338544
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 164..249
e-value: 1.4E-17
score: 65.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..69
NoneNo IPR availablePANTHERPTHR45798RING-H2 FINGER PROTEIN ATL61-RELATED-RELATEDcoord: 50..252
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 183..250

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:339600..343172 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351967mRNA_10217Tribonema minus UTEX_B_3156 mRNAContig_104 339600..343172 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351967|estExt_Genemark1.C_Ctg_1040055 ID=Trimin1|351967|estExt_Genemark1.C_Ctg_1040055|Name=jgi.p|Trimin1|351967|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=340bp
MLFLGLAALLAACVAHTVTASVTASINAAAAAAARHLQSPSAAELQPEHY
QPGGGHGDDSDDSPAQEHKEHSLLKNVLLGSLYSILAFAVLVCVSRKLAQ
ARQNYAAAAERRRSGEHALTKAAIDSLPLEPFKAAKCPPPRGGTPDRGQG
GGVCCGGAARCAGATPAAAAAASTAEGEIKAVKSSPAALEEARDVDGDAI
CAVCLCGFESGEMLRVVPHCNHRYHQACLDTWLATKGVCPLCKQPVHEPA
EPWTCRRALRIAAQPLRECFYEVAQTHTVQDLRGALRGWLQARRQRATGH
HQAAPAAALAAAAAAAAAAAAAGAQQQPAAAAAPEASPV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD