mRNA_18132 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835Z1F3_9STRA (Plastocyanin-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1F3_9STRA) HSP 1 Score: 208 bits (529), Expect = 2.210e-68 Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1
Query: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 288
LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS
Sbjct: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 96
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835Z7H4_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7H4_9STRA) HSP 1 Score: 204 bits (520), Expect = 1.760e-60 Identity = 94/96 (97.92%), Postives = 95/96 (98.96%), Query Frame = 1
Query: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 288
LTLGSTVQWDVSFSFLHPLHTHVNHMQLGP+TAANQWS LPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS
Sbjct: 383 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPITAANQWSSLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISGS 478
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A836CK08_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK08_9STRA) HSP 1 Score: 115 bits (288), Expect = 6.740e-28 Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
L +G W VS +HPLH HVN MQ G TA NQW +PGW+ GDW+DTL+APG VYI+PER+ G MV+HCH+A H+D +G+ A I+G
Sbjct: 909 LPIGVAQPWSVSGDDIHPLHVHVNKMQWGADTAGNQWDQVPGWNAPGDWVDTLSAPGISVVYIKPERFLGPMVMHCHIAEHSD-MGLLAVAKITG 1002
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835ZAX7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAX7_9STRA) HSP 1 Score: 111 bits (278), Expect = 1.490e-26 Identity = 52/95 (54.74%), Postives = 63/95 (66.32%), Query Frame = 1
Query: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
+T+ QW V + HPLH HVNHMQLG +T ANQW PGWHV GD+IDTL+A VPV + PER+ G M +HCHV HAD LG+ + I G
Sbjct: 633 MTVNKPQQWLVIGTDQHPLHIHVNHMQLGDITKANQWDEAPGWHVTGDFIDTLSAKAQVPVRVNPERFIGPMFLHCHVPSHAD-LGVLGVIDIRG 726
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835ZCB5_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCB5_9STRA) HSP 1 Score: 111 bits (277), Expect = 2.050e-26 Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 25 WDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAM 273
W ++ S HPLH HV+HMQLG V NQW P W++ GDW+D+++APG VPVY+RPERY G V+HCH+A H+D +G+ A M
Sbjct: 789 WQITGSDKHPLHIHVDHMQLGAVGVTNQWPGAPNWNMPGDWVDSISAPGAVPVYMRPERYGGHRVMHCHIAEHSD-MGIMAVM 870
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835YQ52_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ52_9STRA) HSP 1 Score: 110 bits (274), Expect = 5.200e-26 Identity = 49/91 (53.85%), Postives = 63/91 (69.23%), Query Frame = 1
Query: 7 LGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAI 279
L +W V+ SF HP+H HVNHM++ VT N +P W+V GDWIDTLA P V VY+R ER+TGKM++HCH+A H+D LG+T M I
Sbjct: 683 LDKPQRWTVAGSFQHPVHVHVNHMEIAAVTPDNDIDGIPEWNVVGDWIDTLAVPNGVDVYVRAERFTGKMMIHCHIAQHSD-LGVTKVMNI 772
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835ZH56_9STRA (CBM6 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZH56_9STRA) HSP 1 Score: 109 bits (272), Expect = 9.670e-26 Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 7 LGSTVQWDVSFSFLHPLHTHVNHMQLGP-VTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADS 252
LG QW + S LHP H HVNHMQLGP + AN W +PGW GD+IDT++A G +PV++RPER+ G MV+HCH+A H+D+
Sbjct: 653 LGFAQQWTIQGSDLHPFHIHVNHMQLGPTIGPANNWPDVPGWFQPGDYIDTISALGNLPVFMRPERFVGPMVMHCHIAQHSDN 735
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835YXW7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXW7_9STRA) HSP 1 Score: 107 bits (267), Expect = 4.490e-25 Identity = 49/95 (51.58%), Postives = 65/95 (68.42%), Query Frame = 1
Query: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
L L QW V+ + LHPLH HVNH Q+G VTAANQW+ P W GD++D+L+A G+V + +RPER++G M++HCH+ HAD GM A I G
Sbjct: 313 LELAVPEQWLVTGTDLHPLHVHVNHFQIGKVTAANQWAEAPEWLQEGDYMDSLSAKGSVQLLVRPERFSGVMIIHCHITSHADQ-GMMAVFNIKG 406
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835YVH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVH6_9STRA) HSP 1 Score: 101 bits (251), Expect = 6.710e-23 Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1
Query: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGP-VTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
LTLG W VS + +HPLH HVNHMQ+G VT NQW +P W AGDW+D L+ VY+RP ++G MV+HCH+A H+D LG+ I+G
Sbjct: 942 LTLGRVQPWSVSGADVHPLHIHVNHMQIGAEVTDDNQWLEVPNWSRAGDWVDVLSQRNGAIVYVRPVTFSGPMVMHCHIAEHSD-LGVIGVAKING 1036
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Match: A0A835Z8B6_9STRA (Plastocyanin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B6_9STRA) HSP 1 Score: 100 bits (248), Expect = 1.400e-22 Identity = 47/95 (49.47%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 1 LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIDTLAAPGTVPVYIRPERYTGKMVVHCHVAYHADSLGMTAAMAISG 285
LTLG QW V+ + HPLH H+ G V+A NQW P W V GDW+D+L+A G VP+ + PER++G MV+HCH+ HAD GM A I G
Sbjct: 398 LTLGVPEQWLVTGTDQHPLHVHI-----GGVSAENQWDDAPDWLVVGDWMDSLSARGRVPILVHPERFSGPMVIHCHITSHADQ-GMMAVFTIKG 486 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|154303 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18132 ID=mRNA_18132|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_244:68741..69028+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTCACACTGGGGTCAACGGTGCAGTGGGACGTGTCCTTTTCCTTCCTGCAback to top protein sequence of jgi.p|Trimin1|154303 >Trimin1|154303|gw1.244.16.1 ID=Trimin1|154303|gw1.244.16.1|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=96bp LTLGSTVQWDVSFSFLHPLHTHVNHMQLGPVTAANQWSFLPGWHVAGDWIback to top mRNA from alignment at Contig_244:68741..69028+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18132 ID=mRNA_18132|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=288bp|location=Sequence derived from alignment at Contig_244:68741..69028+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_244:68741..69028+ >mRNA_18132 ID=mRNA_18132|Name=jgi.p|Trimin1|154303|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=288bp|location=Sequence derived from alignment at Contig_244:68741..69028+ (Tribonema minus UTEX_B_3156 )back to top |