mRNA_17976 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: A0A835Z007_9STRA (Rho-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z007_9STRA) HSP 1 Score: 1768 bits (4579), Expect = 0.000e+0 Identity = 1275/1275 (100.00%), Postives = 1275/1275 (100.00%), Query Frame = 1
Query: 1 MSQHHAAHMSWFDASPGEEASQEQNYLMDALFETAFVDATVASANSTSSFIRPARSSVSSSSRRDSNPPANTNGSSLPRSLQQRSSSSRSRDGSSLSLPPHPLSCHSPDSAAAASETNSVPLMSPLTSNSYSNSNNRPVSRTPSVHDVTSAAARAAKAAAVAQSNAELAAAVAAADTLWAGGHHLTKSTSEPADLGAGPALSQEHGQDEGAGTGRGQDSADYRLLLEEARRLDLRDIADSGALQIAGRDLEGRVVILCTPAECVPQGASSQERSXXXXXXXXXXXXXXXAAAHRFSMAFKQGGFPAMQEQMGGAAIGIGGQGGGSVLSELATNLGESTELARLLLYFVALLDGVVGGRYVLVFCNTGFDWLSWSRYSFLGQLHGALPRRYRKNLQRLIIVHPSQVLKMFFMFGRLFLSPKVYNKVHFCEHVADLLELLPREAVALLPETVFLHDTPGLTRLSSLHPSSSGAQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARKDACLSGKTYAYIAHSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTEGVGMSSHXXXXXXXXXXXXXXXXRQSFGDRPRDLANAHASIWGDGXXXXXXXXXTTDVSALLQLPPRCSSVKRSSTGGASSRVTFSDAQSTLPEGRAAGGRRSMEGRGVLEAAMSAEERMARTERARTSFGGXXXXXXXXXGAPERPQGRRSVEGRXXXXXXXXXXXXXTAEDGPSKTEHARVTFSDFAXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSWPDQPPPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSAQHHRMGASVPRNISARIGVRAMESIRLAQAQALLQXXXXXXXXXXXXXXXXXXRSTMLRQQVSAAEMTAALRAHRRSLGVDARSSDARPKTAKSSASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRHSRYSVLSPGARARMSTRAFAKGFGLHRKSHAGSTAAAAAAKAAVLRRGPPDPRGPVMGVDIMAAVGQGEVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTDDDM 3825
MSQHHAAHMSWFDASPGEEASQEQNYLMDALFETAFVDATVASANSTSSFIRPARSSVSSSSRRDSNPPANTNGSSLPRSLQQRSSSSRSRDGSSLSLPPHPLSCHSPDSAAAASETNSVPLMSPLTSNSYSNSNNRPVSRTPSVHDVTSAAARAAKAAAVAQSNAELAAAVAAADTLWAGGHHLTKSTSEPADLGAGPALSQEHGQDEGAGTGRGQDSADYRLLLEEARRLDLRDIADSGALQIAGRDLEGRVVILCTPAECVPQGASSQERSXXXXXXXXXXXXXXXAAAHRFSMAFKQGGFPAMQEQMGGAAIGIGGQGGGSVLSELATNLGESTELARLLLYFVALLDGVVGGRYVLVFCNTGFDWLSWSRYSFLGQLHGALPRRYRKNLQRLIIVHPSQVLKMFFMFGRLFLSPKVYNKVHFCEHVADLLELLPREAVALLPETVFLHDTPGLTRLSSLHPSSSGAQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARKDACLSGKTYAYIAHSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTEGVGMSSHXXXXXXXXXXXXXXXXRQSFGDRPRDLANAHASIWGDGXXXXXXXXXTTDVSALLQLPPRCSSVKRSSTGGASSRVTFSDAQSTLPEGRAAGGRRSMEGRGVLEAAMSAEERMARTERARTSFGGXXXXXXXXXGAPERPQGRRSVEGRXXXXXXXXXXXXXTAEDGPSKTEHARVTFSDFAXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSWPDQPPPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSAQHHRMGASVPRNISARIGVRAMESIRLAQAQALLQXXXXXXXXXXXXXXXXXXRSTMLRQQVSAAEMTAALRAHRRSLGVDARSSDARPKTAKSSASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRHSRYSVLSPGARARMSTRAFAKGFGLHRKSHAGSTAAAAAAKAAVLRRGPPDPRGPVMGVDIMAAVGQGEVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTDDDM
Sbjct: 1 MSQHHAAHMSWFDASPGEEASQEQNYLMDALFETAFVDATVASANSTSSFIRPARSSVSSSSRRDSNPPANTNGSSLPRSLQQRSSSSRSRDGSSLSLPPHPLSCHSPDSAAAASETNSVPLMSPLTSNSYSNSNNRPVSRTPSVHDVTSAAARAAKAAAVAQSNAELAAAVAAADTLWAGGHHLTKSTSEPADLGAGPALSQEHGQDEGAGTGRGQDSADYRLLLEEARRLDLRDIADSGALQIAGRDLEGRVVILCTPAECVPQGASSQERSXXXXXXXXXXXXXXXAAAHRFSMAFKQGGFPAMQEQMGGAAIGIGGQGGGSVLSELATNLGESTELARLLLYFVALLDGVVGGRYVLVFCNTGFDWLSWSRYSFLGQLHGALPRRYRKNLQRLIIVHPSQVLKMFFMFGRLFLSPKVYNKVHFCEHVADLLELLPREAVALLPETVFLHDTPGLTRLSSLHPSSSGAQPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHARKDACLSGKTYAYIAHSSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWTEGVGMSSHXXXXXXXXXXXXXXXXRQSFGDRPRDLANAHASIWGDGXXXXXXXXXTTDVSALLQLPPRCSSVKRSSTGGASSRVTFSDAQSTLPEGRAAGGRRSMEGRGVLEAAMSAEERMARTERARTSFGGXXXXXXXXXGAPERPQGRRSVEGRXXXXXXXXXXXXXTAEDGPSKTEHARVTFSDFAXXXXXXXXXXXXXXXXXXXXXXXXXXXSRSWPDQPPPPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSPSAQHHRMGASVPRNISARIGVRAMESIRLAQAQALLQXXXXXXXXXXXXXXXXXXRSTMLRQQVSAAEMTAALRAHRRSLGVDARSSDARPKTAKSSASVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRHSRYSVLSPGARARMSTRAFAKGFGLHRKSHAGSTAAAAAAKAAVLRRGPPDPRGPVMGVDIMAAVGQGEVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTDDDM 1275
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: D7FL35_ECTSI (Similar to Rho GTPase activating protein 24 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL35_ECTSI) HSP 1 Score: 204 bits (519), Expect = 1.770e-49 Identity = 110/216 (50.93%), Postives = 146/216 (67.59%), Query Frame = 1
Query: 3190 VMGVDIMAAVGQGE-VPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEP------PAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTD 3816
V GV ++ + QGE VPWVV R + FL G L++VGLFR+AGDG++ LR+A++ +QV WDP +P G A L D +VAQLLKA+FRELPEP++P++ Y +VIAIA+AAG +WV AMK+ILW +P A Y LR LF FLR VA S+ N MT+ NLAIVWAPNL+RP D +PF LRDL+F +T W+++ + +F D
Sbjct: 1108 VFGVPLIGLMQQGEQVPWVVKRFVDFLSKFG-LESVGLFRLAGDGMDCADLRDALDNGKQVCWDPIDPIDEAEGSTGATDCASSSLMDVNMVAQLLKAFFRELPEPLVPFSAYSKVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLREVAMHSSTNRMTSENLAIVWAPNLLRPQDDDPFAVLRDLRFQIETVRWMVDCCDQLFDD 1322
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: A0A6H5JEV0_9PHAE (Rho-GAP domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEV0_9PHAE) HSP 1 Score: 194 bits (494), Expect = 1.580e-46 Identity = 107/214 (50.00%), Postives = 145/214 (67.76%), Query Frame = 1
Query: 3190 VMGVDIMAAVGQGE-VPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDD------ISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVF 3810
V GV ++ + QGE VPWVV R + FL G L++VGLFR+AGDG++ LR+A++ +QV WDP +P + + A L D +VAQLLKA+FRELPEP++P++ +VIAIA+AAG +WV AMK+ILW +P A Y LR LF FLR VA S+ N MT+ NLAIVWAPNL+RP D +PF LRDL+F +T W+++ + +F
Sbjct: 1057 VFGVPLIGLMQQGEQVPWVVKRFVDFLSKFG-LESVGLFRLAGDGMDCADLRDALDNGKQVCWDPMDPIDETEESTKATVCASSSLMDVNMVAQLLKAFFRELPEPLVPFS---KVIAIAKAAGVADARWVQAMKSILWGIPIANYNCLRFLFEFLRKVAMHSSTNRMTSENLAIVWAPNLLRPQDDHPFAVLRDLRFQIETVRWMVDCCDQLF 1266
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: A0A7R9UHX6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHX6_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.160e-19 Identity = 69/184 (37.50%), Postives = 97/184 (52.72%), Query Frame = 1
Query: 3274 RGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTV---KWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTD 3816
R R D VGL + G V + + + D P L L D VA+LLKA+ RELPEP+IP+ Y +++ R G +WV ++TI++ + S Y LR LF+FL A + A NLMTA NLAIV+APN++R D + + LRD+ G T +IE ++VF D
Sbjct: 98 RRRSDEVGLSSMRGTMVSISSGEFRPSDMAPAPGSSDVPDEIRKADRFL-LTDVYCVARLLKAFLRELPEPLIPFNKYVPLLSATRKYGRDDEGLPQWVHVVRTIVYTMNSTHYEVLRYLFMFLVRAAKEEA-NLMTAENLAIVFAPNILRSRDDSLYAELRDMGLGLTTVLLMIENASEVFKD 279
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: UPI000644F09A (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644F09A) HSP 1 Score: 95.5 bits (236), Expect = 1.180e-16 Identity = 64/212 (30.19%), Postives = 110/212 (51.89%), Query Frame = 1
Query: 3187 PVMGVDIMAAVGQ----GEVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVF 3810
P+ GV + V + ++P + + +L R L G+FR++G ++++++ + +G+DI+ + D VA LLK Y RELPEP+ P+ YP I IA++ P + + ++K ++ +P A A R LF FL V + +N MTA NL+IV+APNL++ DTN + D Q +L+E ++ ++
Sbjct: 259 PIFGVPLEQVVNRPDNNSDIPVLFVKGFEYLETRA-LHVEGIFRLSGANSQIKSMKQCFD-------------SGEDIN-LNDCEDVHTVAGLLKLYLRELPEPLFPFDTYPSFIEIAKS-DMPREEKIESLKLLISLLPPANRALTRQLFHFLDKVLQNAHINKMTAVNLSIVFAPNLLKTQDTNVMAVVADAQHVILVVQYLLENISTIW 454
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: A0A1X2H322_SYNRA (Uncharacterized protein n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2H322_SYNRA) HSP 1 Score: 96.3 bits (238), Expect = 2.680e-16 Identity = 69/209 (33.01%), Postives = 114/209 (54.55%), Query Frame = 1
Query: 3190 VMGVDIM--AAVGQGEVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVF 3810
+ G D+ AA+ VP +V +C+A + ARG +D G++R +G ++ A++ + Q D GDDI+ D + +LK YFR+LP+P++ +ALY + +AR G + + A +L ++PSA Y TLR L L + +S+ NLMT NLA+V+AP L+R DT+ L D+ + ++I +V+ +F
Sbjct: 700 LFGTDLTERAAIENRSVPLIVQQCIAAVEARG-MDLEGIYRKSGGAAQMRAIQRSYE--TQAPLDL----LGDDIN------DICAITSVLKHYFRQLPDPLLTFALYDTFLDVARLEPGQSK--IQAFTHVLSQLPSANYDTLRLLLQHLNRIRLQSSENLMTTKNLAMVFAPTLMRDRDTSR--ELVDMSYKNAVLEFMINQVDALF 891
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: UPI001F5E8EB2 (rho GTPase-activating protein 45-like n=2 Tax=Schistocerca TaxID=7008 RepID=UPI001F5E8EB2) HSP 1 Score: 95.9 bits (237), Expect = 3.840e-16 Identity = 63/226 (27.88%), Postives = 121/226 (53.54%), Query Frame = 1
Query: 3187 PVMGVDIMAAVGQGE--VPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPT----VKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFV-TLRDLQFGTDTTAWLIERVNDVFTDDDM*QSSRR 3843
PV G D+ + + +P+++ +C+ + ARGR + G++RV+G +L+ L NA G D+ + + P V+A +LK Y R+LPEP++ + LYP + +A+ + V + + ++ ++P + Y TL L L L+ VAD++ VN M A NL IV+ P L+RP ++ P + +L D + +I +++F+ +++ ++ ++
Sbjct: 619 PVFGTDLNNYLSETAHLIPFIICKCIDEIDARGR-QSKGIYRVSGVKTKLDKLCNAFE-------------IGGDLVDLSDIH-PNVIADVLKIYLRQLPEPLLSFKLYPDFVRLAKEFASDEDLDRARCVQSFRELVARLPKSHYLTLAALMLHLKRVADEADVNNMPASNLGIVFGPTLLRPDESMPSMNSLVDTAQNSRAVELMIRLSDELFSSEEVWEARQK 829
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: A0A7R9AET3_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9AET3_9CRUS) HSP 1 Score: 94.7 bits (234), Expect = 8.590e-16 Identity = 72/216 (33.33%), Postives = 111/216 (51.39%), Query Frame = 1
Query: 3178 PRGPVMGV--DIMAAVGQGE-VPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTD 3816
P G +GV ++ + + E VP VV C + + +G + VGL+RV G+ + +L AVN + L D + P D++ V++ LLK++FR LPEP++ LYP IA + +++T +K +L ++P Y TLR L L L+ V+ A N M NLAIV+ PNLIRPM+ + + D+ L+ N F D
Sbjct: 304 PEGATIGVPLELCSMSPRNECVPAVVEFCTSIVELKGG-NAVGLYRVPGNSAAVASLTEAVNRGFENL-DIQQDPRWTDVN---------VISSLLKSFFRRLPEPVVTAELYPSFIAACKLEDIRE-RYIT-IKKLLRELPEVNYETLRHLSLHLQRVSGNQATNKMDPRNLAIVFGPNLIRPMEEDMVTMVNDMSQQCKIVETLVLHANWFFDD 506
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: UPI00138FCBC8 (rho GTPase-activating protein 32 isoform X1 n=2 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00138FCBC8) HSP 1 Score: 92.8 bits (229), Expect = 3.370e-15 Identity = 66/203 (32.51%), Postives = 102/203 (50.25%), Query Frame = 1
Query: 3214 AVGQGEVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVT-LRDLQFGTDTTAWLIERVNDVFTDD 3819
AV ++P V+ +C A + G +D G++R++G ++ LR L+D DEPP DD +LRD ++ LLK YFRELP P++ Y+LY + ++ + K A+ ++ ++P Y TL L L VA + M A NLAIVWAPNL++P T L ++ +LI ++F D
Sbjct: 374 AVTCRQIPLVLEKCAAVIEEHGIVD--GIYRLSGSSSIIQKLR--------FLFDGDEPPELDD---EYYLRDVHCISSLLKMYFRELPNPLLTYSLYDKFVSAIQITDEKERK--VAIHHVVQQLPPPHYRTLEYLLQHLAEVASHAGQTAMHAKNLAIVWAPNLLKPRSQEYGSTALLEINVQAIIVEYLIRNAAELFDRD 561
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Match: A0A194PS90_PAPXU (GTPase-activating protein CdGAPr n=13 Tax=Papilio TaxID=7145 RepID=A0A194PS90_PAPXU) HSP 1 Score: 92.8 bits (229), Expect = 4.280e-15 Identity = 71/197 (36.04%), Postives = 99/197 (50.25%), Query Frame = 1
Query: 3229 EVPWVVARCMAFLCARGRLDTVGLFRVAGDGVELEALRNAVNGAQQVLWDPDEPPAGDDISAMLHLRDPLVVAQLLKAYFRELPEPIIPYALYPQVIAIARAAGGPTVKWVTAMKTILWKVPSAVYATLRGLFLFLRSVADKSAVNLMTAGNLAIVWAPNLIRPMDTNPFVTLRDLQFGTDTTAWLIERVNDVFTDD 3819
+VP V+A C + RG +D G++R++G + LR A + A D PP D++ L RDP +A LLK YFRELP P+ Y LY ++ + + AM+ + K+P Y TL L LR V+ SA MTA N+AIVWAPNL+R P L+ + T +LI D+F D
Sbjct: 447 DVPQVLAECARAIERRGAVD--GIYRLSGGAALTQRLRAAFDAAG------DTPP---DLAPPLQ-RDPHALASLLKMYFRELPNPLCTYQLYESFVSAVQQPD--EAARLRAMRDTVVKLPPPHYRTLSYLMRHLRRVSLLSAATGMTARNMAIVWAPNLLR--SPAPQHALQGVAVQAVVTEFLICYAEDLFAQD 627 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354412 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_17976 ID=mRNA_17976|Name=jgi.p|Trimin1|354412|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4099bp|location=Sequence derived from alignment at Contig_243:21356..29045+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCGCAGCATCACGCTGCGCACATGTCGTGGTTTGATGCATCACCAGGback to top protein sequence of jgi.p|Trimin1|354412 >Trimin1|354412|estExt_Genemark1.C_Ctg_2430005 ID=Trimin1|354412|estExt_Genemark1.C_Ctg_2430005|Name=jgi.p|Trimin1|354412|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1276bp MSQHHAAHMSWFDASPGEEASQEQNYLMDALFETAFVDATVASANSTSSFback to top mRNA from alignment at Contig_243:21356..29045+ Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_17976 ID=mRNA_17976|Name=jgi.p|Trimin1|354412|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7690bp|location=Sequence derived from alignment at Contig_243:21356..29045+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_243:21356..29045+ >mRNA_17976 ID=mRNA_17976|Name=jgi.p|Trimin1|354412|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=3828bp|location=Sequence derived from alignment at Contig_243:21356..29045+ (Tribonema minus UTEX_B_3156 )back to top |