Trimin1|354410|estExt_Genemark1.C_Ctg_2420017 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354410
Unique NameTrimin1|354410|estExt_Genemark1.C_Ctg_2420017
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length363
Homology
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BLAST of jgi.p|Trimin1|354410 vs. uniprot
Match: A0A835Z1A2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A2_9STRA)

HSP 1 Score: 647 bits (1670), Expect = 1.630e-233
Identity = 362/362 (100.00%), Postives = 362/362 (100.00%), Query Frame = 0 
Query:    1 MSPEAINKRSLFNKPAPAAVPSEVVVTAPTQLAAPRDSIALRQHGAVGARSAARVGGSGGGVGGSAAALEAYRTGRVASDSVQRAAVRRPAGWQRRACSAEITGGVRAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPTPAPTPDAFDDSPFMESGTPSPADMVGVHPKALPAVAASPEEHSFGLQTAANGYVVHPGMFGRHRHHSCPTGFDDDEGPVSGSFDSRFAKSAPAPLQTTPMPDGLSRLALRSRDSVEDFRKLATAHGSSGGGSGRSXXXXXXXXXXXXXXXXSGLSKVFGGXXXXXXASMAPQPAPLRTAAY 362
            MSPEAINKRSLFNKPAPAAVPSEVVVTAPTQLAAPRDSIALRQHGAVGARSAARVGGSGGGVGGSAAALEAYRTGRVASDSVQRAAVRRPAGWQRRACSAEITGGVRAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPTPAPTPDAFDDSPFMESGTPSPADMVGVHPKALPAVAASPEEHSFGLQTAANGYVVHPGMFGRHRHHSCPTGFDDDEGPVSGSFDSRFAKSAPAPLQTTPMPDGLSRLALRSRDSVEDFRKLATAHGSSGGGSGRSXXXXXXXXXXXXXXXXSGLSKVFGGXXXXXXASMAPQPAPLRTAAY
Sbjct:    1 MSPEAINKRSLFNKPAPAAVPSEVVVTAPTQLAAPRDSIALRQHGAVGARSAARVGGSGGGVGGSAAALEAYRTGRVASDSVQRAAVRRPAGWQRRACSAEITGGVRAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPTPAPTPDAFDDSPFMESGTPSPADMVGVHPKALPAVAASPEEHSFGLQTAANGYVVHPGMFGRHRHHSCPTGFDDDEGPVSGSFDSRFAKSAPAPLQTTPMPDGLSRLALRSRDSVEDFRKLATAHGSSGGGSGRSXXXXXXXXXXXXXXXXSGLSKVFGGXXXXXXASMAPQPAPLRTAAY 362
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BLAST of jgi.p|Trimin1|354410 vs. uniprot
Match: A0A835YSB0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB0_9STRA)

HSP 1 Score: 101 bits (252), Expect = 2.250e-22
Identity = 49/66 (74.24%), Postives = 51/66 (77.27%), Query Frame = 0 
Query:  242 GRHRHHSCPTGFDDDEGPVSGSFDSRFAKSAPAPLQTTPMPDGLSRLALRSRDSVEDFRKLATAHG 307
            G HRHHSCPTGFDDDEGPVSGSFDSRFAKSAPAP +  P P   +       DSVEDFRKLATAHG
Sbjct:   31 GGHRHHSCPTGFDDDEGPVSGSFDSRFAKSAPAPRRRRPCPTASAASRCARADSVEDFRKLATAHG 96
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BLAST of jgi.p|Trimin1|354410 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 1.500e-19
Identity = 45/75 (60.00%), Postives = 62/75 (82.67%), Query Frame = 0 
Query:  107 RAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLIDWKTINADKISPTDNILSINLSDLDAEDDEPT 181
            R V+F+ +V++VLIPKR+E ++ +R +LWW R+DYA+FRQVLIDWK  NA +IS +DNILSINLSD+D E++  T
Sbjct:  146 RGVSFNTQVKMVLIPKREEFSELERVKLWWGREDYAQFRQVLIDWKRANAHRISHSDNILSINLSDIDEEEESAT 220
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354410 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z1A2_9STRA1.630e-233100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YSB0_9STRA2.250e-2274.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L2B2_9PHAE1.500e-1960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..201
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 248..362

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_242contigContig_242:125360..134155 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354410mRNA_18111Tribonema minus UTEX_B_3156 mRNAContig_242 125360..134155 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354410|estExt_Genemark1.C_Ctg_2420017 ID=Trimin1|354410|estExt_Genemark1.C_Ctg_2420017|Name=jgi.p|Trimin1|354410|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=363bp
MSPEAINKRSLFNKPAPAAVPSEVVVTAPTQLAAPRDSIALRQHGAVGAR
SAARVGGSGGGVGGSAAALEAYRTGRVASDSVQRAAVRRPAGWQRRACSA
EITGGVRAVAFDPRVQVVLIPKRDEINDFDRYRLWWSRDDYAKFRQVLID
WKTINADKISPTDNILSINLSDLDAEDDEPTPAPTPDAFDDSPFMESGTP
SPADMVGVHPKALPAVAASPEEHSFGLQTAANGYVVHPGMFGRHRHHSCP
TGFDDDEGPVSGSFDSRFAKSAPAPLQTTPMPDGLSRLALRSRDSVEDFR
KLATAHGSSGGGSGRSGGGGRSGGGGRSGGGGSGLSKVFGGGGAAAAASM
APQPAPLRTAAY*
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