Trimin1|354403|estExt_Genemark1.C_Ctg_2420005 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354403
Unique NameTrimin1|354403|estExt_Genemark1.C_Ctg_2420005
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length338
Homology
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BLAST of jgi.p|Trimin1|354403 vs. uniprot
Match: A0A835Z944_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z944_9STRA)

HSP 1 Score: 542 bits (1397), Expect = 9.210e-193
Identity = 337/337 (100.00%), Postives = 337/337 (100.00%), Query Frame = 0 
Query:    1 MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDAPILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAAQPGREEWRQMRGPLHGGDEEGXXXXXXXXXXXXXXXXXXXXXXXXKRVLPQRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMMEGASKSIRGLGAAPNEAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAGQGSGSLCGCNSVSGGSAGGDYREWRRQRWWQASCSGGGGGT 337
            MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDAPILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAAQPGREEWRQMRGPLHGGDEEGXXXXXXXXXXXXXXXXXXXXXXXXKRVLPQRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMMEGASKSIRGLGAAPNEAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAGQGSGSLCGCNSVSGGSAGGDYREWRRQRWWQASCSGGGGGT
Sbjct:    1 MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDAPILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAAQPGREEWRQMRGPLHGGDEEGXXXXXXXXXXXXXXXXXXXXXXXXKRVLPQRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMMEGASKSIRGLGAAPNEAAAXXXXXXXXXXXXXXXXXXXXXXXXXGAGQGSGSLCGCNSVSGGSAGGDYREWRRQRWWQASCSGGGGGT 337
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BLAST of jgi.p|Trimin1|354403 vs. uniprot
Match: A0A835YGC4_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGC4_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.470e-13
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 0 
Query:  179 KERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKHPHGAAAPT 227
            K+ YKRPRKRA+EVDRKYTC HC +GYGNASSL+LHV+LKHP  AAAP 
Sbjct:   40 KKLYKRPRKRAYEVDRKYTCPHCFKGYGNASSLNLHVKLKHPEFAAAPA 88
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BLAST of jgi.p|Trimin1|354403 vs. uniprot
Match: A0A835Z6G2_9STRA (C2H2-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6G2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.440e-13
Identity = 37/47 (78.72%), Postives = 42/47 (89.36%), Query Frame = 0 
Query:  173 ASMSPNKERYKRPRKRAHEVDRKYTCAHCHRGYGNASSLHLHVRLKH 219
            AS S  K++YKRPRKRAHEVDRK+TC HC +GYGNASSL+LHVRLKH
Sbjct:   13 ASSSRMKQQYKRPRKRAHEVDRKHTCQHCFKGYGNASSLNLHVRLKH 59
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354403 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835Z944_9STRA9.210e-193100.00C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YGC4_9STRA2.470e-1377.55C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835Z6G2_9STRA6.440e-1378.72C2H2-type domain-containing protein n=1 Tax=Tribon... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 76..96
NoneNo IPR availableCOILSCoilCoilcoord: 121..148
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 228..243
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 221..248
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 198..219
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 196..226
score: 10.179878

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_242contigContig_242:24003..27831 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354403mRNA_18100Tribonema minus UTEX_B_3156 mRNAContig_242 24003..28023 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354403|estExt_Genemark1.C_Ctg_2420005 ID=Trimin1|354403|estExt_Genemark1.C_Ctg_2420005|Name=jgi.p|Trimin1|354403|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=338bp
MCNLERLAAVVDCILERHELVHRRSGSVVEGVKQELRQVATQTQTRGQDA
PILPPQLRQHVTYNALTRTAGLAAQLVRLQNLKEAQEAEDEAKQQDRAAA
QPGREEWRQMRGPLHGGDEEGKEAARKAKQQEHEIAQQQNKERRQKRVLP
QRADSVEHEAVIETARLRIRGTASMSPNKERYKRPRKRAHEVDRKYTCAH
CHRGYGNASSLHLHVRLKHPHGAAAPTGGKGEEREEHNGGGEGWRKGMME
GASKSIRGLGAAPNEAAAAAAAAAALAAMAPVAPAVAAAAPVAGAGQGSG
SLCGCNSVSGGSAGGDYREWRRQRWWQASCSGGGGGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type