mRNA_7465 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|163187
Unique NamemRNA_7465
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A835Z1L0_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1L0_9STRA)

HSP 1 Score: 241 bits (615), Expect = 8.180e-81
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYVG 351
            VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYVG
Sbjct:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYVG 117
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A7S1ZV30_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZV30_TRICV)

HSP 1 Score: 130 bits (327), Expect = 4.360e-34
Identity = 60/116 (51.72%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            V   ++HP IV  + A Q K  +YF+L Y  GG+L +HLSK G       RF+A+E++LA+ Y+H+  I+ RDLKPEN+LLDA+GHVRLTDFGLSK  +S  + GAT+ CGT  Y+
Sbjct:   98 VLGYVNHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLSKVGKFAEPRARFYASEIVLAISYVHELDIIYRDLKPENVLLDAKGHVRLTDFGLSKEGISSSSSGATSFCGTPEYL 213
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A7S1ACK7_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1ACK7_NOCSC)

HSP 1 Score: 128 bits (322), Expect = 1.070e-33
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:   13 ISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            +SHP IV  H A Q  S +YF+L + PGG+L +HLS+         RF+A+E+LLA++YLH+  I+ RDLKPENILLD  GHV+LTDFGLSK  +S    GAT+MCGT  Y+
Sbjct:   70 VSHPFIVQLHYAFQTPSKLYFVLEFCPGGELFFHLSRASRFSEGRCRFYASEILLAIEYLHRLNIIYRDLKPENILLDLEGHVKLTDFGLSKEGISD-NYGATSMCGTPEYL 180
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A7S0FKL0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FKL0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.260e-33
Identity = 61/116 (52.59%), Postives = 80/116 (68.97%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            V   + HP IV  + A Q K  +YF+L Y  GG+L +HLSK G       RF+A+E++LA+ Y+H+  I+ RDLKPEN+LLDARGHVRLTDFGLSK  +S  + GAT+ CGT  Y+
Sbjct:  229 VLGYVKHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLSKVGKFPEPRARFYASEIVLAISYVHELDIIYRDLKPENVLLDARGHVRLTDFGLSKEGISSSSSGATSFCGTPEYL 344
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A7S3L9Y4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L9Y4_9STRA)

HSP 1 Score: 129 bits (325), Expect = 4.550e-33
Identity = 60/110 (54.55%), Postives = 75/110 (68.18%), Query Frame = 1 
Query:   19 HPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            HP IV    A Q K N+Y +L + PGGDL +HL K   L     RF+AAE++LA+ YLH   ++ RDLKPEN+LLDA+GH+RLTDFGLSK  VS  + GA T CGT  Y+
Sbjct:  243 HPFIVGMRSAFQSKDNLYLVLDFCPGGDLFFHLGKLRKLSEERARFYAAEIILAISYLHSLDVIYRDLKPENLLLDAQGHIRLTDFGLSKDGVSNSSSGANTFCGTPEYL 352
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A7S0AFX3_9DINO (Hypothetical protein n=2 Tax=Gonyaulacales TaxID=40984 RepID=A0A7S0AFX3_9DINO)

HSP 1 Score: 125 bits (314), Expect = 2.080e-32
Identity = 60/112 (53.57%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:   13 ISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            +SHP IV  H A Q    +YF+L Y PGG+L +HLS+ G       RF+A+E+LLA++YLH+  I+ RDLKPENILLDA GHV+LTDFGLSK  +      A +MCGT  Y+
Sbjct:   74 VSHPFIVTLHYAFQTPKKLYFVLEYCPGGELFFHLSRAGRFSEGRCRFYASEILLAIEYLHRLNIIYRDLKPENILLDADGHVKLTDFGLSKEGIQD-NFSAKSMCGTPEYL 184
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A2T6IJE3_TOXGO (AGC kinase (Fragment) n=1 Tax=Toxoplasma gondii TgCATBr9 TaxID=943120 RepID=A0A2T6IJE3_TOXGO)

HSP 1 Score: 126 bits (317), Expect = 2.880e-32
Identity = 64/118 (54.24%), Postives = 82/118 (69.49%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRV--SCWTQGATTMCGTEPYV 348
            V A +SHP IV  H A Q +  +YF+L Y PGG+L +HLS+ G  K  A  F+AAEVLLA+++LH+  +V RDLKPEN+LLD  GHVRLTDFGLSK  V  +C    A ++CGT  Y+
Sbjct:  135 VLAWVSHPFIVQMHYAFQTRKKLYFVLEYCPGGELFFHLSRAGRFKEYAACFYAAEVLLALEHLHKYNVVYRDLKPENVLLDEHGHVRLTDFGLSKEGVEDNC---SARSLCGTPEYL 249
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: B8C3Y1_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C3Y1_THAPS)

HSP 1 Score: 123 bits (308), Expect = 7.880e-32
Identity = 59/116 (50.86%), Postives = 75/116 (64.66%), Query Frame = 1 
Query:    1 VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            V   + HP IV  + A Q K  +YF+L Y  GG+L +HL K G        F+AAE+ LA+ Y+H   IV RDLKPEN+LLD+RGHVRLTDFGLSK  +S  + GA + CGT  Y+
Sbjct:   50 VLGYVKHPFIVGLNMAFQSKDKLYFVLDYCAGGELFFHLGKVGKFSEHRACFYAAEITLAISYVHSLDIVYRDLKPENVLLDSRGHVRLTDFGLSKEGISNSSSGANSFCGTPEYL 165
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: F0WXK1_9STRA (Protein kinase putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WXK1_9STRA)

HSP 1 Score: 125 bits (313), Expect = 8.050e-32
Identity = 57/111 (51.35%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:   16 SHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            SHP IV  H A Q  S +YF+L Y PGG+L +HLS+ G    +  RF+AAE+++A+++LH   +V RDLKPENILLD  GH++L DFGL+K +V+    GAT++CGT  Y+
Sbjct:  129 SHPFIVGLHYAFQTSSKLYFVLDYCPGGELFFHLSRMGKFDENMTRFYAAELVVALEHLHSLGVVYRDLKPENILLDEMGHIKLADFGLAKDKVTEVDSGATSLCGTPEYL 239
[Close]
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Match: A0A7S1A0A0_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A0A0_NOCSC)

HSP 1 Score: 124 bits (311), Expect = 8.180e-32
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = 1 
Query:   13 ISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAVRFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVSCWTQGATTMCGTEPYV 348
            +SHP IV  H A Q    ++F+L + PGG+L +HLS+ G       RF+AAE+LLA++YLH+  I+ RDLKPENILLDA GHV+LTDFGLSK  +      A +MCGT  Y+
Sbjct:  102 VSHPFIVTLHYAFQTPKKLFFVLEFCPGGELFFHLSRTGRFTEGRCRFYAAEILLAIEYLHKMAIIYRDLKPENILLDAEGHVKLTDFGLSKEGIDD-NFSARSMCGTPEYL 212
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|163187 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1L0_9STRA8.180e-81100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S1ZV30_TRICV4.360e-3451.72Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1ACK7_NOCSC1.070e-3354.46Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S0FKL0_9STRA1.260e-3352.59Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S3L9Y4_9STRA4.550e-3354.55Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S0AFX3_9DINO2.080e-3253.57Hypothetical protein n=2 Tax=Gonyaulacales TaxID=4... [more]
A0A2T6IJE3_TOXGO2.880e-3254.24AGC kinase (Fragment) n=1 Tax=Toxoplasma gondii Tg... [more]
B8C3Y1_THAPS7.880e-3250.86Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
F0WXK1_9STRA8.050e-3251.35Protein kinase putative n=1 Tax=Albugo laibachii N... [more]
A0A7S1A0A0_NOCSC8.180e-3252.68Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_24contigContig_24:64484..65879 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|163187|e_gw1.24.87.1
BRITEko00000,ko00001,ko01000,ko01001
KEGG Pathwayko01521,ko01522,ko04012,ko04066,ko04068,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04350,ko04371,ko04666,ko04714,ko04910,ko04931,ko05165,ko05200,ko05205,ko05210,ko05212,ko05221,ko05224,ko05225,ko05226,ko05231,map01521,map01522,map04012,map04066,map04068,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04350,map04371,map04666,map04714,map04910,map04931,map05165,map05200,map05205,map05210,map05212,map05221,map05224,map05225,map05226,map05231
KEGG koko:K04688,ko:K08286,ko:K13303
EC2.7.11.1
Descriptionglycogen cell differentiation involved in embryonic placenta development
COG categoryKLT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0515@1|root,KOG0690@2759|Eukaryota
Evalue1.02e-33
Seed ortholog42099.EPrPV00000018460
Hectar predicted targeting categoryother localisation
TranscriptId163509
TrackFilteredModels1
ProteinId163187
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163187gene_7465Tribonema minus UTEX_B_3156 geneContig_24 64484..65879 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7465_1exon_7465_1Tribonema minus UTEX_B_3156 exonContig_24 64484..64669 +
exon_7465_2exon_7465_2Tribonema minus UTEX_B_3156 exonContig_24 65712..65879 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7465CDS_7465Tribonema minus UTEX_B_3156 CDSContig_24 64484..64669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|163187Trimin1|163187|e_gw1.24.87.1Tribonema minus UTEX_B_3156 polypeptideContig_24 64484..65879 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7465 ID=mRNA_7465|Name=jgi.p|Trimin1|163187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=354bp|location=Sequence derived from alignment at Contig_24:64484..65879+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTGCGCGCGCAGATCTCGCACCCGCTCATAGTGGCGTTCCACGGCGCAAT
GCAGGACAAGTCCAACGTGTACTTTCTGCTGGCGTATTACCCGGGGGGCG
ACCTCGCGTACCACCTCTCAAAGCACGGCGCGCTCAAGACGAGTGCCGTG
CGTTTCTTTGCGGCAGAGGTGCTGCTGGCTGTTCAGTACCTGCACCAGCA
GCGCATCGTCGTGCGCGACCTCAAGCCGGAGAACATACTGCTCGACGCGC
GCGGGCACGTTCGTCTCACCGACTTTGGCCTGAGCAAGCCGCGCGTCAGC
TGCTGGACGCAGGGCGCCACCACCATGTGCGGCACGGAGCCATACGTTGG
GTGA
back to top

protein sequence of jgi.p|Trimin1|163187

>Trimin1|163187|e_gw1.24.87.1 ID=Trimin1|163187|e_gw1.24.87.1|Name=jgi.p|Trimin1|163187|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=118bp
VRAQISHPLIVAFHGAMQDKSNVYFLLAYYPGGDLAYHLSKHGALKTSAV
RFFAAEVLLAVQYLHQQRIVVRDLKPENILLDARGHVRLTDFGLSKPRVS
CWTQGATTMCGTEPYVG*
back to top

mRNA from alignment at Contig_24:64484..65879+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7465 ID=mRNA_7465|Name=jgi.p|Trimin1|163187|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1396bp|location=Sequence derived from alignment at Contig_24:64484..65879+ (Tribonema minus UTEX_B_3156 )
GTGCGCGCGCAGATCTCGCACCCGCTCATAGTGGCGTTCCACGGCGCAAT
GCAGGACAAGTCCAACGTGTACTTTCTGCTGGCGTATTACCCGGGGGGCG
ACCTCGCGTACCACCTCTCAAAGCACGGCGCGCTCAAGACGAGTGCCGTG
CGTTTCTTTGCGGCAGAGGTGCTGCTGGCTGTTCAGGTTAGAACAAGAAC
CTTCAACAACACAAAAAAAAAACTTATTGTAACCAGAATCGTATGTACTA
CTTTGCATGTATGAGCGGAAGCATGGAAAGCAATGCCCAAGCACGGCGCG
CTCAACACGAGCGTAGTGCGCTTCTTCGCGGCCGAGGTGCTGCTGGCCGT
TCAGGTGACTAACTTCACATTCTACTTCTATACTCATGAACCCTACTGTC
AAGCGGTATGTATGTACCTCCCGTACCACCTCTCCAAGCACGACGCGCTC
AAGACGAGTGCGGAGCGGTTCTTCGTGCCCGAACTGCTGCTGGCTGTGCA
GGTGAAGACTTTCAAACCCTGCTTGTGTCGTCCAACTCCTACCATGTGAA
GATGCTGCCACGCTCGTTGTTTCTGCTAGGCCCAGACGGTACCCGCTCAT
GGCATTGTCGGCATCATTGGCAAGCATCAACGCTCTGCTTGCCTGACAAA
CTCCCCCTCCGATCACTCGAAACTTGAAACGCTGTGCCCGCCTCCAGCTT
GAACAGTACCTGCAGCAGCAGCGCGTTTTCGTGCGCGACCTCAAGCCGAC
GAACACAGTACGTTACTGCCACACCAGCCATTCTTCCCAGGCCCAAAATA
CAATACTCCAAGCAATACCGGACAATGCTGCAGCCACCCCAGCTTGCCCT
GCTGACCGCTCTGACTTCAACTGTTCAACTTCCCCAAACGTCAACAGTAC
CTCCACCAGCAGCGCTGGAGATGCACGCTGTTCTTTGTAGGTCCGAAAAA
TTCACTGAATGCAGTTGTTGTGCTCGCTCCCAACTTCAACAGTACCTGCA
CCAGCAGCGCATCGTCGTGCGCGACCTCAAGCCGGAGACCATCCTGTTCT
TTCTGGGCTCAGAAGAGTCCGCTCTTACCTCAACTTTCCAACTTCCCCCA
ACTTCAACAGTACCTGCACCAGCAGCGCATCGTCGTGCGCGACCTCAAGC
CGGAGACCATCCTGTTCTTTCTAGGCTCAGAAGAGTCCGCTCTTACCTCA
ACTTTCCAACTTCCCCCAACTTCAACAGTACCTGCACCAGCAGCGCATCG
TCGTGCGCGACCTCAAGCCGGAGAACATACTGCTCGACGCGCGCGGGCAC
GTTCGTCTCACCGACTTTGGCCTGAGCAAGCCGCGCGTCAGCTGCTGGAC
GCAGGGCGCCACCACCATGTGCGGCACGGAGCCATACGTTGGGTGA
back to top

Coding sequence (CDS) from alignment at Contig_24:64484..65879+

>mRNA_7465 ID=mRNA_7465|Name=jgi.p|Trimin1|163187|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=354bp|location=Sequence derived from alignment at Contig_24:64484..65879+ (Tribonema minus UTEX_B_3156 )
GTGCGCGCGCAGATCTCGCACCCGCTCATAGTGGCGTTCCACGGCGCAAT
GCAGGACAAGTCCAACGTGTACTTTCTGCTGGCGTATTACCCGGGGGGCG
ACCTCGCGTACCACCTCTCAAAGCACGGCGCGCTCAAGACGAGTGCCGTG
CGTTTCTTTGCGGCAGAGGTGCTGCTGGCTGTTCAGTACCTGCACCAGCA
GCGCATCGTCGTGCGCGACCTCAAGCCGGAGAACATACTGCTCGACGCGC
GCGGGCACGTTCGTCTCACCGACTTTGGCCTGAGCAAGCCGCGCGTCAGC
TGCTGGACGCAGGGCGCCACCACCATGTGCGGCACGGAGCCATACGTTGG
GTGA
back to top