mRNA_17952 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354376
Unique NamemRNA_17952
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A835Z4B6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4B6_9STRA)

HSP 1 Score: 558 bits (1437), Expect = 1.700e-196
Identity = 339/339 (100.00%), Postives = 339/339 (100.00%), Query Frame = 1 
Query:    1 MALASLRKPASPFEYPELRRGIKRRNAAETELRLYMEGMRSTVQDLVQQLQTSKNVRVATDAHMRALHAESTATYRPRXXXXXXXXXXXXXSAIDRAAFNARAARGIDXXXXXXXXXXXXXXXXAATQRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQQAADPPSKQPATPATDTAA 1017
            MALASLRKPASPFEYPELRRGIKRRNAAETELRLYMEGMRSTVQDLVQQLQTSKNVRVATDAHMRALHAESTATYRPRXXXXXXXXXXXXXSAIDRAAFNARAARGIDXXXXXXXXXXXXXXXXAATQRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQQAADPPSKQPATPATDTAA
Sbjct:    1 MALASLRKPASPFEYPELRRGIKRRNAAETELRLYMEGMRSTVQDLVQQLQTSKNVRVATDAHMRALHAESTATYRPRXXXXXXXXXXXXXSAIDRAAFNARAARGIDXXXXXXXXXXXXXXXXAATQRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQQAADPPSKQPATPATDTAA 339
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: D7FQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ19_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.260e-38
Identity = 90/212 (42.45%), Postives = 118/212 (55.66%), Query Frame = 1 
Query:  376 ATQRIAYGVTDD-GARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFD-------NGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQQAADPPSKQ 987
            AT RI +GV+D   AR RYE + G  R+T  A+   +A SPL+E                             A A V++FD       +G+     A +P +G+V PGDE AL  H D+TL        LLVYPPPGDMALRC+  Y GD +VYVGEGRGG NA + FF  L+  W VE ++ L+PFP+CFER+F+LRR+ + A    S+Q
Sbjct:  158 ATHRIIFGVSDPPDARRRYEAEHGNCRYTPEAIRLMSALSPLVEIGAGRG---------------HWQRGLSEAGATVISFDKWATTPSSGNERGTTAGMPQIGRVLPGDEHALRLHRDKTL--------LLVYPPPGDMALRCLHEYRGDTLVYVGEGRGGANASDEFFDGLDAEWDVENILDLDPFPQCFERLFLLRRRQRTAVGASSQQ 346
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: F2U2F6_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U2F6_SALR5)

HSP 1 Score: 138 bits (347), Expect = 5.990e-35
Identity = 82/200 (41.00%), Postives = 111/200 (55.50%), Query Frame = 1 
Query:  379 TQRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQQAADPP 978
            +Q I YG  +  AR +Y   +GCARWTE AL   A++SPLIE          A                     DV+AFDN S+ QP  A  PV +V PGD + +  +P RTL        LLVYPP  DMAL+C + + G+ ++YVGE RGGVNA++AFF  ++E +    +  L+PFP C ER+++LRRKP+     P
Sbjct:   38 SQIIIYGTAERHARQKYLAKYGCARWTEDALNTIASFSPLIEIGAGQGHWAKA---------------LRKLGVDVMAFDNDSTEQPGTA--PVSQVRPGDHTKIGWYPRRTL--------LLVYPPETDMALQCAQEFRGNYLIYVGEARGGVNANDAFFNHVDEQFDCVHIQDLDPFPRCHERLYVLRRKPEHRTAQP 212
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A061SI58_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SI58_9CHLO)

HSP 1 Score: 140 bits (353), Expect = 1.040e-34
Identity = 86/195 (44.10%), Postives = 111/195 (56.92%), Query Frame = 1 
Query:  379 TQRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQQ 963
            TQ I YGV + GARARY   +GCA W+E A+ A A +SPLIE                     +         AD++AFDNG++  P   LP VG+V  GD   L +H  RTL        LL YP  G+MA +C+  Y G+ ++YVGEGRGGVNA + FF  LE  W  E+VI L+PFP  FER+F+LRR+ +Q
Sbjct:  140 TQIILYGVRERGARARYMAKYGCAAWSEEAIRAVAGFSPLIEIGAGKG---------------QWQAELSRRGADIIAFDNGAA-VPCPELPAVGEVRHGDHRELRRHRGRTL--------LLCYPE-GEMAEQCLELYGGEWLLYVGEGRGGVNATDEFFRRLEAEWVCEQVIQLQPFPGNFERLFVLRRRNRQ 309
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A250XG93_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XG93_9CHLO)

HSP 1 Score: 134 bits (336), Expect = 1.070e-31
Identity = 78/192 (40.62%), Postives = 107/192 (55.73%), Query Frame = 1 
Query:  379 TQRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRK 954
            +Q+I +GV +  AR  Y   +GC RWTE AL    ++SPLIE          A  +                 ADVLAFD+GS+  P+  +  VG+V  G+E  + +HP RTL        LLVYP P DM L C+  Y G  ++YVGE RGG+N +  FF  LE  W  ERV+ L+PFP+ +E+++IL+RK
Sbjct:  207 SQKIIFGVDEPNARKSYLERYGCTRWTEEALQVIKSFSPLIEIGGGHGHWQKALTSI---------------GADVLAFDDGSA-LPVLGMDNVGEVQKGNEKEIRRHPRRTL--------LLVYPGPTDMGLNCLNEYRGRYLLYVGEPRGGINGNEQFFNELEREWTCERVVPLDPFPDGYEQLYILKRK 374
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A7S2GQ02_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GQ02_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.890e-28
Identity = 81/193 (41.97%), Postives = 101/193 (52.33%), Query Frame = 1 
Query:  382 QRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGK--VAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRK 954
            +   Y     G+R  Y  ++GCA WTE AL A       I A   P I+ + A       G +       A ADVLAFDN         +    K  V  GDE  L +      P      LLLVYPP G MA  CVR YSGDVI++VGEGR GVNAD+AFF  LE+GW++E  + L PFP  FE+++I+ RK
Sbjct:    6 ENAMYPGAPRGSRRTYLEEYGCAAWTEPALLA-------IIAKAGPRIVEIGA------GGGQWKTALEAAGADVLAFDNRIEKDTPQYVTSKTKEIVLQGDERKLQE------PGMEKRALLLVYPPQGPMAANCVRLYSGDVIIFVGEGRSGVNADSAFFDLLEDGWKLECKLPLAPFPGGFEKLYIVYRK 179
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A2R5GST6_9STRA (MFS_1_like domain-containing protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GST6_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.810e-26
Identity = 77/196 (39.29%), Postives = 108/196 (55.10%), Query Frame = 1 
Query:  382 QRIAYGVTDDGARAR--YERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQ-PLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRRKPQ 960
            QR+ +GV+ + A AR  Y + +GC +W+E A+   AA  P++E               A +   R          D++A+D+ S    P         V  G+E+ L KH DRTL        LLV PPP +MA +C+ AY GD +VYVGEGRGG +AD+ FF  LE  W+VE +I + PF EC+E+ FIL+RKP+
Sbjct:  531 QRLIFGVSPEQAHARDEYLQAYGCVKWSEQAMQKIAALGPIVELG-------------AGYGQWRQELAQQH-KVDIIAYDDYSQLYLPSEKAREETGVLEGNETVLRKHRDRTL--------LLVCPPPNEMASKCMSAYRGDRLVYVGEGRGGAHADSDFFNTLESKWEVEEIIDVLPFSECYEKCFILKRKPR 704
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A7S1RWX2_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RWX2_ALECA)

HSP 1 Score: 116 bits (290), Expect = 5.530e-26
Identity = 74/192 (38.54%), Postives = 99/192 (51.56%), Query Frame = 1 
Query:  376 ATQRIAYGVTDDGARARYERDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRR 951
            A  R+ Y         R   ++G  +WTEAAL AA A SPL+E          A A                  ADVLA+D+ SSP     L  +G+V+ G E  + +H DR +        LLVYP PG MA  C+  Y+GD +VYVGEGRGGVN D+AFF A+   W++ R   ++  P  +E M+IL+R
Sbjct:  128 AAHRLLYPTLSPEELRRRREEYGAVKWTEAALHAAVAVSPLVEVGAGRGQWQRALAGL---------------GADVLAYDDMSSPSTRLGL--IGQVSQGSEDVVRRHADRAM--------LLVYPNPGPMAYNCLGNYAGDTLVYVGEGRGGVNGDDAFFDAVSADWKLIRSEPVDRLPGGYEHMYILQR 294
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A812SF89_SYMPI (Hypothetical protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812SF89_SYMPI)

HSP 1 Score: 109 bits (273), Expect = 1.600e-25
Identity = 60/123 (48.78%), Postives = 76/123 (61.79%), Query Frame = 1 
Query:  604 VLAFDNGSSPQPLAALPPVGKVAPGD-------ESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRR 951
            V AFD+ SSP      P    V  G        E AL + P RTL        LLVYPPPG MA+RC+ +Y+GDV++YVGEGRGGVN DNAFF AL  GW++E  I L+  P  +E++++LRR
Sbjct:    1 VTAFDDHSSPSRFGQNPASRLVVRGADVQQADAEEALRRSPGRTL--------LLVYPPPGPMAIRCLTSYTGDVLLYVGEGRGGVNGDNAFFDALSMGWKLEETIELDALPGSYEKLYLLRR 115
[Close]
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Match: A0A812QMF7_9DINO (Hypothetical protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812QMF7_9DINO)

HSP 1 Score: 110 bits (274), Expect = 5.710e-25
Identity = 63/173 (36.42%), Postives = 88/173 (50.87%), Query Frame = 1 
Query:  433 RDFGCARWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAXXXXXXASADVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLXXXXXLLLVYPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVITLEPFPECFERMFILRR 951
            R +G  +WTEAA+   A +SPL+E                     +         ADV AFD+ SSP          ++A G         +  +       LLLVYPPPG MA+RC+  Y+GD ++YVGEGRGGVNAD  FF AL  GW++E  + L+  P  +E+++ L+R
Sbjct:   15 RTYGNVKWTEAAMQLVARHSPLVEVGAGEG---------------QWQSELRRRGADVTAFDDHSSPSRFGEGAKTSRLAVGGADVQQADAEEAMRRSQGRTLLLVYPPPGPMAMRCLARYAGDALLYVGEGRGGVNADGPFFDALSVGWKLEETVELDNLPGSYEKLYHLQR 172
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354376 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z4B6_9STRA1.700e-196100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7FQ19_ECTSI3.260e-3842.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F2U2F6_SALR55.990e-3541.00Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A061SI58_9CHLO1.040e-3444.10Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]
A0A250XG93_9CHLO1.070e-3140.63Uncharacterized protein n=1 Tax=Chlamydomonas eust... [more]
A0A7S2GQ02_9STRA4.890e-2841.97Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A2R5GST6_9STRA1.810e-2639.29MFS_1_like domain-containing protein n=1 Tax=Honda... [more]
A0A7S1RWX2_ALECA5.530e-2638.54Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812SF89_SYMPI1.600e-2548.78Hypothetical protein n=1 Tax=Symbiodinium pilosum ... [more]
A0A812QMF7_9DINO5.710e-2536.42Hypothetical protein n=1 Tax=Symbiodinium natans T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_235contigContig_235:143323..150616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354376|estExt_Genemark1.C_Ctg_2350019
Max annot lvl2759|Eukaryota
EggNOG OGs2CY15@1|root,2S189@2759|Eukaryota
Evalue3.55e-18
Seed ortholog157072.XP_008870195.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_007820.1
TranscriptId354698
TrackFilteredModels1
ProteinId354376
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354376gene_17952Tribonema minus UTEX_B_3156 geneContig_235 143323..150616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354376Trimin1|354376|estExt_Genemark1.C_Ctg_2350019Tribonema minus UTEX_B_3156 polypeptideContig_235 143323..150616 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17952_1exon_17952_1Tribonema minus UTEX_B_3156 exonContig_235 143323..143484 +
exon_17952_2exon_17952_2Tribonema minus UTEX_B_3156 exonContig_235 144133..144193 +
exon_17952_3exon_17952_3Tribonema minus UTEX_B_3156 exonContig_235 144315..144370 +
exon_17952_4exon_17952_4Tribonema minus UTEX_B_3156 exonContig_235 144482..144520 +
exon_17952_5exon_17952_5Tribonema minus UTEX_B_3156 exonContig_235 144628..144842 +
exon_17952_6exon_17952_6Tribonema minus UTEX_B_3156 exonContig_235 144894..144955 +
exon_17952_7exon_17952_7Tribonema minus UTEX_B_3156 exonContig_235 146744..146847 +
exon_17952_8exon_17952_8Tribonema minus UTEX_B_3156 exonContig_235 147056..147079 +
exon_17952_9exon_17952_9Tribonema minus UTEX_B_3156 exonContig_235 147401..147562 +
exon_17952_10exon_17952_10Tribonema minus UTEX_B_3156 exonContig_235 148225..148343 +
exon_17952_11exon_17952_11Tribonema minus UTEX_B_3156 exonContig_235 150391..150616 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17952CDS_17952Tribonema minus UTEX_B_3156 CDSContig_235 143323..143484 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17952 ID=mRNA_17952|Name=jgi.p|Trimin1|354376|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1230bp|location=Sequence derived from alignment at Contig_235:143323..150616+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCACTGGCCTCTCTCAGGAAGCCCGCCTCGCCCTTCGAGTACCCGGA
ACTCAGGCGAGGTATCAAGCGGCGCAATGCGGCGGAGACGGAGTTGCGGC
TATACATGGAAGGCATGCGCAGCACGGTGCAAGACCTGGTGCAGCAGTTG
CAGACAAGCAAGAATGTTCGCGTCGCCACCGACGCGCACATGCGGGCGCT
GCACGCGGAATCCACTGCCACCTATCGACCGCGCGCCGCCTTCGACGCGC
GCATGCGCGCGCTGCGCGCTGAGTCCGCGATCGACCGTGCCGCCTTCAAT
GCGCGCGCTGCGCGCGGAATCGACCGCGCTGCCTTCGACGCGCGCATGCG
CGCGCTGCGCGCGGAGTCCGCCGCCGCGACGCAGCGCATCGCGTACGGCG
TGACGGACGACGGCGCGCGCGCGCGCTACGAGCGCGACTTTGGCTGCGCG
CGCTGGACCGAGGCAGCGCTCGCCGCCGCCGCCGCCTACTCGCCGCTCAT
CGAGGCAAGCAACGCGCCGAACATCTTGACGCTAGCGGCAGCAGCAGCTG
CGCCGTTTAACGGCTGTCGAGCCTACTCGCCGCTCATCGAGGCAAGCGCG
GACGTCCTCGCCTTTGACAACGGCTCCTCTCCGCAGCCGCTCGCCGCGCT
GCCGCCCGTCGGCAAGGTCGCCCCCGGCGATGAGTCAGCGCTCAGCAAGC
ACCCCGACCGCACGCTGCCGCTGCACCCCGACCGCACGCTGCTGCTGGTG
TATCCGCCGCCCGGCGACATGGCGCTGCGCTGCGTGCGCGCGTATAGCGG
CGACGTGATAGTCTACGTCGGGGAGGGGCGCGGCGGCGTCAACGCGGACA
ACGCGTTCTTTGCCGCGCTCGAGGAGGGGTGGCAGGTGGAGCGCGTCATC
ACTCTGGAGCCGTTCCCTGAGTGCTTTGAGCGCATGTTCATCCTGAGGCG
CAAGCCGCAACAAGCAGCGGACCCGCCGTCCAAGCAGCCTGCCACGCCAG
CCACTGATACCGCCGCCGCCACCGATCCCGGGCCCGCCGCCAATCCCGGG
CCCGCCGCCGATCCCGGGCCCGCCGCCGATCCCGGGCCCGCCGCCGATAC
CGGGCCCCCCGCCGATACCGGGCCCGCCGCCGATACCGGGCCCACCGCCG
ATACCGGGCCCGCCGCCGATACCGGACCCGCCACCGATACCCGGCCCGCC
ACCACCTCAGCTGATGGCCCAGAGCTCTAG
back to top

protein sequence of jgi.p|Trimin1|354376

>Trimin1|354376|estExt_Genemark1.C_Ctg_2350019 ID=Trimin1|354376|estExt_Genemark1.C_Ctg_2350019|Name=jgi.p|Trimin1|354376|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=410bp
MALASLRKPASPFEYPELRRGIKRRNAAETELRLYMEGMRSTVQDLVQQL
QTSKNVRVATDAHMRALHAESTATYRPRAAFDARMRALRAESAIDRAAFN
ARAARGIDRAAFDARMRALRAESAAATQRIAYGVTDDGARARYERDFGCA
RWTEAALAAAAAYSPLIEASNAPNILTLAAAAAAPFNGCRAYSPLIEASA
DVLAFDNGSSPQPLAALPPVGKVAPGDESALSKHPDRTLPLHPDRTLLLV
YPPPGDMALRCVRAYSGDVIVYVGEGRGGVNADNAFFAALEEGWQVERVI
TLEPFPECFERMFILRRKPQQAADPPSKQPATPATDTAAATDPGPAANPG
PAADPGPAADPGPAADTGPPADTGPAADTGPTADTGPAADTGPATDTRPA
TTSADGPEL*
back to top

mRNA from alignment at Contig_235:143323..150616+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17952 ID=mRNA_17952|Name=jgi.p|Trimin1|354376|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7294bp|location=Sequence derived from alignment at Contig_235:143323..150616+ (Tribonema minus UTEX_B_3156 )
ATGGCACTGGCCTCTCTCAGGAAGCCCGCCTCGCCCTTCGAGTACCCGGA
ACTCAGGCGAGGTATCAAGCGGCGCAATGCGGCGGAGACGGAGTTGCGGC
TATACATGGAAGGCATGCGCAGCACGGTGCAAGACCTGGTGCAGCAGTTG
CAGACAAGCAAGGTGCAGTTGCAGACAAGCAAGGTGCTCACGTCTGAAAC
TGACAACAGCCTGCTCACATGGCGTGCTGTCGTGAGCCAGCGCTTCTGAG
GGGGATGGTGCTGCGTCGCTGAGCTGTCCCTGCGTTGACAGGTACGCAGC
TGTTGACAGCAGTCGTAGCAGTAGAAGCAGCTGCACGAGGTGCCGTTGAA
GCACGCCTCATTCCTCAGAGCAGACTCCGCGCCTTCTCGCGTATGGAGCA
CATCCCCTCAGCTGCAGCGGATGGCTCACTTTACGCGCACACGCCCACCT
GTCATGCTGGCTATTGTTGTTTGAGAGCAAGTTCCATGCGCATGCCTTCA
TTTACCCGTCCGCATCCTGATCCCGCCTCGGGCGCAGCGCGCAGGCACAC
ACCGAGACCTGGTGCTGTACAGTATGTATTGAGATTATCGTCTTTGTGGG
TGCCGGCAAGGCTGCAGCAACGCGGCGCTGTGCACTGTATTAAGAATTCA
ATGCTGAGTCACGGATGCCTGGGCGTGCAGCGCCCCCCTTCATTCAACTG
TTGAACTTCAACAGCAGACCCCCCAAAGGCACATTAATCCATGAAATGTA
CATTTCCACACCTGGTAAACAATTGAGTACATGGGCGCATGTGTGCTGGC
TGCCGTGCAGAATGTTCGCGTCGCCACCGACGCGCACATGCGGGCGCTGC
ACGCGGAATCCACTGCCACCTGTACACTTCAAAGTGCATGATATGTTCGC
CAACTTCACTTTTCATGTGGCGAACACTGTGCCTTCCCCTCAACGGACCG
CCATCTACATGTAACGCGCACGCGCAACGTGCCGCCGCGCAGATCGACCG
CGCGCCGCCTTCGACGCGCGCATGCGCGCGCTGCGCGCTGAGTCCGCGGT
CATGTTTGGTGGCGTCATGTGCTTTCCCTTTGTGCGCTGAACAGTATTGT
CGCCGCTCAATAGACAGTTACATACATGGCCGCATGTGCGGTGGCTGCCT
GCCGCGCAGATCGACCGTGCCGCCTTCAATGCGCGCGCTGCGCGCGGAGT
CCGCCGACTTGTGTACACCATGAAGTGCACTGTGATGTGTGTACATACCT
TGTACTTTTCGTGCAGCAAACACTCGTCACTTCCCTTGAACCCGCCGCCG
CGCAGATCGACCGCGCTGCCTTCGACGCGCGCATGCGCGCGCTGCGCGCG
GAGTCCGCCGCCGCGACGCAGCGCATCGCGTACGGCGTGACGGACGACGG
CGCGCGCGCGCGCTACGAGCGCGACTTTGGCTGCGCGCGCTGGACCGAGG
CAGCGCTCGCCGCCGCCGCCGCCTACTCGCCGCTCATCGAGGCAAGCAAC
GCGCCGAACATCTTGACGCTGTACTTGGAATAGTATTCAGCAGAGCTGTG
CTTTGTCGCTGAGTCGCCCAGAGCGGCAGCAGCAGCTGCGCCGTTTAACG
GCTGTCGAGCCTACTCGCCGCTCATCGAGGCAAGTGCTTGCGCCACAAGG
GTTTAGTGTTGAAGTTGGAGTAGGGTCGAGCAGCGCTGTGCTTTTCGCTT
GCTCTGTGGGAGCAGCAGAGGGTTCTTTTCGGTTCAGCGTCAAGCCATCG
CAACAATACGCGTGTCATTTGCTTCCTGTAATAAGCTCGGTAGCAGAGCA
GCAGCCGCGGCGGCAGCAGCAGTGGGGTGTTGTTATCTCTGAGTGCTGGC
CCGCGCATTACGGCCGCATAATGTCAACACTTTATTGACAGACACAGGCA
GGGCTTGACGCCACCGCCACGCATGTCTGTTGTGAGGCAAGTGATGTGTC
TTACAGGGCACGAATCTCGTTTGCGAAGAGGCCGTTGTGGGTGGGTGTCA
CAGGGTTTGTAGAGTGAAGGCTAGGTTTAGGGTTCGGGTTCGGGTTAGCA
GCAGCACCTTCACCACCATCAGCAGCAAGTGTCGTCACTTTACCACTTGG
TGCATCTAGCTTGACTGCCACGTGCGTCGTGCCGAAACAGAACCACGTAA
GGAATAACAGCACCCAGCATCACTGCAACGCATGCCGATGTACTGCCAGG
TTGTGCACATCGTCCGCATGCACTGCCATTGAGTTGCGGTCATTGCCAGC
TTGAAGTTCACATCGTCACTTTCAGGTGCACTCTGCCGGTCGCGATGCAG
CAGGGCAGGCTGCTGTAGTGCAGATAGTCAATGTAATCAACATGCGATGC
GCGCTTTGGCGTGCGCAACGTAAGCGATAAACATGCATCACCCTTACTCC
TGACCCCTATACCTAGTCCCAACCCTAACCCAACCCTCAGCTAACATCCT
AGTCGGCGCTCGTCTCGCATACTTCGCGATGCCTTAAACGTCACAGGGCG
CAATACCACACTCTCGGCACAATGGCGGGGCTGAGAGTCAAACGCAACAA
TGCAAGCTGCCCGACACACCATCTCACGCGCTTCCCAACGCATTCCTGCT
CACACAGTGTGGCGCAGAGCCATTTGGGAGGGGGGCGGGGTGTCAAACAG
TCATTGACTGGTGCAAATACAACCTCTTTGCGGATACGTTTCTGCTAAGC
GCGCTTGTGGGACCATCAAGTGTGAATGCTTACTGCGCAGATTGGTGCGG
GGACGCGGCCACTTATCCTAACCCTAACCCTAACCTAGCCCTCAGCTCAC
GCTCCCTACCGTCTGCGCATGTCTCACGTACTTCACACCTTTCGCAGGGC
ACACTCTCGGCACAACACAGGCCCCAAAATGCCAGGCACACCATCTCACG
CACTTCCCAATGCGTTCCTGCTCACATACATGGGCGCGGCACGTGGTCAC
TGGCAGCGGGCGCTGTCGCGCGCAGGCGCACCCCTCATGTTGATCCTCAA
CTCCAGCTCTCACTTTCAATTAACACTCAGCCCCCGCTTTCTGAGTTGGC
GCATGTCTCACATACTTTGCGATGCCATCGGCGTCACGGGGCGCAACCTC
ACGCTCCTGTCACCGTGCCATGCCCGAACTCTTCAGCAGCGAAAAACCAA
CGCAACAATGCGAGCTGCCAGACACCATAGCACGCGCTTCCTGCTGCATT
CCTGTCCACGCAGATCGGCGCAAGGCCAATTTGGGGGGGGGGGGGGGGGG
GGGGGTGGATAGCAACCGCCACAAATGAAAACGAATCAAAAGATCGAAGA
CAATATCGCCTCTCTGCCAATGCATTCCTGCTCACGCGCTTGCGGGACCA
CCACGTGTGAACGCTTGCTGCGCAGATTGGCGCGGGGCGCGGTCATTGGC
AGCGAGCGCTGTCACGCGCAGGCGCGGACGTCCTCGCCTTTGACAACGGC
TCCTCTCCGCAGCCGCTCGCCGCGCTGCCGCCCGTCGGCAAGGTCGCCCC
CGGCGATGAGTCAGCGCTCAGCAAGGTGTCAAACGATGCTAATAATGCGT
TCCTGACTGCCACGTTCGCGTGGTTGTCGTGCGCGGTTGTGTGAAGCGTG
TGTGAATTCAGGCTGCGTCTTCGTACGGCGTGGCGGCTGTCGTGCTGTGC
GCACCATAGCAGCAAACCCGAGTGCGCCATCTGGTACCGGGGGATACACG
GCCGCTGCTGCCGCTGTGCGCTCCGCGGCGCAGCACCCCGACCGCACGCT
GCCGCTGGTATGCCGCATGGCGGTACTGCGCGCGCGATCCACGCACTTGA
AGTAGATCAACTTCAACTCTGTGCTCGCCCGGAATGCCCCTATGCGCAAA
GCCTGATGCCCATCTAGCAACACAATCTCTTGCTGAAATGAGCACATGCC
AGCAAACCTGAGTGCACAACATGACAACAACCCCGAGTATGCCATCTGCT
AACGGGGACGCACGGCCTCTGCTGCCGCTGCTGCTGCTGCTGCCGCCGCT
GCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCGC
TGCTGCTGCTGCGCGCTCCGCGGCGCAGCACCCCGACCGCACGCTGCTGC
TGGTGTATCCGCCGCCCGGCGACATGGCGCTGCGCTGCGTGCGCGCGTAT
AGCGGCGACGTGATAGTCTACGTCGGGGAGGGGCGCGGCGGCGTCAACGC
GGACAACGCGTTCTTTGCCGCGCTCGAGGAGGGGTGGCAGGTGCGTCGCG
CAGCGCACGCGAGTCAGAGTCATGAGTGGAGACCGATGCGAGCAGTGCAC
TTCATGCAGGAGTATCGTGGGGCGAAGCTGATGCGCGAGACGCTTAGGGG
CAGAGATAGGGTTAGGGTTAGGGTTAGGGTCAGGGTTAGGGTTAGAACCC
TAACCCTAACCCTAACCCTAGGGCAGGAATATGGGATACATTGCGTGACG
GCAATGGTGGCTCTCACGCAGTTGAAGCGGGCTCGCCGCGCGCACGACAG
CATAGGAATGAAAGCTGGAACATGATCGCGAGCATCTCAGTATCAGAATT
AGAGTAGTTCATGCAGGTGCAGGTGGCAGCAGGGCAGTCACCATGCCGGC
CATGCTGTTCTCAACAAGCGTGAAGGGGAGGGAGGTTGGCAGGTAAGCCG
GTGCGTGAGGAATGCCACCAATATGTTCGATAGGGTATAGGCAAATCTAG
GTTGCCTCTATCCCCAGAGGGCCTGTGCGCGAGCAACTTTCAGACCGCTT
GTGCAGGCAGTGCCCAATCGTGGTAGGTGGATCGGACCACAGTGTTCATC
TGAGTAAGTGACGAATCACGCTGCGGCAGTGCTCAAAACCCGAACGCAGT
CACTTCAGAAAAAGGAAGAAGTTCAACTCGTGTCGCTTGCTTTTGGCTGC
AGGTGGAGCGCGTCATCACTCTGGAGCCGTTCCCTGAGTGCTTTGAGCGC
ATGTTCATCCTGAGGCGCAAGCCGCAACAAGCAGCGGACCCGCCGTCCAA
GCAGCCTGCCACGCCAGCCACGTGAGGTGCTGGCCCAGTAGATTCGTGCC
GCTGAAGCGTGGGGGTGAATGGAAGCGCACAGTGCCGCCTGAGCTTGCAG
CCTTGAGTTCACAAGGCGCCGTGGCGGCAACCACAGCGGCTGCTGAACAC
GGTCATTCTACAATGTCGGGGGCGCAGAGGCCACGCAACATAGCTGGCAT
GCTTTGAGTCATGACCACTGACGGGGTCACCTGCATGCTCCTGAGGTTTA
CTGGGTCGGCCCTTATGGACGGCTGTCATGCACGCACTTGGCTGCGGTGC
CGAACTCTGTCTTGTTGCACGAAACAAACGCTGGACTATATCGGCCAACA
CATAATGAAGCTTCCAGACACTTCCTGTGCCAACACCGCGTCTTTGCTAG
CGTGAATCGCCCGATGTCTCAATGATGGGATGTTCTCGCATCGCTCATGT
TGGCTCGGATGACCCCCAGAGCCTGTTGAGATGACAGCAGCTCATAGCGA
GCGTACACCTGCGGCAGGCTTAATTATAGCGTTGTCCACTGTGTTTGCAA
CCACCAGGGGCTGGCTTGCGCACGCGGTGTCGCCCATTCTCATTGGTCAG
CTAGCCTACATAATGATGCACGCAAGCATGCTGACACGAATGAGCCAACC
CCTTAAACAATGCAAGCAGCCAGCAGGCTCGCACACAGTTGGCAGCAGAA
CAGGATACAAAAATGACAACAACGCACTGCGGACCATGCATTCACAGGCT
GGAGTGCACCACTGCTGCCCTCAGCATACACACCAAGAGAGCCTTTCACC
AAGACAACTCTGAACAGTAACCTTAGCCAGGGACACAAAACGCGCACAGC
TGCTACTGCCTGTGCGCCACAACAGGTGTAGTCACTTCAGGAATTCATCT
AGCGCATTGCCATGCTGCCAGCCGCCAATGTGCATGGCCTGCTGGCTGCA
CATGTCTGTAAAAGCTCGCCATGTGTCCTGTCAGCCTGGCTTGTAAGCGG
TAGAGGAGGTCGCTGTATACCGGTCTACCGGCCAGTGCTGGAGCGTAACT
GAGCCTTGGGAAGTACATTGCAGACATAGTACAAATTGTCAACAGGAGGA
GGCAGCGAAGGAGGAGCCGCTGGCGGAGCGGCGGCGCGGAAGGCGAGGAT
GCACAGGGGACACTGAGGGCACAGCAGCACCGCACGCTCAACCTGTCGGC
CTGGCTACAGCCGAGGACTAGAGAGCGGATTTTCGCTCCACCGCGGGCCT
GAGGCGAACAAGGCCAGACACGCAGCGTGGGTCGCCGGTGTAAGCAAGTA
AGCCTCGCATTGATATTGCTAAAGCTACCTACGCACACAGCGACATCGGC
CGAAGCACAAAAAGGGCAAACTAAAAAAACTAAAAAAAAAAAAAAGAAAA
CATCAGACGATATCGCCGTCGACGGATCGGGAAGGGGGAACCTAGGGCAC
ACTGGATCGCAGGGCAGTAGATAGCAGTTCACCAGATTAAGGTTTGAACG
CTTGCTGACCAGCTTGATTTGCAGCCGCACAAGGGACCTCGCCTGGCAGA
GACTGACTGCATTCAGCACACGCACAGACACGACAGGACCACGACACTGC
AGCGGCAAGGACACGAATTGCACAGCATTGCATTCAACCTAGCTGCCTTG
TGTTGGTCAGAGGCAGAGAGCTTGAGCACACCGACTCGTTCCACCACCGC
TCGTTTCACGACGGCGGGAAAAGCACCTCACCAGATAAACCAGAGCAGGG
AGTGATCTTGAACTGGTAGTGGTATAGCTGTGCAGGGACGTGTTCGCGGT
AGGCAGCCGCGCTTTCGAGATCGAGCCTGGGCTCTTTTTTTTTTTTTTTT
TTTTTTCTCTCGCCCCTCAAAGTCGCCTTTCAAAGCTATGGCCCTCCACT
GGCTTACCAGCCCTACCTCACATGGGGAGGGGTCACCTCTGAAACGCAAA
CGGGAACAGCGCAACCACGGGCTGAATACTGGCTTGTGGTGGTGGCAGGT
CAAAGCTGCACGCCAATCTGACACACGCCGCAGACGCCGCCATGGTGTTG
GCCGTTGGGTACGCCTAGTGATACCGCCGCCGCCACCGATCCCGGGCCCG
CCGCCAATCCCGGGCCCGCCGCCGATCCCGGGCCCGCCGCCGATCCCGGG
CCCGCCGCCGATACCGGGCCCCCCGCCGATACCGGGCCCGCCGCCGATAC
CGGGCCCACCGCCGATACCGGGCCCGCCGCCGATACCGGACCCGCCACCG
ATACCCGGCCCGCCACCACCTCAGCTGATGGCCCAGAGCTCTAG
back to top

Coding sequence (CDS) from alignment at Contig_235:143323..150616+

>mRNA_17952 ID=mRNA_17952|Name=jgi.p|Trimin1|354376|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1230bp|location=Sequence derived from alignment at Contig_235:143323..150616+ (Tribonema minus UTEX_B_3156 )
ATGGCACTGGCCTCTCTCAGGAAGCCCGCCTCGCCCTTCGAGTACCCGGA
ACTCAGGCGAGGTATCAAGCGGCGCAATGCGGCGGAGACGGAGTTGCGGC
TATACATGGAAGGCATGCGCAGCACGGTGCAAGACCTGGTGCAGCAGTTG
CAGACAAGCAAGAATGTTCGCGTCGCCACCGACGCGCACATGCGGGCGCT
GCACGCGGAATCCACTGCCACCTATCGACCGCGCGCCGCCTTCGACGCGC
GCATGCGCGCGCTGCGCGCTGAGTCCGCGATCGACCGTGCCGCCTTCAAT
GCGCGCGCTGCGCGCGGAATCGACCGCGCTGCCTTCGACGCGCGCATGCG
CGCGCTGCGCGCGGAGTCCGCCGCCGCGACGCAGCGCATCGCGTACGGCG
TGACGGACGACGGCGCGCGCGCGCGCTACGAGCGCGACTTTGGCTGCGCG
CGCTGGACCGAGGCAGCGCTCGCCGCCGCCGCCGCCTACTCGCCGCTCAT
CGAGGCAAGCAACGCGCCGAACATCTTGACGCTAGCGGCAGCAGCAGCTG
CGCCGTTTAACGGCTGTCGAGCCTACTCGCCGCTCATCGAGGCAAGCGCG
GACGTCCTCGCCTTTGACAACGGCTCCTCTCCGCAGCCGCTCGCCGCGCT
GCCGCCCGTCGGCAAGGTCGCCCCCGGCGATGAGTCAGCGCTCAGCAAGC
ACCCCGACCGCACGCTGCCGCTGCACCCCGACCGCACGCTGCTGCTGGTG
TATCCGCCGCCCGGCGACATGGCGCTGCGCTGCGTGCGCGCGTATAGCGG
CGACGTGATAGTCTACGTCGGGGAGGGGCGCGGCGGCGTCAACGCGGACA
ACGCGTTCTTTGCCGCGCTCGAGGAGGGGTGGCAGGTGGAGCGCGTCATC
ACTCTGGAGCCGTTCCCTGAGTGCTTTGAGCGCATGTTCATCCTGAGGCG
CAAGCCGCAACAAGCAGCGGACCCGCCGTCCAAGCAGCCTGCCACGCCAG
CCACTGATACCGCCGCCGCCACCGATCCCGGGCCCGCCGCCAATCCCGGG
CCCGCCGCCGATCCCGGGCCCGCCGCCGATCCCGGGCCCGCCGCCGATAC
CGGGCCCCCCGCCGATACCGGGCCCGCCGCCGATACCGGGCCCACCGCCG
ATACCGGGCCCGCCGCCGATACCGGACCCGCCACCGATACCCGGCCCGCC
ACCACCTCAGCTGATGGCCCAGAGCTCTAG
back to top