mRNA_17840 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354338
Unique NamemRNA_17840
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A835YZR2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR2_9STRA)

HSP 1 Score: 568 bits (1463), Expect = 1.060e-199
Identity = 304/304 (100.00%), Postives = 304/304 (100.00%), Query Frame = 1
Query:    1 MTAAMDTVKSWAGLWQFSWRSKGYHKVPTIITIWFWILKVLCTTVGEPIADYLRDDALGLPNAFYVTAAIMLAVLGVYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEVPDLKDRAGAAVAGAVETVASVLEAGKNAQLD 912
            MTAAMDTVKSWAGLWQFSWRSKGYHKVPTIITIWFWILKVLCTTVGEPIADYLRDDALGLPNAFYVTAAIMLAVLGVYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEVPDLKDRAGAAVAGAVETVASVLEAGKNAQLD
Sbjct:    1 MTAAMDTVKSWAGLWQFSWRSKGYHKVPTIITIWFWILKVLCTTVGEPIADYLRDDALGLPNAFYVTAAIMLAVLGVYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEVPDLKDRAGAAVAGAVETVASVLEAGKNAQLD 304          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A835ZCA8_9STRA (Putative integral membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCA8_9STRA)

HSP 1 Score: 242 bits (617), Expect = 2.610e-72
Identity = 140/308 (45.45%), Postives = 188/308 (61.04%), Query Frame = 1
Query:    1 MTAAMDTVKSWAGLWQFSWRSKGYHKVPTIITIWFWILKVLCTTVGEPIADYLRDD-ALGLPNAFYVTAAIM-------------------LAVLGVYTTGTTFTDEITKPKYLSFPEAWTIIIYFT-CLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEVPDLKDRAGAAVAGA 861
            M AA+DT+ +      FSWRS G  KVP++ITIWFW++K+LCTTVGE  AD+L ++  LGL N  YV +A+                    L V+ + TTGT  TD +T    +   E W  ++ F+  L ++F+AWY  E +LSIH+I THRRE FYWLVV+ TFALGTA GD+I                   A+ LGLG+W+  +++ A IAAIAVAY+AL++NA +AFW TYI++RPLGASLGD L+ P  E  AGLGPGVT+ +FL  I  +V ++ V+ K +      P + D A AA A A
Sbjct:    1 MVAALDTLTA-----TFSWRSSGVPKVPSVITIWFWVIKILCTTVGESCADWLNENLGLGLANTAYVMSAVFVVAFLVQFFATRYIALLYWLVVVLISTTGTLITDNLTDNVGV---EGWVCVVVFSGLLAVSFLAWYLVEGTLSIHSIYTHRREFFYWLVVLFTFALGTAAGDLI-------------------AEKLGLGYWETLLVFVAIIAAIAVAYFALKVNAVLAFWLTYIMSRPLGASLGDLLASPKDEGGAGLGPGVTSAIFLSVILVVVVFLSVTKKDVDGTSAKPVMPDHAAAAEAQA 281          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A285V7I0_9ACTN (Uncharacterized membrane-anchored protein n=1 Tax=Blastococcus aggregatus TaxID=38502 RepID=A0A285V7I0_9ACTN)

HSP 1 Score: 186 bits (473), Expect = 2.180e-51
Identity = 108/277 (38.99%), Postives = 154/277 (55.60%), Query Frame = 1
Query:   73 HKVPTIITIWFWILKVLCTTVGEPIADYLRDD-ALGLPNAFYVTAAIMLAVLG-------------------VYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEVPDLKDRAG 843
            +KVP + TIWFW++K+L TTVGE  ADYL      GL     V  A+ L VLG                   +   GT  TD +T    L  P   T   +   L   F AWY+ E++LSIH++ T RRE FYWL +++TFALGTA GD++                   A+ LG+GFW + +++A  I A+A ++   R NA +AFW  Y++TRPLGASLGD  S+P ++   G+G  +T++VFL AI A+V+Y+ VS +  + P +V +L   +G
Sbjct:   16 NKVPEV-TIWFWVIKILATTVGETAADYLNVTLGFGLTGTTVVVGAVFLVVLGYQFRAPRYVPPLYWATVVLISVVGTLITDNLTDN--LGVPLEVTTAAFAVALAAVFAAWYSVEKTLSIHSVVTRRREAFYWLAILVTFALGTAAGDLV-------------------AERLGVGFWLSALLFAVLIGAVAASHLVFRANAVLAFWIAYVLTRPLGASLGDGFSQPTADGGLGMGTTLTSVVFLAAILAVVSYLAVSKRDQLPPVDVDELAVESG 270          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A1G7USG4_9ACTN (Uncharacterized membrane-anchored protein n=3 Tax=Klenkia TaxID=2183612 RepID=A0A1G7USG4_9ACTN)

HSP 1 Score: 184 bits (466), Expect = 1.910e-50
Identity = 108/268 (40.30%), Postives = 147/268 (54.85%), Query Frame = 1
Query:   73 HKVPTIITIWFWILKVLCTTVGEPIADYLRDD-ALGLPNAFYVTAAIMLAVLG-------------------VYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHE 816
            +KVP + TIWFW++K+L TTVGE  ADYL D    GL N   V  A+ L VLG                   +   GT  TD +T    L  P   T  ++   LGL F  WYA+ER+LSIH+I T RRE FYWL ++ TFALGTA GD+                    A+ LG G+W + +++AA I A+A ++   + NA + FW  Y++TRPLGASLGD  S+   +   GLG  +T+++FL  I A+V Y+ VS +  + P E
Sbjct:   15 NKVPEV-TIWFWVIKILATTVGETAADYLNDTLGFGLTNTTLVIGAVFLVVLGFQFRARRYIAPLYWATVVLISVVGTLITDNLTDN--LGVPLEATTAVFAVALGLTFAGWYASERTLSIHSIVTRRREAFYWLAILFTFALGTAAGDLT-------------------AERLGAGYWLSALLFAALIGAVAASHLVFKANAVLTFWIAYVLTRPLGASLGDGFSQDKVDGGLGLGTTLTSVLFLVTIVAVVTYLAVSKRDQLPPVE 260          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: Q0RL00_FRAAA (Putative integral membrane protein n=6 Tax=Frankiaceae TaxID=74712 RepID=Q0RL00_FRAAA)

HSP 1 Score: 184 bits (466), Expect = 2.780e-50
Identity = 114/276 (41.30%), Postives = 152/276 (55.07%), Query Frame = 1
Query:   55 WRSKGYHKVPTIITIWFWILKVLCTTVGEPIADYLRDD-ALGLPNAFYVTAAIM-------------------LAVLGVYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEVP 822
            W     +KVP + TI+FWI+KVLCTT+GE  AD+L  +  LGL N  YV  A++                   LAV+ +   GT  TD +T    +  P   T  ++   L   F AW+A ER+LSIHTI T RRE FYWL ++ TFALGTA GD++                   A+ L LG+  + +++AAAIAA+A A +AL  NA   FW  Y++TRPLGAS GD LS+P  E   GLG   T ++FL AI  LVAY+ V  +  + P  +P
Sbjct:   21 WGRTTLNKVPQV-TIFFWIIKVLCTTIGETAADFLNSNLGLGLTNTTYVMGALLVVALFFQFRQERYVPWVYWLAVVLISVVGTLITDNLTDNAGV--PLEVTTAVFAVALAATFAAWFAVERTLSIHTILTTRREGFYWLAILFTFALGTAAGDLV-------------------AEKLNLGYGVSVLVFAAAIAAVAAARFALAANAVATFWVAYVLTRPLGASAGDLLSQPRDEGGLGLGTVGTTVIFLVAIVGLVAYLTVRRRDEIAPEGLP 274          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A6B2W7F5_9ACTN (Uncharacterized protein n=5 Tax=Streptomyces TaxID=1883 RepID=A0A6B2W7F5_9ACTN)

HSP 1 Score: 182 bits (462), Expect = 6.650e-50
Identity = 109/265 (41.13%), Postives = 153/265 (57.74%), Query Frame = 1
Query:   73 HKVPTIITIWFWILKVLCTTVGEPIADYLRDDA-LGLPNAFYVTAAIML-------------------AVLGVYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVD 807
            +KVP + TI+FW++KVLCTTVGE  AD+L  +  LGL N  Y+ A +++                   AV+ +   GT  TD +T       P A T I++   L   F+ W+A+E++LSIH+I T RRE FYW  ++ TFALGTA GD+                    A+ LGLG+W + +++ A IA +A+A+  ++LNA VAFW  YI+TRPLGASLGD LS+P  E   GLG   T+ +FL  I+ALVA++  + K   D
Sbjct:    3 NKVPEV-TIYFWVIKVLCTTVGETAADFLNSNLDLGLTNTTYIMAGLLIITLFFQFMAKKYVPAVYWMAVVLISVVGTLVTDNLTDN--FGVPLATTAILFAVALAATFVIWFASEKTLSIHSIVTVRREAFYWAAILFTFALGTAAGDLT-------------------AEQLGLGYWVSTVVFGALIALVALAHTGIKLNAVVAFWIAYILTRPLGASLGDYLSQPDDEGGLGLGTVGTSALFLVTISALVAFLSFTRKDQTD 245          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A4V3J825_9ACTN (Uncharacterized protein n=6 Tax=Streptomyces TaxID=1883 RepID=A0A4V3J825_9ACTN)

HSP 1 Score: 181 bits (459), Expect = 2.560e-49
Identity = 110/270 (40.74%), Postives = 159/270 (58.89%), Query Frame = 1
Query:   70 YHKVPTIITIWFWILKVLCTTVGEPIADYLRDDA-LGLPNAFYVTAAIMLAVL-----------GVYTT--------GTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEV 819
            ++KVP + T++FW++KVLCTTVGE  AD L + A LGL     + +A++  VL           GVY T        GT  +D +T    +  P   T  ++   L + F+AWY +ER+LSIH+I T RRE FYWL V+ TFALGT+ GD++                   A+ +GLG+W + +++A AIAA+AVA +AL  NA  +FW  Y++TRPLGAS+GD LS+P  +   GLG  VT+ +FL  I ALV ++ V+ K + +P  +
Sbjct:   25 WNKVPEV-TVYFWVIKVLCTTVGETAADLLNEKAGLGLTGVSLLMSALLAVVLVVQFRTTAYRPGVYWTAVALISVVGTLVSDNLTDN--MGVPLETTTAVFAVLLTVVFVAWYRSERTLSIHSIDTLRRESFYWLAVLFTFALGTSAGDLV-------------------AERMGLGYWVSAVLFALAIAAVAVARFALGANAVWSFWIAYVLTRPLGASMGDYLSQPTGDGGLGLGTVVTSGLFLAVILALVVFLAVTRKDVTEPERL 272          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A2W6CIF7_9PSEU (Uncharacterized protein n=2 Tax=Pseudonocardiales bacterium TaxID=2201155 RepID=A0A2W6CIF7_9PSEU)

HSP 1 Score: 180 bits (456), Expect = 4.140e-49
Identity = 110/269 (40.89%), Postives = 150/269 (55.76%), Query Frame = 1
Query:   73 HKVPTIITIWFWILKVLCTTVGEPIADYLRDD-ALGLPNAFYVTAAIMLAVL-----------GVY--------TTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDPHEV 819
            +KVP + TI+FW++KVL TTVGE +ADYL     LGL     V AA+++  L           G+Y          GT  TD +T    +S     T +++   L   F AWY +ER+LSIHTI T RRE FYWL ++ TFALGTA GD++                   A+ L LG+W + I++AA IA + +A++  +LNA +AFW  YI+TRPLGASLGD LS+P+     GLG   T+ +FL  I +LV Y+  S K   D   +
Sbjct:    3 NKVPEV-TIYFWVIKVLATTVGETVADYLNTTLGLGLTGTSLVMAALLIVALFFQFRGRRYVPGIYWLAVVLISVVGTLITDNLTDNFGVSLET--TTVVFSVALAATFAAWYRSERTLSIHTIYTTRREGFYWLAILFTFALGTAAGDLV-------------------AERLNLGYWISAIMFAALIAIVTIAHFGFKLNAVLAFWIAYILTRPLGASLGDFLSQPSDNGGVGLGTAATSALFLATILSLVTYLTTSRKDQPDSDNI 249          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: A0A2A2Z953_9ACTN (Uncharacterized protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A2A2Z953_9ACTN)

HSP 1 Score: 180 bits (457), Expect = 6.260e-49
Identity = 108/268 (40.30%), Postives = 157/268 (58.58%), Query Frame = 1
Query:   67 GYHKVPTIITIWFWILKVLCTTVGEPIADYLRDDA-LGLPNAFYVTAAIMLAVL-----------GVY--------TTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVSGKHMVDP 810
            G++KVP I T++FW++KVLCTTVGE  AD L + A LGL     + + ++ AVL           GVY          GT  +D +T    +  P   +  ++   L + F+AWY +E +LSIH++ T RRE FYWL V+ TFALGTA GD++                    + + LG+W A +++A AIAA+AVA++AL L+A  +FW  YI+TRPLGAS+GD LS+P  +   GLG  VT+ +FL  I  LV Y+ V+ + +++P
Sbjct:   31 GWNKVPEI-TVYFWVIKVLCTTVGETAADLLNEKAGLGLTGVSLLMSVLLAAVLVVQFRTSAYRAGVYWLAVALISVVGTLISDNLTDN--MGVPLEASTTVFAIVLAVVFVAWYRSEHTLSIHSVDTTRRESFYWLAVLFTFALGTAAGDLVS-------------------ERMNLGYWLAAVLFALAIAAVAVAHFALGLDAVWSFWIAYILTRPLGASVGDYLSQPTGDGGLGLGTVVTSALFLTVILGLVVYLAVTRRDVIEP 276          
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Match: UPI0019665088 (hypothetical protein n=1 Tax=Streptomyces acididurans TaxID=2784346 RepID=UPI0019665088)

HSP 1 Score: 179 bits (455), Expect = 7.290e-49
Identity = 110/258 (42.64%), Postives = 148/258 (57.36%), Query Frame = 1
Query:   76 KVPTIITIWFWILKVLCTTVGEPIADYLRDDA-LGLPNAF-------------------YVTAAIMLAVLGVYTTGTTFTDEITKPKYLSFPEAWTIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTALGDVIGSSRACRSXXXXXXXXXXXADTLGLGFWQAFIIYAAAIAAIAVAYYALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFLCAIAALVAYIGVS 789
            KVP + T++FW++KVLCTTVGE  ADYL  +  +GL N                     YV A   LAV+ +   GT  TD +T    +  P   T  ++   L L+F AWYA ER+LSIH++ T RRE FYWL ++ TFA GTA GD++                   A+ + LG+W + I++AA IAAI +A+Y  RLNA ++FW  YI+TRPLGASLGD LS+  S+   GLG   T+ +FL  I ALV Y+ +S
Sbjct:   21 KVPEV-TVYFWLIKVLCTTVGETAADYLDTNLNMGLTNTTWVMSVLLVAALVVQFRVRGYVPAVYWLAVVLISVVGTLITDNLTDN--MGVPLTTTTTVFAVALALSFAAWYAVERTLSIHSVRTPRREAFYWLAILFTFAEGTAAGDLV-------------------AERMNLGYWVSAIVFAAVIAAIGLAHYLFRLNAVLSFWLAYILTRPLGASLGDYLSQHKSDGGLGLGTVGTSALFLATILALVVYLTIS 256          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354338 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZR2_9STRA1.060e-199100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCA8_9STRA2.610e-7245.45Putative integral membrane protein n=1 Tax=Tribone... [more]
A0A285V7I0_9ACTN2.180e-5138.99Uncharacterized membrane-anchored protein n=1 Tax=... [more]
A0A1G7USG4_9ACTN1.910e-5040.30Uncharacterized membrane-anchored protein n=3 Tax=... [more]
Q0RL00_FRAAA2.780e-5041.30Putative integral membrane protein n=6 Tax=Frankia... [more]
A0A6B2W7F5_9ACTN6.650e-5041.13Uncharacterized protein n=5 Tax=Streptomyces TaxID... [more]
A0A4V3J825_9ACTN2.560e-4940.74Uncharacterized protein n=6 Tax=Streptomyces TaxID... [more]
A0A2W6CIF7_9PSEU4.140e-4940.89Uncharacterized protein n=2 Tax=Pseudonocardiales ... [more]
A0A2A2Z953_9ACTN6.260e-4940.30Uncharacterized protein n=2 Tax=unclassified Strep... [more]
UPI00196650887.290e-4942.64hypothetical protein n=1 Tax=Streptomyces acididur... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_232contigContig_232:49593..53715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354338|estExt_Genemark1.C_Ctg_2320006
DescriptionRepeat of Unknown Function (DUF347)
COG categoryS
Max annot lvl201174|Actinobacteria
EggNOG OGsCOG4705@1|root,COG4705@2|Bacteria,2HWSK@201174|Actinobacteria,4EUDA@85013|Frankiales
Evalue8.66e-54
Seed ortholog326424.FRAAL3161
Hectar predicted targeting categoryother localisation
TranscriptId354660
TrackFilteredModels1
ProteinId354338
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354338gene_17840Tribonema minus UTEX_B_3156 geneContig_232 49593..53715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354338Trimin1|354338|estExt_Genemark1.C_Ctg_2320006Tribonema minus UTEX_B_3156 polypeptideContig_232 49593..52911 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17840_1exon_17840_1Tribonema minus UTEX_B_3156 exonContig_232 49593..49659 +
exon_17840_2exon_17840_2Tribonema minus UTEX_B_3156 exonContig_232 49842..49891 +
exon_17840_3exon_17840_3Tribonema minus UTEX_B_3156 exonContig_232 50103..50218 +
exon_17840_4exon_17840_4Tribonema minus UTEX_B_3156 exonContig_232 50494..50691 +
exon_17840_5exon_17840_5Tribonema minus UTEX_B_3156 exonContig_232 51246..51286 +
exon_17840_6exon_17840_6Tribonema minus UTEX_B_3156 exonContig_232 51431..51740 +
exon_17840_7exon_17840_7Tribonema minus UTEX_B_3156 exonContig_232 52779..53244 +
exon_17840_8exon_17840_8Tribonema minus UTEX_B_3156 exonContig_232 53287..53715 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17840CDS_17840Tribonema minus UTEX_B_3156 CDSContig_232 49593..49659 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17840UTR3_17840Tribonema minus UTEX_B_3156 three_prime_UTRContig_232 52912..53244 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17840 ID=mRNA_17840|Name=jgi.p|Trimin1|354338|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1677bp|location=Sequence derived from alignment at Contig_232:49593..53715+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGACGGCCGCCATGGACACGGTGAAGTCATGGGCCGGTCTGTGGCAGTT
CTCGTGGCGCAGCAAGGGTTACCACAAGGTGCCCACGATCATCACCATCT
GGTTCTGGATCCTTAAGGTGCTGTGCACGACGGTGGGGGAGCCCATCGCA
GATTACCTCAGGGACGACGCCCTGGGCCTCCCCAACGCCTTCTATGTGAC
GGCGGCCATCATGCTGGCGGTGCTGGGTGTTTACACGACCGGCACCACGT
TCACCGACGAGATCACCAAGCCCAAGTACCTGTCCTTCCCCGAAGCGTGG
ACCATCATCATCTACTTCACGTGCCTAGGACTGGCCTTCATCGCCTGGTA
CGCCGCGGAGAGGAGCCTCTCAATACACACCATCACGACGCACCGCCGCG
AGCTCTTCTACTGGCTGGTCGTCATCATCACCTTCGCGCTCGGCACCGCG
CTCGGCGACGTCATCGGCAGTTCGCGCGCATGCCGCAGCTTCGCGCTCGG
CACCGCGCTCGGCGACGTCATCGCCGACACGCTCGGCCTCGGCTTCTGGC
AGGCGTTCATCATCTACGCGGCGGCGATCGCCGCGATCGCCGTCGCGTAC
TACGCGCTGCGCCTCAACGCGACGGTCGCGTTCTGGGCGACGTACATCGT
GACGCGCCCCCTGGGGGCTTCCCTGGGGGATGCGCTCAGCAAGCCCGCCA
GCGAGGACGCCGCGGGGCTGGGCCCCGGCGTTACCGCGATCGTCTTCCTG
TGCGCCATCGCCGCGCTGGTGGCGTACATCGGCGTCTCCGGCAAGCACAT
GGTGGACCCGCACGAGGTGCCGGACCTGAAAGACCGCGCAGGCGCCGCAG
TGGCGGGCGCCGTAGAGACCGTGGCCAGCGTACTCGAAGCCGGCAAGAAT
GCGCAGCTCGACTGAGCGTCTTACTTGAAGCCGGCAAAGCCGCACAGCTC
GACTGAGAGTCAGCGCTCTGCGTACGCCCTGGAACCGCGCGCGCGTGACC
GCCCCTTGCGGGCGCCGCGGTCGTTTGTTTCTTCCCCCGAAGTGCCCCCC
TCGCTCTCCCCTTCCGCAACGGTAACGCTCATCCCCTTTTTCCCCGAAGC
ATCACGTAGCAGTGCTGTGCTTCAGTCCCCGTACACGCGTGGAGCGGTTC
GACGCACCGCGTCGCGCCGGCGCGCGAAACCGCCGTTTTCCCTCCTTCAA
TCCCTCCTGCGTCGTGCAGCTGCACATGGGCTCGGTCGTCGATTTCCCCC
CCCTTCCCCACGTCGGTTTGAATCACATCAGCAGTAGTGCGCCTTCTTGC
TGGCGCCATCACCAATCCTCACATACTTGGCCTGTGACACAGTCATCGTC
GCGTCCCCCTCCCGGCCCCAGAAACACGCAGCCGCCATCGGCGGCAGTGC
ACTCGACACGTGCGGCACGCTCGCGCGCAGCGCTCGCCCCGGGGCCTCAT
TGCGCGCACCGAGAGCATTTTGTTTTACGCACGCGGCCTCTCGTGCGGAG
CGCTGATGAATGTGCTCGTGCGGCGCGCTCGCTTGGGAGGCGCTCATGAA
GGACTGCGCGGGTACGCAGTCGGGAGCGTCACCACCGCGGCATGCCAAAC
CTCAACTTCAAGCACACACTTTGTGGGTGTGCGCACAGTTCGACTGCAAG
CACTTTGAATGCATCATATGCCTTTCA
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protein sequence of jgi.p|Trimin1|354338

>Trimin1|354338|estExt_Genemark1.C_Ctg_2320006 ID=Trimin1|354338|estExt_Genemark1.C_Ctg_2320006|Name=jgi.p|Trimin1|354338|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=305bp
MTAAMDTVKSWAGLWQFSWRSKGYHKVPTIITIWFWILKVLCTTVGEPIA
DYLRDDALGLPNAFYVTAAIMLAVLGVYTTGTTFTDEITKPKYLSFPEAW
TIIIYFTCLGLAFIAWYAAERSLSIHTITTHRRELFYWLVVIITFALGTA
LGDVIGSSRACRSFALGTALGDVIADTLGLGFWQAFIIYAAAIAAIAVAY
YALRLNATVAFWATYIVTRPLGASLGDALSKPASEDAAGLGPGVTAIVFL
CAIAALVAYIGVSGKHMVDPHEVPDLKDRAGAAVAGAVETVASVLEAGKN
AQLD*
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mRNA from alignment at Contig_232:49593..53715+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17840 ID=mRNA_17840|Name=jgi.p|Trimin1|354338|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4123bp|location=Sequence derived from alignment at Contig_232:49593..53715+ (Tribonema minus UTEX_B_3156 )
ATGACGGCCGCCATGGACACGGTGAAGTCATGGGCCGGTCTGTGGCAGTT CTCGTGGCGCAGCAAGGGTGAGTCAGCCGGGTGGCTGCTGGGCTTTGACC GAGAAATAGCATGTCATGCACGCCTCCGACCACTGCCACTCGTGCACGCG TGTAGCTTGATGTCATCATGGTGTTCGCAGATGGCCCCCGATCGGGAGCA AACCACACAGCCACATACCCCGTCGCTGATGAGCCATTTGCGATCTCAGG TTACCACAAGGTGCCCACGATCATCACCATCTGGTTCTGGATCCTTAAGG TACTCCCTTCCCAGCCTCCCACCTGTGCACCTTGCCGCAAGACCGCAACG ACAAGTGTGTCCAGATGTAGATGATGTGATTGACCTGCTACTGATTGCCG CTTTGATGATGCTGCTGCTGTCGTTGCTGCTGCTGCTGCTGCTGCTGCTG CTGCTGCTGCTGCTGCCGCCGCCGCCGCGCTGCTGCTGCTGCCGCCGCTG CCGCCGCCAGGTGCTGTGCACGACGGTGGGGGAGCCCATCGCAGATTACC TCAGGGACGACGCCCTGGGCCTCCCCAACGCCTTCTATGTGACGGCGGCC ATCATGCTGGCGGTGCTGGGTGTTTAGTTCTTCTGCGTGCGCTACATTGC GCCCCTCTACTGGCTGGTCGTCATCCTCATAGCGTGAGTCGATGGAGCTA AATGCCCGTCCCTCCCGGCCCCCCATCAATGCAGTGCTTGGCGCATGTTG TCCTCAGCAGAAAGTCAGGAAGGAAAGTGCCACGCTCGCATAAGTGCAGC TTTGAGCGGCAGGTGTGTTTGCCGCCAAAGAAACGCGCACCTGCACATTT CACCGACACCACAAGCGATGCATTTGTGACTGTTCATAACTGTCGCCGCA GCACGACCGGCACCACGTTCACCGACGAGATCACCAAGCCCAAGTACCTG TCCTTCCCCGAAGCGTGGACCATCATCATCTACTTCACGTGCCTAGGACT GGCCTTCATCGCCTGGTACGCCGCGGAGAGGAGCCTCTCAATACACACCA TCACGACGCACCGCCGCGAGCTCTTCTACTGGCTGGTCGTCATCATCACG TGAGTGCCGCCGCTGCAGTGCTCCGCGCAACCGACGAGCCGTTTCCAGCT TTTTACAAGGTGTGTTCCAAGCTTCGGTTACGCCAAACTTCAACTGCGGT GCAGCATGCTAACACTGCAGTGCTCAGCACAATGGCGACGTTCTCAGCGT TTACAATTTGTATTCCAAGCTTCGGTTACTGACACCAAACCTCAACTGTT TGGGCCCAGCAGGCGCCGTCTGCTGGGATTGTCATGCATGTGTTATTTAG AGTGCTGAATGAAGCTGGCAAGTGCTGGTCAGTTTGCGTATGTGATGGCA CTGCAGGCGCATGCAGTTGCCGAGTCTGTGCGCATCCGTGCGCATTCATG CGTTGGGGTGTTCAACTTGAAGTTTGTGCGATCGCGCACATCGCTGGTAC AAACAGACTCTCAAATTGCCTGCAACGGCGGCGCCGACACCCGGATGCGC GCAGCGCCAGAGCACACACCTGCACAGCGCCAGAGCCACAGCTGCTGCTG CCGCCGCCGCCGCCGCCGCCGCCCCCGCCGCCGCTGCCCCGCTGTGTCCG TAGCTTCGCGCTCGGCACCGCGCTCGGCGACGTCATCGGCAGTTGTACGC ACAGACAATCAGGTGCTTGCGATTGCGAAGAGTGACGCCAGTATGAACAC AGCACGAGTGCATGATCCTCCATGCATCGCTGATGCTCACGCCGCTGCCG CCGCCGCTGCCGCCGCTGCCGCCGCCGCCGCCTCCGAGCGCGCGCATGCC GCAGCTTCGCGCTCGGCACCGCGCTCGGCGACGTCATCGCCGACACGCTC GGCCTCGGCTTCTGGCAGGCGTTCATCATCTACGCGGCGGCGATCGCCGC GATCGCCGTCGCGTACTACGCGCTGCGCCTCAACGCGACGGTCGCGTTCT GGGCGACGTACATCGTGACGCGCCCCCTGGGGGCTTCCCTGGGGGATGCG CTCAGCAAGCCCGCCAGCGAGGACGCCGCGGGGCTGGGCCCCGGCGTTAC CGCGATCGTCTTCCTGTGCGCCATCGCCGCGCTGGTGGCGTACATCGGGT GCGTGCGTCGTCACGCATTCGCATAAGTTGAAGTGCACAGGAAGTTGATC ACGTTGGGTTGCGTCGCCGCACCTTTTGAGGAAGTTGAAGAATGCAAGAT GCTGATGCTACATTGTTGGGTCCTCCTGTGTGCCATCGCCGTGCTGGTGG CGTACATCGGGTGCGTGTGTCGCCAAGCTCTCGCAGAAATTAAAGTACAC AAGAAGTAGTGATTACAGAGGGGATGCGACGCTTCACCTTTTGAGGAAGT TGAAGTACGTGAGAAGTTGCTGATGCGCCGTCGGTGATCGCTGTTGACGC GCGAATTGAACACTCTGAGCGGCGTCTTTGTGTGACGACAAGTTGAACTC CCCGGGGCGGCGTTGAACGATCACATGGGCTTCTGTGCACGCACTCAGCG AACGCGGCAGCTGCAGTGCGTGTTTTTTCTCATCGCTAACCCTAGCGGCT TGTACCTGACTGCGCCATCCAGACCGAGGCTTCAACTTGCGTCAGGCGTG TCGTCGGTTATGTGAGACAGTGGTATGGGCCACCGTGCGCCGCTTCCATG CATGCCAGCGCCATGTAGCGCCTGGCAGCCTCAGTAGGTTCAACCACAAA TCGCAGCCCCGGGCCGGACTGCAGCAGGCGCACAGCACATGTTGGTGTCC TCAGGTCCTCTGCTTTACAACTTCAACATTGCGTATCCTCTCTTCAACAT GTTGCGCTGCTGCAGCGTGGCGTCCACAACGACTATTAGCATGCTGTGCT GCGGGCCTGATCAGTCGTGTATCCTACAGAAGCACCTGGCTTGCCGGACA CTGTCGCTCACACTAGACACCAGCCGCCGATCGACTGCAGAGTCAGCGCA GTGCCACGCATCAGACACTATGTACAGGGCATGAAGCTAGCGTTGCGGTG ACGTCAACACCACCAGTGCTCAGCAGACCAGCGCGCGCCACACGAGACGC GCACGATGCCTCATCCTAAGTAACCCTGGAGTAGCCCTGACCGCTTCGCC CCTCCTCCCCCCCCCCCTTCCCCCACCCCTGCGCAGCGTCTCCGGCAAGC ACATGGTGGACCCGCACGAGGTGCCGGACCTGAAAGACCGCGCAGGCGCC GCAGTGGCGGGCGCCGTAGAGACCGTGGCCAGCGTACTCGAAGCCGGCAA GAATGCGCAGCTCGACTGAGCGTCTTACTTGAAGCCGGCAAAGCCGCACA GCTCGACTGAGAGTCAGCGCTCTGCGTACGCCCTGGAACCGCGCGCGCGT GACCGCCCCTTGCGGGCGCCGCGGTCGTTTGTTTCTTCCCCCGAAGTGCC CCCCTCGCTCTCCCCTTCCGCAACGGTAACGCTCATCCCCTTTTTCCCCG AAGCATCACGTAGCAGTGCTGTGCTTCAGTCCCCGTACACGCGTGGAGCG GTTCGACGCACCGCGTCGCGCCGGCGCGCGAAACCGCCGTTTTCCCTCCT TCAATCCCTCCTGCGTCGTGCAGCTGCACATGGGCTCGGTCGTCGATTTC CCCTCCCATATCTTGCACGGGTGACCCTGTGCCCCCCCCCCCCCCCCCCT TCCCCACGTCGGTTTGAATCACATCAGCAGTAGTGCGCCTTCTTGCTGGC GCCATCACCAATCCTCACATACTTGGCCTGTGACACAGTCATCGTCGCGT CCCCCTCCCGGCCCCAGAAACACGCAGCCGCCATCGGCGGCAGTGCACTC GACACGTGCGGCACGCTCGCGCGCAGCGCTCGCCCCGGGGCCTCATTGCG CGCACCGAGAGCATTTTGTTTTACGCACGCGGCCTCTCGTGCGGAGCGCT GATGAATGTGCTCGTGCGGCGCGCTCGCTTGGGAGGCGCTCATGAAGGAC TGCGCGGGTACGCAGTCGGGAGCGTCACCACCGCGGCATGCCAAACCTCA ACTTCAAGCACACACTTTGTGGGTGTGCGCACAGTTCGACTGCAAGCACT TTGAATGCATCATATGCCTTTCA
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Coding sequence (CDS) from alignment at Contig_232:49593..53715+

>mRNA_17840 ID=mRNA_17840|Name=jgi.p|Trimin1|354338|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=915bp|location=Sequence derived from alignment at Contig_232:49593..53715+ (Tribonema minus UTEX_B_3156 )
ATGACGGCCGCCATGGACACGGTGAAGTCATGGGCCGGTCTGTGGCAGTT
CTCGTGGCGCAGCAAGGGTTACCACAAGGTGCCCACGATCATCACCATCT
GGTTCTGGATCCTTAAGGTGCTGTGCACGACGGTGGGGGAGCCCATCGCA
GATTACCTCAGGGACGACGCCCTGGGCCTCCCCAACGCCTTCTATGTGAC
GGCGGCCATCATGCTGGCGGTGCTGGGTGTTTACACGACCGGCACCACGT
TCACCGACGAGATCACCAAGCCCAAGTACCTGTCCTTCCCCGAAGCGTGG
ACCATCATCATCTACTTCACGTGCCTAGGACTGGCCTTCATCGCCTGGTA
CGCCGCGGAGAGGAGCCTCTCAATACACACCATCACGACGCACCGCCGCG
AGCTCTTCTACTGGCTGGTCGTCATCATCACCTTCGCGCTCGGCACCGCG
CTCGGCGACGTCATCGGCAGTTCGCGCGCATGCCGCAGCTTCGCGCTCGG
CACCGCGCTCGGCGACGTCATCGCCGACACGCTCGGCCTCGGCTTCTGGC
AGGCGTTCATCATCTACGCGGCGGCGATCGCCGCGATCGCCGTCGCGTAC
TACGCGCTGCGCCTCAACGCGACGGTCGCGTTCTGGGCGACGTACATCGT
GACGCGCCCCCTGGGGGCTTCCCTGGGGGATGCGCTCAGCAAGCCCGCCA
GCGAGGACGCCGCGGGGCTGGGCCCCGGCGTTACCGCGATCGTCTTCCTG
TGCGCCATCGCCGCGCTGGTGGCGTACATCGGCGTCTCCGGCAAGCACAT
GGTGGACCCGCACGAGGTGCCGGACCTGAAAGACCGCGCAGGCGCCGCAG
TGGCGGGCGCCGTAGAGACCGTGGCCAGCGTACTCGAAGCCGGCAAGAAT
GCGCAGCTCGACTGA
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