mRNA_18116 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354325
Unique NamemRNA_18116
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A835Z061_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z061_9STRA)

HSP 1 Score: 733 bits (1893), Expect = 5.440e-264
Identity = 368/368 (100.00%), Postives = 368/368 (100.00%), Query Frame = 1
Query:    1 MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVSHHVGPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQA 1104
            MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVSHHVGPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQA
Sbjct:    1 MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVSHHVGPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQA 368          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A835Z3D2_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3D2_9STRA)

HSP 1 Score: 234 bits (596), Expect = 4.640e-68
Identity = 165/394 (41.88%), Postives = 214/394 (54.31%), Query Frame = 1
Query:    1 MNRFAAEGFVFSSFESFA--PLPTR--SHDKGRARRAAAASGDRPRDGDSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPG-----------TRRGLTVFGQDDRVEITDPNVT-PYMAIGQL--TFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVF--DQETNDW--VDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAV--TLIDGNAQVMGVVSHHVGPASA---LSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQ 1101
            M+RF  EGFV S+FESFA  PLP    S+  G  R+    + D      S   +     AVR+T EG+VY+TT LR  P L++P    AR+       S G             + R L +FG D R EITDP    PY AIGQL   ++  D       E ++C+GTLVGTDAVLTA HCV+  D +T ++  + A  F P+     L G   P+G F ++Y+T +S W+D   +D F +D+AVLRL  +  TG SAFDT+GY MGV  D C +P +  + GYPG     M+ SG CSD   +Y CG     TNCDWV G+SG         D      GVVSHH  P  A    ST SS AW   D YN+LTMM A K+ D+Y+W+T P+ +
Sbjct:    1 MDRFKNEGFVLSAFESFATKPLPRALPSNTTGNKRKMLNNNFDNNFKAASPPRS-----AVRVTREGYVYRTTPLRTPPALNVPDFVPARSLQHHNDGSGGVXXXXXXXXXXSRSLRELLIFGTDSRTEITDPAAQEPYSAIGQLISAYNATD------DEAFLCSGTLVGTDAVLTAGHCVYGLDADTGEYAFMSAAIFNPS-----LIGDDAPFGTFPILYQTTFSEWTDSGAED-FNFDMAVLRLDVAPDTGRSAFDTIGYHMGVSKDACNMP-AVKLSGYPGDKNSTMWASGTCSDI--NYSCGGGTAITNCDWVEGDSGSALFGDAGADTGTLAYGVVSHHTVPGGAGLTASTVSSGAW--PDVYNSLTMMTADKYDDVYSWITSPLAE 372          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A836CCN4_9STRA (Peptidase S1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCN4_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.570e-39
Identity = 123/328 (37.50%), Postives = 161/328 (49.09%), Query Frame = 1
Query:    1 MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDG-DSSTLNDGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGA---ASAGPG----------------------------------TRRGLTVFGQDDRVEITDPNVT-PYMAIGQLTFD--VADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGD 861
            M+RF AEGF F+  E F      +H+  R    A + G R R   D+S L+     A+RIT EGHVY++T  R  P      +   RAAG +     A    G                                    R L +FG D R +I DP    PY AIG L  D    D          +C+GTLVGTDAVLTAAHCV+D  TN +   TAF+PA           P+G F V+Y T ++AW D   +D F YD+AV+R+A S++TG SA D+VGY MG+  + C +P +  + GYPG   G ++ SG CSD +  Y CGD
Sbjct:    1 MDRFKAEGFFFTGVEHFG-----THNGSRDAPTANSDGARHRQRRDASELSSA---AIRITREGHVYRSTDQRLVPAAGY--APFLRAAGRADVMTHAHTSNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSNNRDLLIFGTDTRTKIDDPAAQEPYAAIGLLLSDYNTTDDVVN------LCSGTLVGTDAVLTAAHCVYD--TNMY---TAFFPAAK-----NYTSPFGEFLVLYCTTFAAWVDSGAED-FEYDMAVVRIANSSTTGLSALDSVGYSMGIARNACDMP-AVQLAGYPGDKNGTLWSSGVCSDVE--YDCGD 298          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A836CF25_9STRA (Trypsin-like cysteine/serine peptidase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CF25_9STRA)

HSP 1 Score: 150 bits (380), Expect = 9.190e-37
Identity = 108/287 (37.63%), Postives = 147/287 (51.22%), Query Frame = 1
Query:  280 ASAGPGTRRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARS-----LDALGGTVDPYGGFGVVYRTVYSAWSD--GSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLI--DGNAQVMGVVSHHV----GPASALSTASSSAWLNGDAYNTLTMMNAAKFADIYTWMTEPVPQ 1101
            A+ G   RR  +      R  +   N TPY A+G L  ++           Y+C+G LVG DAVLTA HCV+D      VD T+  PA       + AL G   PYG F V+Y T +S W D  G+ ++ + YD+AVLRL  S ++G +A     Y+MG+ G  C LP S +VVGYPG     M+ S  C +    Y+CG  +  T CDW  G+SG PA      D    + G+VSHH+       + +ST SS+ +   +  N LTMM   KF  +Y W T P+ Q
Sbjct:  126 AADGSAHRRLSSSSSSGTRAVVKPYNKTPYAAVGLLDAELDTKG----NPEYLCSGALVGEDAVLTAGHCVYD------VDPTSGKPAAIKVGLFVPALAGQTAPYGLFPVLYATSFSQWLDSVGTDNENYAYDMAVLRLDVSTTSGKNA-----YYMGIDGQRCPLP-SLSVVGYPGDKTQTMWASNKCQNVD--YKCGTGIATTTCDWTTGDSGAPAWAFAGKDYGNLIYGIVSHHIDVYTSQGATVSTVSSAMY--PEVTNDLTMMTRDKFEWVYYWATAPLKQ 392          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A835YTS9_9STRA (Serine protease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTS9_9STRA)

HSP 1 Score: 139 bits (350), Expect = 3.650e-32
Identity = 94/210 (44.76%), Postives = 114/210 (54.29%), Query Frame = 1
Query:  283 SAGPGTRRGLTVFGQDDRVEITDPNVT-PYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDP-YGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSG 906
            +A P T R L VFG DDR  I +P    PY AIG L  D            + C+GTLVG DAVLTA HCV D      VDA          A GG+  P +G F V+Y+T ++ W+D    D   YD+AVL+L  S++TG SAFDT GY MGV  D C +P     VGYP   G  M+ SG C D    Y CGD+   +NCD V G+SG
Sbjct:  213 TAPPRTLRELLVFGTDDRTRIENPAAAEPYSAIGLLQSDNDTMP----DSVFRCSGTLVGEDAVLTAGHCVHD------VDA----------ATGGSAPPPFGSFPVLYQTSFARWTDAGDWD---YDVAVLKLGVSSTTGLSAFDTTGYHMGVSKDTCDMPP-VRDVGYPADKGFTMWGSGICKDID--YTCGDESAASNCDVVVGDSG 396          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: UPI00165CFDD9 (serine protease n=1 Tax=Aquibium microcysteis TaxID=675281 RepID=UPI00165CFDD9)

HSP 1 Score: 89.7 bits (221), Expect = 9.500e-16
Identity = 66/167 (39.52%), Postives = 85/167 (50.90%), Query Frame = 1
Query:  316 VFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVD-PYGGFGVV-------YRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPG 792
            VFG+DDR++ITD    P+  IGQ+       +     E  +C+GTL+G  AV+TAAHC++  E   W+    FYP      L G  D PYGGFG V       Y T Y  +  GSV    P+D+AVL L   A       DTVG+ MG      A   +  +VGYPG
Sbjct:  133 VFGEDDRIQITDTRKYPFNTIGQIW------SKNSKGEWSICSGTLIGKSAVITAAHCLYSHEDGGWLSDYEFYPG-----LNGQNDAPYGGFGFVDAYILEGYITNYKGYY-GSV---VPWDLAVLILDKPAG------DTVGW-MGYATYDPAYAFNANIVGYPG 277          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A8J4GJZ5_9CHLO (Kazal-like domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GJZ5_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 1.680e-15
Identity = 78/247 (31.58%), Postives = 113/247 (45.75%), Query Frame = 1
Query:  301 RRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDS--GACSDAQG---HYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVS---HHVGPASALSTASSSAWLN 1017
            RR L +F  DDR++       P+ A+GQ+  ++ D +       YVC+GTLVG D VLTA HCVF +    +  A  F P+R  +  G  V+P+G     Y T+Y  +S  S  DP   DIAV+ L+    + A        +MGV  + C+    +A V Y     G   D   G+C   Q       C D  L   CD   G SG P   +     + MG      H++     L+  S+S+++N
Sbjct:  366 RRSLGIFDTDDRIDCPRTPTYPFTAVGQI--NIRDTSGN-----YVCSGTLVGPDVVLTAGHCVFSRAGQAFYKALDFAPSRYRNLDGQVVNPFGVILWTYVTLYQGYSSLSTPDPNIEDIAVINLSQRIGSQAG-------WMGVF-EPCS---PYAPVRYVALTAGYPSDQLPGSCKTTQCVVLQEPCTDGYLYHKCDTASGQSGSPMYMMAMTAGRKMGPYIRGVHNIEWVQELANGSTSSYIN 594          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A429YY04_9HYPH (Serine protease n=2 Tax=Aquibium carbonis TaxID=2495581 RepID=A0A429YY04_9HYPH)

HSP 1 Score: 89.0 bits (219), Expect = 2.050e-15
Identity = 65/167 (38.92%), Postives = 86/167 (51.50%), Query Frame = 1
Query:  316 VFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVD-PYGGFGVV-------YRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPG 792
            VFG+DDRV+ITD    P+  IGQ+       +     E  +C+GT++G  AVLTAAHC++  +   W+    FYP      L G  D PYGGFG V       Y T Y  +  GSV    P+D+AVL L   A       +TVG+ MG      A P +  ++GYPG
Sbjct:  150 VFGEDDRVQITDTRKYPFNTIGQIW------SKNSKGEWSICSGTMIGKSAVLTAAHCLYSHDDGGWLADYEFYPG-----LNGQNDAPYGGFGFVDAYILEGYITNYQGFY-GSV---VPWDLAVLILDKPAG------ETVGW-MGYATYDPAYPFTANIIGYPG 294          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: A0A8J4BDG3_9CHLO (Kazal-like domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4BDG3_9CHLO)

HSP 1 Score: 88.6 bits (218), Expect = 9.080e-15
Identity = 74/246 (30.08%), Postives = 111/246 (45.12%), Query Frame = 1
Query:  301 RRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCA--LPESFAVV--GYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGVVS---HHVGPASALSTASSSAWLN 1017
            RR L +F  DDR++       P+ A+GQ+  ++ D +       YVC+GTLVG D VLTA HCVF +    +     F P+R  +  G  V+P+G     Y T+Y  +S  S  DP   DIAV+ L+    + A        +MG+  + C+   P  +  +  GYP         +  C   Q    C D  L   CD   G SG P   +     + MG      H++     L+  S+S+++N
Sbjct:  364 RRSLGIFDTDDRIDCPRTPTYPFTAVGQI--NIRDTSGN-----YVCSGTLVGPDVVLTAGHCVFSRVGQAFYKELDFAPSRYRNLDGQVVNPFGVILWTYVTLYQGYSSLSTPDPNIEDIAVINLSQRIGSQAG-------WMGIF-EPCSPYAPVRYVALTAGYPSDQSPGSCKTTQCVVLQ--EPCTDGYLYHKCDTASGQSGSPMYMMAMTAGRKMGPYIRGVHNIEWVQELANGSTSSYIN 592          
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Match: UPI0015C616F9 (trypsin-like serine protease n=1 Tax=Leptolyngbya ohadii TaxID=1962290 RepID=UPI0015C616F9)

HSP 1 Score: 80.5 bits (197), Expect = 5.500e-13
Identity = 70/215 (32.56%), Postives = 96/215 (44.65%), Query Frame = 1
Query:  328 DDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGTLVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVVYRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDVCALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCG------DDMLDTNCDWVGGNSGGPAVTLIDGNAQVMGV 954
            DDRV +T  +  P+ AIG++ F   D    G    Y+CTGTLV  D VLT AHCV + +T        F P    + + G +   GG       +         + P P D A L+L          + T+G+    L  +   PE F +VGY G    D   S   + A  H  C       DD+L  NCD  GG+SGGP + +IDG   ++ V
Sbjct:   69 DDRVPVTSRSY-PWSAIGRVEFQ--DENGDG----YICTGTLVKPDIVLTNAHCVVNPDTGRLFQNIRFAP----NLIDGRLKDEGGRANAIDLLAGTDFRDRNEPPHPDDWAFLQLDKPLG---EKYGTIGWQALPLPMLIENPEQFIMVGYSG----DFPASNPGATAGAHEGCSILGSVNDDVLRHNCDTEGGSSGGPILAVIDGEYTIVAV 265          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354325 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z061_9STRA5.440e-264100.00Trypsin-like cysteine/serine peptidase domain-cont... [more]
A0A835Z3D2_9STRA4.640e-6841.88Trypsin-like cysteine/serine peptidase domain-cont... [more]
A0A836CCN4_9STRA1.570e-3937.50Peptidase S1 domain-containing protein n=1 Tax=Tri... [more]
A0A836CF25_9STRA9.190e-3737.63Trypsin-like cysteine/serine peptidase domain-cont... [more]
A0A835YTS9_9STRA3.650e-3244.76Serine protease n=1 Tax=Tribonema minus TaxID=3033... [more]
UPI00165CFDD99.500e-1639.52serine protease n=1 Tax=Aquibium microcysteis TaxI... [more]
A0A8J4GJZ5_9CHLO1.680e-1531.58Kazal-like domain-containing protein n=1 Tax=Volvo... [more]
A0A429YY04_9HYPH2.050e-1538.92Serine protease n=2 Tax=Aquibium carbonis TaxID=24... [more]
A0A8J4BDG3_9CHLO9.080e-1530.08Kazal-like domain-containing protein n=1 Tax=Volvo... [more]
UPI0015C616F95.500e-1332.56trypsin-like serine protease n=1 Tax=Leptolyngbya ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_231contigContig_231:41988..44107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354325|estExt_Genemark1.C_Ctg_2310004
BRITEko00000,ko00001,ko01000,ko01002
KEGG Pathwayko02024,map02024
KEGG koko:K01318
EC3.4.21.19
GOsGO:0005575,GO:0005576
DescriptionTrypsin
COG categoryE
Max annot lvl91061|Bacilli
EggNOG OGsCOG3591@1|root,COG3591@2|Bacteria,1VH4B@1239|Firmicutes,4IQ0J@91061|Bacilli,27CGG@186824|Thermoactinomycetaceae
Evalue2.9e-12
Seed ortholog1329516.JPST01000019_gene2665
Hectar predicted targeting categoryother localisation
TranscriptId354647
TrackFilteredModels1
ProteinId354325
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354325gene_18116Tribonema minus UTEX_B_3156 geneContig_231 41988..44107 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_18116_1exon_18116_1Tribonema minus UTEX_B_3156 exonContig_231 41988..42827 +
exon_18116_2exon_18116_2Tribonema minus UTEX_B_3156 exonContig_231 43259..44107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_18116CDS_18116Tribonema minus UTEX_B_3156 CDSContig_231 41988..42827 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_18116UTR3_18116Tribonema minus UTEX_B_3156 three_prime_UTRContig_231 43526..44107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354325Trimin1|354325|estExt_Genemark1.C_Ctg_2310004Tribonema minus UTEX_B_3156 polypeptideContig_231 41988..43525 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_18116 ID=mRNA_18116|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1689bp|location=Sequence derived from alignment at Contig_231:41988..44107+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCGCTTCGCAGCAGAGGGGTTTGTCTTCTCGAGCTTTGAATCCTT
CGCCCCTCTGCCGACTCGGAGCCATGATAAAGGCCGTGCGCGCCGTGCAG
CAGCGGCGAGCGGCGACAGGCCGCGCGACGGCGACTCCAGCACACTCAAT
GACGGCCGAATGCGCGCTGTGCGCATCACCGCGGAGGGCCACGTGTACAA
GACCACATCGCTGCGCGCCGCGCCTGTCCTCGACATCCCGGCATCTACGC
TGGCCCGCGCTGCTGGCAGCAGCGGCGCCGCCAGCGCCGGACCCGGCACG
CGACGTGGCCTGACCGTCTTCGGCCAGGACGACCGCGTCGAGATCACGGA
CCCGAACGTCACGCCCTACATGGCCATAGGGCAGCTGACGTTCGACGTCG
CGGACCCCGCGGCGGGCGGCGCGCAGGAGACGTACGTGTGCACGGGCACG
CTCGTGGGGACGGACGCCGTGCTCACGGCCGCGCACTGCGTCTTCGACCA
GGAGACCAACGACTGGGTGGACGCGACGGCCTTCTACCCCGCGCGCAGCC
TCGACGCGCTCGGCGGCACCGTGGACCCGTACGGCGGCTTCGGCGTCGTC
TACCGCACCGTCTACAGCGCGTGGAGCGACGGAAGCGTGGACGACCCGTT
CCCCTATGACATTGCGGTGCTGCGCCTGGCGCCAAGCGCGAGCACGGGCG
CGAGCGCGTTCGACACCGTGGGGTACTTCATGGGCGTGCTGGGGGACGTC
TGCGCGCTGCCTGAGAGCTTCGCGGTCGTCGGCTACCCCGGCAGCGGGGG
CGGCGACATGTTCGACTCGGGCGCGTGCAGTGACGCGCAGGGGCACTACC
AGTGCGGCGACGACATGCTGGACACCAACTGCGACTGGGTCGGCGGCAAC
AGCGGCGGTCCCGCCGTCACTCTCATCGACGGCAACGCACAGGTGATGGG
CGTCGTCAGCCACCACGTTGGGCCGGCTTCGGCGCTGAGCACTGCCTCCT
CATCCGCATGGCTCAACGGCGACGCGTACAACACGCTGACGATGATGAAC
GCGGCCAAATTTGCGGACATCTACACGTGGATGACGGAGCCCGTGCCGCA
GGCCTGAGGCCGCGCAGTGGCAGCGCTCAGGGGCACTGGCATGCACTGCG
CTTGACAGAAGCGGCGCGGCAGCGGCAGCGCGCTCTGCTGAAGGCTGCAG
CACACCCCCGCTGAAATTGCGCATGCGTGTACACTAGAGCAACACATGAT
GTGTATGTAAGGTGCGGTGCGCGACGAGCGCTGCTGCATTCTGCGCAGCA
ACAGTCGCGCGCCTAGATGATCAAAGCTTCAAGTTGAGGTTTCCCCAGCA
AAGTCCAGTGCTGAGCGGCCCAGGCTTCAAGTTGCGGCGTAGAGTGAGCG
TGTGTGTGTTTCCTCATGAGTGCAGCACAATCATTGACAATCAGCCAGCC
CCCTGTTTGTGGCTCAGCTGTCGACAGTCATGGCACTGTTTGATGTTGTC
AGGCTACTACTTAGGTTGTTGAGGGAGTAAATGAGGTGCAGGTCGGGCAT
CTTAAGCAGTTGTTTAGCGTATTGCAAACAACGAGTGCGTGTGGTGTTGC
GATCAATGTAGCCGTGTGTACATACTGTAATACCCACCAGATGGCCCCTT
GGGGCCCCTTCTCTACAAAATGGCAAAAATGATTTACTG
back to top

protein sequence of jgi.p|Trimin1|354325

>Trimin1|354325|estExt_Genemark1.C_Ctg_2310004 ID=Trimin1|354325|estExt_Genemark1.C_Ctg_2310004|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=369bp
MNRFAAEGFVFSSFESFAPLPTRSHDKGRARRAAAASGDRPRDGDSSTLN
DGRMRAVRITAEGHVYKTTSLRAAPVLDIPASTLARAAGSSGAASAGPGT
RRGLTVFGQDDRVEITDPNVTPYMAIGQLTFDVADPAAGGAQETYVCTGT
LVGTDAVLTAAHCVFDQETNDWVDATAFYPARSLDALGGTVDPYGGFGVV
YRTVYSAWSDGSVDDPFPYDIAVLRLAPSASTGASAFDTVGYFMGVLGDV
CALPESFAVVGYPGSGGGDMFDSGACSDAQGHYQCGDDMLDTNCDWVGGN
SGGPAVTLIDGNAQVMGVVSHHVGPASALSTASSSAWLNGDAYNTLTMMN
AAKFADIYTWMTEPVPQA*
back to top

mRNA from alignment at Contig_231:41988..44107+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_18116 ID=mRNA_18116|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2120bp|location=Sequence derived from alignment at Contig_231:41988..44107+ (Tribonema minus UTEX_B_3156 )
ATGAACCGCTTCGCAGCAGAGGGGTTTGTCTTCTCGAGCTTTGAATCCTT CGCCCCTCTGCCGACTCGGAGCCATGATAAAGGCCGTGCGCGCCGTGCAG CAGCGGCGAGCGGCGACAGGCCGCGCGACGGCGACTCCAGCACACTCAAT GACGGCCGAATGCGCGCTGTGCGCATCACCGCGGAGGGCCACGTGTACAA GACCACATCGCTGCGCGCCGCGCCTGTCCTCGACATCCCGGCATCTACGC TGGCCCGCGCTGCTGGCAGCAGCGGCGCCGCCAGCGCCGGACCCGGCACG CGACGTGGCCTGACCGTCTTCGGCCAGGACGACCGCGTCGAGATCACGGA CCCGAACGTCACGCCCTACATGGCCATAGGGCAGCTGACGTTCGACGTCG CGGACCCCGCGGCGGGCGGCGCGCAGGAGACGTACGTGTGCACGGGCACG CTCGTGGGGACGGACGCCGTGCTCACGGCCGCGCACTGCGTCTTCGACCA GGAGACCAACGACTGGGTGGACGCGACGGCCTTCTACCCCGCGCGCAGCC TCGACGCGCTCGGCGGCACCGTGGACCCGTACGGCGGCTTCGGCGTCGTC TACCGCACCGTCTACAGCGCGTGGAGCGACGGAAGCGTGGACGACCCGTT CCCCTATGACATTGCGGTGCTGCGCCTGGCGCCAAGCGCGAGCACGGGCG CGAGCGCGTTCGACACCGTGGGGTACTTCATGGGCGTGCTGGGGGACGTC TGCGCGCTGCCTGAGAGCTTCGCGGTCGTCGGCTACCCCGGCAGCGGGGG CGGCGACATGTTCGACTCGGGCGCGTGCAGTGACGCGCAGGTGAGCCGCT GCACCTACTAGTAGTACTAATAGCCTATGTGTCGGTTAAATGTAGTACTA GTGGTGCGGGTGCATGAACTAGTGGTGCAAGTTGAACTGACACTAGAGCA CTGGGTGTTTGACTCGGGCGCATGCAGTGACGCGCAGGTGAGCTGCTGCG CCTATTAATAGCCCATTTGTCGACTCAATGTAGTACTAGTGGTGCGGGTG CATGTACTAGTACAGTAGTGCAAATGACACTGGTGCAGTGCCTGCCCCAG CATCATGATATGATGCACGTGGTGCAGACTACTAGTGTTTGCACCCCTCG GCGAAAGAGCAACAAGCATCTAAATTTCTGCAGCAGACCATGCTGCATTT CACACTCTCATAATCAGCCCTCCCCCCTCTAACCTCAACCTCATCACCCA CTCGCCCATCTACGCTCTCAGGGGCACTACCAGTGCGGCGACGACATGCT GGACACCAACTGCGACTGGGTCGGCGGCAACAGCGGCGGTCCCGCCGTCA CTCTCATCGACGGCAACGCACAGGTGATGGGCGTCGTCAGCCACCACGTT GGGCCGGCTTCGGCGCTGAGCACTGCCTCCTCATCCGCATGGCTCAACGG CGACGCGTACAACACGCTGACGATGATGAACGCGGCCAAATTTGCGGACA TCTACACGTGGATGACGGAGCCCGTGCCGCAGGCCTGAGGCCGCGCAGTG GCAGCGCTCAGGGGCACTGGCATGCACTGCGCTTGACAGAAGCGGCGCGG CAGCGGCAGCGCGCTCTGCTGAAGGCTGCAGCACACCCCCGCTGAAATTG CGCATGCGTGTACACTAGAGCAACACATGATGTGTATGTAAGGTGCGGTG CGCGACGAGCGCTGCTGCATTCTGCGCAGCAACAGTCGCGCGCCTAGATG ATCAAAGCTTCAAGTTGAGGTTTCCCCAGCAAAGTCCAGTGCTGAGCGGC CCAGGCTTCAAGTTGCGGCGTAGAGTGAGCGTGTGTGTGTTTCCTCATGA GTGCAGCACAATCATTGACAATCAGCCAGCCCCCTGTTTGTGGCTCAGCT GTCGACAGTCATGGCACTGTTTGATGTTGTCAGGCTACTACTTAGGTTGT TGAGGGAGTAAATGAGGTGCAGGTCGGGCATCTTAAGCAGTTGTTTAGCG TATTGCAAACAACGAGTGCGTGTGGTGTTGCGATCAATGTAGCCGTGTGT ACATACTGTAATACCCACCAGATGGCCCCTTGGGGCCCCTTCTCTACAAA ATGGCAAAAATGATTTACTG
back to top

Coding sequence (CDS) from alignment at Contig_231:41988..44107+

>mRNA_18116 ID=mRNA_18116|Name=jgi.p|Trimin1|354325|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1107bp|location=Sequence derived from alignment at Contig_231:41988..44107+ (Tribonema minus UTEX_B_3156 )
ATGAACCGCTTCGCAGCAGAGGGGTTTGTCTTCTCGAGCTTTGAATCCTT
CGCCCCTCTGCCGACTCGGAGCCATGATAAAGGCCGTGCGCGCCGTGCAG
CAGCGGCGAGCGGCGACAGGCCGCGCGACGGCGACTCCAGCACACTCAAT
GACGGCCGAATGCGCGCTGTGCGCATCACCGCGGAGGGCCACGTGTACAA
GACCACATCGCTGCGCGCCGCGCCTGTCCTCGACATCCCGGCATCTACGC
TGGCCCGCGCTGCTGGCAGCAGCGGCGCCGCCAGCGCCGGACCCGGCACG
CGACGTGGCCTGACCGTCTTCGGCCAGGACGACCGCGTCGAGATCACGGA
CCCGAACGTCACGCCCTACATGGCCATAGGGCAGCTGACGTTCGACGTCG
CGGACCCCGCGGCGGGCGGCGCGCAGGAGACGTACGTGTGCACGGGCACG
CTCGTGGGGACGGACGCCGTGCTCACGGCCGCGCACTGCGTCTTCGACCA
GGAGACCAACGACTGGGTGGACGCGACGGCCTTCTACCCCGCGCGCAGCC
TCGACGCGCTCGGCGGCACCGTGGACCCGTACGGCGGCTTCGGCGTCGTC
TACCGCACCGTCTACAGCGCGTGGAGCGACGGAAGCGTGGACGACCCGTT
CCCCTATGACATTGCGGTGCTGCGCCTGGCGCCAAGCGCGAGCACGGGCG
CGAGCGCGTTCGACACCGTGGGGTACTTCATGGGCGTGCTGGGGGACGTC
TGCGCGCTGCCTGAGAGCTTCGCGGTCGTCGGCTACCCCGGCAGCGGGGG
CGGCGACATGTTCGACTCGGGCGCGTGCAGTGACGCGCAGGGGCACTACC
AGTGCGGCGACGACATGCTGGACACCAACTGCGACTGGGTCGGCGGCAAC
AGCGGCGGTCCCGCCGTCACTCTCATCGACGGCAACGCACAGGTGATGGG
CGTCGTCAGCCACCACGTTGGGCCGGCTTCGGCGCTGAGCACTGCCTCCT
CATCCGCATGGCTCAACGGCGACGCGTACAACACGCTGACGATGATGAAC
GCGGCCAAATTTGCGGACATCTACACGTGGATGACGGAGCCCGTGCCGCA
GGCCTGA
back to top