mRNA_4915 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348372
Unique NamemRNA_4915
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A836CFU0_9STRA (DUF1995 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFU0_9STRA)

HSP 1 Score: 490 bits (1261), Expect = 1.120e-174
Identity = 253/253 (100.00%), Postives = 253/253 (100.00%), Query Frame = 1
Query:   10 MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLDLGRDCLCILLNARLDGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF 768
            MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLDLGRDCLCILLNARLDGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF
Sbjct:    1 MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLDLGRDCLCILLNARLDGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF 253          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A6H5JKH9_9PHAE (DUF1995 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKH9_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 9.680e-62
Identity = 133/293 (45.39%), Postives = 177/293 (60.41%), Query Frame = 1
Query:    1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVAKD------APVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLG-SYKGTVQSMEPKKSKVKK--SGKKSRAGGFAKKLEAA-----------------------LGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARL---DGDNNPQRTRLRASFEGVFHLRAIGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGLF 768
            VS +RAAVQEGLKA+ SRMDV+LP+ ARLGVE   +D         DVE++DRELARLF+EMFD IGD  VVAF TD+ A  A  +W  G  YKG V  M+P+ +K  K   G  +   GFA ++EA+                           T   + VVP GTEV ++VAP+++EL+ V+ +  DLG+ CL +LLNARL   D  ++ QR      FE +FHLR +  A N++ LYR+YPK WT+ARKPK+GPPKV++    RP+  E+  A  +G  AA  G+FG +F
Sbjct:   73 VSCLRAAVQEGLKAQQSRMDVDLPFAARLGVETSDEDKDKKKYTAADVERADRELARLFLEMFDVIGDQVVVAFPTDEDAKKAIKVWSKGVPYKGKVTCMDPRPAKGPKLKRGDTNALAGFAMQVEASKKAKXXXXXXXXXXXXXXXXXXXXXXRTGTTARVVPPGTEVLLVVAPKQQELKAVQKMSNDLGQGCLIVLLNARLHQADFFDDEQREFFEQEFESMFHLRPVA-AENEDFLYRAYPKDWTVARKPKLGPPKVLSAQKQRPTEAEILTAVEKGDKAA--GVFGNIF 362          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A6V1TW35_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1TW35_HETAK)

HSP 1 Score: 162 bits (410), Expect = 1.410e-44
Identity = 104/269 (38.66%), Postives = 156/269 (57.99%), Query Frame = 1
Query:    1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGV-----AKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGP-SAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDG-----DNNPQRTRLRASFEGVFHLRAIGDASNDELLY-RSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGL 765
            +S MR ++Q  L+A+ SRM VELP GA  G+E       A      VE+SDRELARL VEMF P+G++ V  F +D+Q   A++ WG   Y+GT++++ PKK+K    GK+   GGFA  ++ A G D  GP + V+P GTEV + VAP +K++Q++E L  ++G  CL +++N R         ++ Q+      FE VF ++ I +   D LL  +++ + W +A+K   GPP+V+A     P   EVA A       A++G  GGL
Sbjct:   59 ISEMRKSIQAALQAKNSRMAVELPRGADFGMEKADDVKSATQYDGGVEKSDRELARLLVEMFQPLGESLVCTFPSDQQVKKAKSSWG-DQYEGTIKTLTPKKTK---GGKRRGKGGFAAAVKEAEGADAVGPLNGVLPPGTEVVLAVAPSQKDVQVLEKLANEVGMGCLIMIVNGRFWERKDVFQDDEQKQFFDQVFEPVFDIKLIAEPDGDGLLQVKAFGEDWVIAKKQTFGPPRVLAASAGPPGEAEVAAALEASAKLAAEGPLGGL 323          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A1Z5KBU0_FISSO (DUF1995 domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KBU0_FISSO)

HSP 1 Score: 155 bits (393), Expect = 1.830e-42
Identity = 109/250 (43.60%), Postives = 142/250 (56.80%), Query Frame = 1
Query:    1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVA---KDAPV--DVEQSDRELARLFVEMFDPIG-DATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDGDNN---PQRTRL-RASFEGVFHLRAIG-DASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVA 711
            VS  R A QE LK R SRMD+E P G +  VE  A   K  P   D ++SDRELARLFV+MF P+G D   V F+ D QA  A+NLW  G      + +   + K +++ KKS   GFA KL A L ++       +P   EV + V+P  KEL +VE +   +G   L +LLN RL   +N      T+L   +FE VFHL A   DA+ + LL+R+YPK W LARKP VGPPK +  +  RP+ EE A
Sbjct:   25 VSKCREATQEALKNRISRMDIEFPVGTKFNVEKSATKSKGPPSLQDFQRSDRELARLFVDMFQPVGGDRIAVIFKDDDQAKQAKNLWK-GDASAASRILALNRGKKQRTAKKSL--GFANKLAAELEEEKSSGPFSLPENIEVALFVSPGPKELVVVEKICDQVGDGTLVVLLNTRLASISNFGSTAATKLFTQTFESVFHLAAAPQDAAPNCLLHRAYPKDWVLARKPAVGPPKSMGRWSQRPTLEECA 271          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: W7TUG0_9STRA (DUF1995 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TUG0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.520e-37
Identity = 103/263 (39.16%), Postives = 142/263 (53.99%), Query Frame = 1
Query:    1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVD--VEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESLD--LGRDCLCILLNARLDGDN----NPQRTRLRASFEGVFHLRAIGDAS----NDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGL 753
            ++ +R A+Q  L+ R SR ++ LP G  LGVEG    +  D   E+SDRELARL VE+F PI D TVV F   +QA  A ++WG    K T+   E   S +K+  KK++ GG     E        G    +P GTEV ++VAP  KEL  V  L   LG D L I+LN  L+  +      +   L + FE VF L  + DA+    ++ LLYRSYP  W++A+K  +GPPK++A+   R + EE   A  EG    +K L
Sbjct:   70 INGLRFAMQRALRDRKSRAEINLPRGTPLGVEGPGAGSADDDKYEKSDRELARLTVELFKPIIDNTVVIFSQGRQARRAASIWGTALVK-TMALDEMTSSAIKRKNKKAKKGGGFGASEGG------GEMTTLPPGTEVCIVVAPGPKELSAVRRLSESLGFDTLLIILNTPLEEASPHLPKDEAVALLSEFEPVFFLNVLNDAAVKTLDNVLLYRSYPGEWSIAQKGALGPPKILASKPERFTKEEKLIALREGAENNAKPL 325          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A7S2V579_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V579_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.530e-37
Identity = 99/276 (35.87%), Postives = 150/276 (54.35%), Query Frame = 1
Query:    1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDV----EQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKS--------KVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARL---DGDNNPQRTRLRASFEGVFHLRAIGDASNDE----LLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFGGL 765
            V+ +R +VQE L+ RCSRM V+LP GA  G+E   + + V+      ++DRELARL VEMF P+G+  V AF TDKQA  A+  W    Y+G +Q++ PKK         K KK G+KS    FA  L+     D    S+++P GTEV ++VAP  K+L  VE L  ++G   L +L NARL      +  Q+     +F  V+ +  I +   ++    ++YR +PK W +A++   G  K++A  + +  A EV +A  +      +GL G +
Sbjct:   63 VTELRKSVQEALRDRCSRMHVDLPPGAVFGIENEKELSVVEQVGAGAKNDRELARLLVEMFQPLGENLVCAFSTDKQAKQAKKAWENSFYQGKIQALVPKKDDDLMFSRRKFKK-GRKS----FAAALDEEFNGDNSFASSILPKGTEVLIVVAPTPKDLNTVEKLAKEVGMGTLILLANARLYETGFKDEEQKDFFLNTFNPVYQIEIIPEPDIEKNGGLMMYRGFPKKWVIAKRGNFGV-KILAESEDKFGASEVQKAVEKSSDIEKQGLLGKI 332          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: L1JPR1_GUITC (DUF1995 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JPR1_GUITC)

HSP 1 Score: 141 bits (356), Expect = 3.810e-37
Identity = 95/249 (38.15%), Postives = 137/249 (55.02%), Query Frame = 1
Query:   10 MRAAVQEGLKARCSRMDVELPYGARLGVEG--VAKDAPV------DVEQSDRELARLFVEMF--DPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDG---DNNPQRTRLRASFEGVFHLRAIGDAS-NDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEV 708
            +R A+Q  L ++CSRMD+E PYG+ +GVEG   A D+ V      D + SDRELAR  VEMF    I    VVAF    QA  A   W  G++ G V  ++   SK  K   ++  GGF   ++   G   +  ++ +P GTEV ++V+P  K+L+ +E +  ++G  CL IL NARLD    ++  QR      FE V+HLR     S N  +L+R++P  W +A   K+GPPKV+     +PS E +
Sbjct:   16 LRDAMQAALSSKCSRMDIEFPYGSNIGVEGRKTATDSEVPMVMQDDAQASDRELARAMVEMFRGTEIEQNLVVAFMDSPQANKATKRWA-GAFAGKVIVLD---SKQNKRPARAGGGGFGASVK---GTAVKAKTSAIPEGTEVLIVVSPSVKDLKALEQICSEVGMGCLVILANARLDELNYESESQRNFFLNEFERVYHLRPSPSPSWNGGVLFRAFPGDWVVAMPRKIGPPKVLYRSSQKPSTEVI 257          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A7S4G6C5_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4G6C5_9EUGL)

HSP 1 Score: 141 bits (356), Expect = 1.230e-35
Identity = 98/256 (38.28%), Postives = 145/256 (56.64%), Query Frame = 1
Query:   10 MRAAVQEGLKARCSRMDVELPYGARLGVEG--VAKDAPVDVEQSDRELARLFVEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKSGKKSRAG-GFAKKLEAALGDDTEGPS-AVVPAGTEVFVLVAPQEKELQMVE--SLDLGRDCLCILLNARLDGDNNP-----QRTRLRASFEGVFHLRAIGDASNDE-----LLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEG 729
            ++ +VQ  L+ R SRM++E+P  A+  VE   + K     +E+SDRELARLFVEMFDPIG++ V+ F  ++ A  A+  W   + KG + +++   S   K   K + G G  KK ++A    ++GP    V A  EV + VAP   +   +E  S   G+DC  ILLNARL+ +        Q   L+++F  ++ LR + +A   E     +L +SYP+ W +ARKPK+GPP V+     +PSAEEV  AA EG
Sbjct:  188 LKQSVQAALQGRQSRMEIEMPIAAKFAVESGPLGKGRLPAMERSDRELARLFVEMFDPIGESVVLVFNENRLAKEAKRKWA--TTKGAIIALD---SPTGKPAAKPKTGFGVQKKAKSA---PSQGPDPGKVLANAEVIIFVAPTAAQFSTIEKVSQQRGQDCCIILLNARLNMETTKYISPEQEENLKSTFNTIYLLRPLLEADGGEKGVECILLKSYPEGWLVARKPKIGPPVVLLESAEKPSAEEV-RAALEG 434          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: B7FWV6_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWV6_PHATC)

HSP 1 Score: 137 bits (344), Expect = 9.920e-35
Identity = 105/254 (41.34%), Postives = 141/254 (55.51%), Query Frame = 1
Query:    1 VSAMRAAVQEGLKARCSRMDVELPYGARLGVE-GVAK----DAPV--DVEQSDRELARLFVEMFDPIG-DATVVAFRTDKQAAAARNLW-GLGSYKGTVQSMEPKKSKVKKSGKKSRAGGFAKKLEAAL-GD-DTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDGDNN----PQRTRLRASFEGVFHLRA-IGDASNDELLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEEV 708
            V + R A QE LK R SRMD+E P GA+  +E G A+    + P   ++++SDRELARLFV+MF P+G D   V F     A  AR  W G  +    + S++ +KS+  K  KK  + GFA KL A + G+ D  GP  + P  TEV + VAP  KEL  VE +  ++G + L +LLNARL   +N             FE VF L A   DA+   LLYR+YP  W +ARKP VG PK V     +P+ ++V
Sbjct:   69 VKSCREATQEALKNRISRMDIEFPVGAKFNIEKGEARRNAGETPTKDELDRSDRELARLFVDMFQPVGGDRIAVVFADVSAADKARKTWKGDTTAICNIVSLDRRKSQASKK-KKKNSKGFAAKLAAEVEGEMDMSGPFRL-PGKTEVALFVAPGPKELITVEKICQEVGMETLVVLLNARLSAVSNFGSAATAELFLGKFESVFSLTAGPQDAAPGCLLYRAYPGRWVVARKPAVGQPKAVLEQSEKPTPDQV 320          
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Match: A0A7S2A396_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A396_TRICV)

HSP 1 Score: 132 bits (331), Expect = 1.090e-33
Identity = 92/215 (42.79%), Postives = 117/215 (54.42%), Query Frame = 1
Query:  124 VEQSDRELARLFVEMFDPIGDATV-VAFRTDKQAAAARNLW-GLGSYKGTVQSMEPKKSKVKKSG---------KKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVESL--DLGRDCLCILLNARLDGDNN----PQRTRLRASFEGVFHLRAIGDASNDE----LLYRSYPKAWTLARKPKVGPPKVVATFDSRPSAEE 705
            +++SDRELARLFVEMF P+G + + VAF  +  A AAR  W G  S    V  +   K   K  G         KK R  GFA K+ A L DD       +P GTEV + V+P  KEL  +E +  ++G   L +LLNARL   +N      R+     F  VFHL A   A  +E    LL+RSYP  W LARKPKVGPPK + T++ RP+ EE
Sbjct:   19 LDKSDRELARLFVEMFQPVGGSAITVAFANENLAEAARKRWKGDSSAACRVVGVARSKGGSKSGGMXXXXXXXNKKKRPKGFAAKMAAELDDDGSSGPFALPQGTEVALFVSPGPKELVAIERICNEVGMGTLVVLLNARLSRVSNFGTDAARSLFLEEFVPVFHLAA---APQEEAPGCLLHRSYPGKWALARKPKVGPPKTIGTYEGRPTGEE 230          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348372 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CFU0_9STRA1.120e-174100.00DUF1995 domain-containing protein n=1 Tax=Tribonem... [more]
A0A6H5JKH9_9PHAE9.680e-6245.39DUF1995 domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6V1TW35_HETAK1.410e-4438.66Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1Z5KBU0_FISSO1.830e-4243.60DUF1995 domain-containing protein n=2 Tax=Fistulif... [more]
W7TUG0_9STRA2.520e-3739.16DUF1995 domain-containing protein n=2 Tax=Monodops... [more]
A0A7S2V579_9STRA3.530e-3735.87Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
L1JPR1_GUITC3.810e-3738.15DUF1995 domain-containing protein n=1 Tax=Guillard... [more]
A0A7S4G6C5_9EUGL1.230e-3538.28Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
B7FWV6_PHATC9.920e-3541.34Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2A396_TRICV1.090e-3342.79Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:514554..516878 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348372|estExt_Genemark1.C_Ctg_230060
DescriptionDomain of unknown function (DUF1995)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2CISB@1|root,2S3S4@2759|Eukaryota
Evalue3.4e-38
Seed ortholog55529.EKX50254
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-06_003330.1
TranscriptId348694
TrackFilteredModels1
ProteinId348372
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348372gene_4915Tribonema minus UTEX_B_3156 geneContig_23 514554..516878 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348372Trimin1|348372|estExt_Genemark1.C_Ctg_230060Tribonema minus UTEX_B_3156 polypeptideContig_23 514563..516858 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_4915_1exon_4915_1Tribonema minus UTEX_B_3156 exonContig_23 514554..514580 +
exon_4915_2exon_4915_2Tribonema minus UTEX_B_3156 exonContig_23 514999..515163 +
exon_4915_3exon_4915_3Tribonema minus UTEX_B_3156 exonContig_23 515419..515487 +
exon_4915_4exon_4915_4Tribonema minus UTEX_B_3156 exonContig_23 516083..516268 +
exon_4915_5exon_4915_5Tribonema minus UTEX_B_3156 exonContig_23 516535..516878 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_4915UTR5_4915Tribonema minus UTEX_B_3156 five_prime_UTRContig_23 514554..514562 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_4915CDS_4915Tribonema minus UTEX_B_3156 CDSContig_23 514563..514580 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_4915UTR3_4915Tribonema minus UTEX_B_3156 three_prime_UTRContig_23 516859..516878 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_4915 ID=mRNA_4915|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=791bp|location=Sequence derived from alignment at Contig_23:514554..516878+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTATCGGCTATGCGTGCTGCAGTTCAGGAAGGACTGAAGGCCAGGTGCAG
CAGGATGGACGTTGAACTTCCGTATGGAGCCAGGCTCGGGGTAGAGGGGG
TGGCAAAGGATGCACCTGTAGACGTGGAGCAGTCAGATCGGGAGTTGGCG
CGGCTGTTTGTTGAAATGTTCGACCCCATTGGCGATGCTACGGTTGTGGC
ATTCCGGACGGACAAGCAGGCAGCAGCTGCGCGGAACCTTTGGGGGCTGG
GCTCATACAAGGGCACAGTGCAATCAATGGAGCCAAAGAAGAGCAAAGTG
AAGAAGTCTGGAAAGAAGAGCAGGGCAGGTGGATTCGCCAAGAAGCTAGA
GGCGGCGCTGGGAGATGACACAGAAGGGCCTTCTGCTGTGGTGCCAGCAG
GCACGGAGGTGTTTGTACTGGTGGCACCGCAAGAAAAGGAGCTGCAGATG
GTGGAGAGCCTGGACCTGGGCCGTGACTGCCTGTGCATCCTCCTCAACGC
GCGGTTAGACGGCGACAACAACCCACAGCGCACGCGCCTGCGCGCCTCAT
TCGAAGGCGTCTTTCACCTGCGCGCCATCGGAGACGCTTCGAACGATGAG
CTACTCTACAGGTCTTACCCCAAGGCCTGGACGCTGGCACGCAAGCCCAA
GGTCGGACCGCCCAAGGTGGTCGCAACATTTGACAGCCGGCCTTCTGCGG
AGGAGGTTGCAGAGGCAGCGGCGGAGGGCGTTGCTGCTGCCTCCAAAGGG
CTTTTCGGTGGCTTGTTTTGAATGTACTAGCCTTGTTCGTC
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protein sequence of jgi.p|Trimin1|348372

>Trimin1|348372|estExt_Genemark1.C_Ctg_230060 ID=Trimin1|348372|estExt_Genemark1.C_Ctg_230060|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=254bp
MRAAVQEGLKARCSRMDVELPYGARLGVEGVAKDAPVDVEQSDRELARLF
VEMFDPIGDATVVAFRTDKQAAAARNLWGLGSYKGTVQSMEPKKSKVKKS
GKKSRAGGFAKKLEAALGDDTEGPSAVVPAGTEVFVLVAPQEKELQMVES
LDLGRDCLCILLNARLDGDNNPQRTRLRASFEGVFHLRAIGDASNDELLY
RSYPKAWTLARKPKVGPPKVVATFDSRPSAEEVAEAAAEGVAAASKGLFG
GLF*
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mRNA from alignment at Contig_23:514554..516878+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4915 ID=mRNA_4915|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2325bp|location=Sequence derived from alignment at Contig_23:514554..516878+ (Tribonema minus UTEX_B_3156 )
GTATCGGCTATGCGTGCTGCAGTTCAGGTGAGGGTCTTGAATATCATTGT CCTGGCATGTGTCGCAACGAGCCTGATTATCCTGTGCACTCAAGGCATGC ATTACAAAGCACATGACTTAATTCAACGTGCTCAAGTTGTCGAAAATCTC AACAAGTTTCAAATCAACGTCATCGGGGACAAGTTCAACCACCTGTGCCA GTGGGGGGGATGTGTGCCTGCCAGTCGTTGTGCATCTCAAAAGGATCGAT GTGCATCAGCATTGACAGCATGTCATGTGCAATGATCCCTTCCCATATGT GTTTGCGCCACTGCCTTCACCTGTGCATTGACTACACCCAATTTTAGTTG GTGATCCGCCTTGCTGATTGCTGGCTGGCATACCCGTTGTACCGACTGTT GATGCATGTTGTTTGGTATATTGAACTTCCCCACACACTCCACAGGAAGG ACTGAAGGCCAGGTGCAGCAGGATGGACGTTGAACTTCCGTATGGAGCCA GGCTCGGGGTAGAGGGGGTGGCAAAGGATGCACCTGTAGACGTGGAGCAG TCAGATCGGGAGTTGGCGCGGCTGTTTGTTGAAATGTTCGACCCCATTGG CGATGCTACGGTGAGAATACACTGATACGTCTCGGCATGCCGACGTCACT GCAATGCGGCATGGCTTGAAATGTGAAGCTTCATGTGTTGAACCTGCGGG TGCCGACCACCGCTGCACTTCTATCGCTTTTGGAGTACGCGGTCTGGTTT AGAAGACTCATGCGGGCTGCCTTTTGCATTTGTCAAACAGCAGGGGCCGC TGTGCCAGCTGTCAACGCAAAACCTCTGCTTCACCATAGACAATTTTTTT GGTGTCTGCACACAGGTTGTGGCATTCCGGACGGACAAGCAGGCAGCAGC TGCGCGGAACCTTTGGGGGCTGGGCTCATACAAGGTGAGAGCAGTTCAGG GTTGATGCAGAAAGTAACATGGGTTGACACTATGGGTATCGTTGCTGTGC TCTGCAACCAACATGAAGTACTTCCCTGGTCTCTACTGTCACAGAGGCAT CATGTTTGGTGTGTGGAAGGTGCGAGCTATATTCTGATCATGTCGGTCTG CAACATTGGTTGCGCTGCTGAACTTGTGTTTGTCTTATCATGCCGCCAAG TGTGGTCATGCTGCTGTCGTATTACTTGTGTAAGAAGAGGTGAGAAGCGG ATCACGAGCTACTGTTTCCTGCTGCAATTGTCATCTCAGTGAGACCAATC ACATTATGCGTTGTTTGTGGGGAAAACGTGCATCGTGCTTTGTGCCTCAC CAGCCTTGCCCATTTGGCAGTGAACTTGGTAATGAGGTTGCTACTGCCCA TGCTGCGTTTCTCCAGTATCATGATTATGTGGATGCGCAGTTGACACAGG GTCATGACACACCTGTGGCGGCTATGGACATGGACCATTCTTCAGTGTCA CAAGTGGTCAGTATACTGCGTCACCGAGCAGCACAGCCAAATAGTAACAT GCTCGACTACTGTACTCTGCTCTGTTCAGGGCACAGTGCAATCAATGGAG CCAAAGAAGAGCAAAGTGAAGAAGTCTGGAAAGAAGAGCAGGGCAGGTGG ATTCGCCAAGAAGCTAGAGGCGGCGCTGGGAGATGACACAGAAGGGCCTT CTGCTGTGGTGCCAGCAGGCACGGAGGTGTTTGTACTGGTGGCACCGCAA GAAAAGGAGCTGCAGGTGAGGTTTCAATATTGACCGCACACAACACGGAC TGGGAGCCCTGCACTCGTTGTGTGCGGCTGTTTGTGCCGAGGCCCATTGA CACAAATCACCAACAACGACGCATGAGGCGATCAAACAACTCTCCTACTT TGTTTTGCAGGAAAACTGTGGCGTTGCGAGCACCGGAGTGAATTGCAGTG CATATCTCGTATACATCCGTGGTTTTGTGTCAGTTGTGGTGACCAGCAAG CTTAATGCTGCACTGCGCCACTGCCACGCAGATGGTGGAGAGCCTGGACC TGGGCCGTGACTGCCTGTGCATCCTCCTCAACGCGCGGTTAGACGGCGAC AACAACCCACAGCGCACGCGCCTGCGCGCCTCATTCGAAGGCGTCTTTCA CCTGCGCGCCATCGGAGACGCTTCGAACGATGAGCTACTCTACAGGTCTT ACCCCAAGGCCTGGACGCTGGCACGCAAGCCCAAGGTCGGACCGCCCAAG GTGGTCGCAACATTTGACAGCCGGCCTTCTGCGGAGGAGGTTGCAGAGGC AGCGGCGGAGGGCGTTGCTGCTGCCTCCAAAGGGCTTTTCGGTGGCTTGT TTTGAATGTACTAGCCTTGTTCGTC
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Coding sequence (CDS) from alignment at Contig_23:514554..516878+

>mRNA_4915 ID=mRNA_4915|Name=jgi.p|Trimin1|348372|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=762bp|location=Sequence derived from alignment at Contig_23:514554..516878+ (Tribonema minus UTEX_B_3156 )
ATGCGTGCTGCAGTTCAGGAAGGACTGAAGGCCAGGTGCAGCAGGATGGA
CGTTGAACTTCCGTATGGAGCCAGGCTCGGGGTAGAGGGGGTGGCAAAGG
ATGCACCTGTAGACGTGGAGCAGTCAGATCGGGAGTTGGCGCGGCTGTTT
GTTGAAATGTTCGACCCCATTGGCGATGCTACGGTTGTGGCATTCCGGAC
GGACAAGCAGGCAGCAGCTGCGCGGAACCTTTGGGGGCTGGGCTCATACA
AGGGCACAGTGCAATCAATGGAGCCAAAGAAGAGCAAAGTGAAGAAGTCT
GGAAAGAAGAGCAGGGCAGGTGGATTCGCCAAGAAGCTAGAGGCGGCGCT
GGGAGATGACACAGAAGGGCCTTCTGCTGTGGTGCCAGCAGGCACGGAGG
TGTTTGTACTGGTGGCACCGCAAGAAAAGGAGCTGCAGATGGTGGAGAGC
CTGGACCTGGGCCGTGACTGCCTGTGCATCCTCCTCAACGCGCGGTTAGA
CGGCGACAACAACCCACAGCGCACGCGCCTGCGCGCCTCATTCGAAGGCG
TCTTTCACCTGCGCGCCATCGGAGACGCTTCGAACGATGAGCTACTCTAC
AGGTCTTACCCCAAGGCCTGGACGCTGGCACGCAAGCCCAAGGTCGGACC
GCCCAAGGTGGTCGCAACATTTGACAGCCGGCCTTCTGCGGAGGAGGTTG
CAGAGGCAGCGGCGGAGGGCGTTGCTGCTGCCTCCAAAGGGCTTTTCGGT
GGCTTGTTTTGA
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