mRNA_4962 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|143813
Unique Name	mRNA_4962
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|143813 vs. uniprot
Match: A0A836CFV2_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.250e-14
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 1

Query:    1 VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRI 132
            VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRI
Sbjct:    1 VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRI 44

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|143813 vs. uniprot

BLAST of jgi.p|Trimin1|143813 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CFV2_9STRA	4.250e-14	100.00	Armadillo-type protein (Fragment) n=1 Tax=Tribonem...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_23	contig	Contig_23:939345..940430 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|143813\|gw1.23.162.1
Hectar predicted targeting category	other localisation
TranscriptId	144135
Track	FilteredModels1
ProteinId	143813

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|143813	gene_4962	Tribonema minus UTEX_B_3156	gene	Contig_23 939345..940430 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_4962_1	exon_4962_1	Tribonema minus UTEX_B_3156	exon	Contig_23 939345..940430 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_4962	CDS_4962	Tribonema minus UTEX_B_3156	CDS	Contig_23 939345..940430 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|143813	Trimin1\|143813\|gw1.23.162.1	Tribonema minus UTEX_B_3156	polypeptide	Contig_23 939345..940430 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_23:939345..940430+
coding sequence from alignment at Contig_23:939345..940430+

spliced messenger RNA

>mRNA_4962 ID=mRNA_4962|Name=jgi.p|Trimin1|143813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1086bp|location=Sequence derived from alignment at Contig_23:939345..940430+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTCAAGCTTGGCGCGGCGGGTGCGATCGACGCAGTGGTGGCTGCCATGCA
GGCGTATGCCTCTGACGTCAAAATTCAGCGATACAGCACCTGGGCCGTCT
CCACCCTGGCCGGCAACGAAGAGAATCGCATCAAGCTTGGTGCCGCGGGC
GCATGCGACGCGGTGGTGGCTGCCATGCAGGCACACATCTCCGACGACAA
TGTGCAACAAATTGGCGCCTGGGCCGTTGCCACTCTGGCCAATAACGAGG
AGAACAGCGCCAAGCTCGGCGCGGCAGGTGCGTGCACCGCAGTGGTGGCT
GCTATGAAGGCGCACGCCTCCGACGTCGATATGCAGCACTATGGCGTTGC
GGCCATTGGCAACCTGGCCATAAACGAGGATAACAGCGCCAAGCTTGGCG
CAGCGGGCGCGAGCGACGCGGTGGTGGGTGCCATGAAGGCGCACACCTCC
GACGGCAACGTGCAGCACTTCGGCGCCTGGGCTCTTATCAACCTAGCCGA
GAACGCGGAGAACAGCGCCAAGCTCGGCGCGGCAGGTGCATGCGACGTGG
TGGTGACCGCCATGAAGGCACACGCCTCCGACGTCAATGTACAGCACTAT
GGCGCTGGGGCCGTTGTCAACCTAGCCGAGAACGCGGAGAACAGCGCCAA
GCTCGGCACGGCCGGCGCATGCGCGGTGGTGAGCGCCATGAAGGCGCATG
CCTCCGACATCAATGTGCAGCAGGGAGGCGCCCAGGCCGTTGCCAACCTA
GCCGACTCGGAGGACGCGGAGAACAGCGCCTTGCTCGGCGCGGCGGGTGC
ATGCGACGCAGCGGTAACCGCCATGAAGGTGCACGCAACTGGCGGTGATT
TGCAGCACTACGGTGCCCATGCTGTAGCCAAACTGGCTAACAACGCGGAA
AACAGCGCCATGCTCGGCGCGGCGGGCACATGCAGTGCGGTCGTAGCCGC
CATGAAGGCGCATGCCTTCAACATCGATGTGCAGCACTACTGCTCCTGGG
CCATCGCCGGGCTGGCCCAGAATACGGACAACCGCATCGCACTCCTGGCA
GCGGGCGCATTACCCGCAGTGGTGGTTGCCATGAGG

protein sequence of jgi.p|Trimin1|143813

>Trimin1|143813|gw1.23.162.1 ID=Trimin1|143813|gw1.23.162.1|Name=jgi.p|Trimin1|143813|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=362bp
VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRIKLGAAG
ACDAVVAAMQAHISDDNVQQIGAWAVATLANNEENSAKLGAAGACTAVVA
AMKAHASDVDMQHYGVAAIGNLAINEDNSAKLGAAGASDAVVGAMKAHTS
DGNVQHFGAWALINLAENAENSAKLGAAGACDVVVTAMKAHASDVNVQHY
GAGAVVNLAENAENSAKLGTAGACAVVSAMKAHASDINVQQGGAQAVANL
ADSEDAENSALLGAAGACDAAVTAMKVHATGGDLQHYGAHAVAKLANNAE
NSAMLGAAGTCSAVVAAMKAHAFNIDVQHYCSWAIAGLAQNTDNRIALLA
AGALPAVVVAMR

mRNA from alignment at Contig_23:939345..940430+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4962 ID=mRNA_4962|Name=jgi.p|Trimin1|143813|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1086bp|location=Sequence derived from alignment at Contig_23:939345..940430+ (Tribonema minus UTEX_B_3156 )
GTCAAGCTTGGCGCGGCGGGTGCGATCGACGCAGTGGTGGCTGCCATGCA
GGCGTATGCCTCTGACGTCAAAATTCAGCGATACAGCACCTGGGCCGTCT
CCACCCTGGCCGGCAACGAAGAGAATCGCATCAAGCTTGGTGCCGCGGGC
GCATGCGACGCGGTGGTGGCTGCCATGCAGGCACACATCTCCGACGACAA
TGTGCAACAAATTGGCGCCTGGGCCGTTGCCACTCTGGCCAATAACGAGG
AGAACAGCGCCAAGCTCGGCGCGGCAGGTGCGTGCACCGCAGTGGTGGCT
GCTATGAAGGCGCACGCCTCCGACGTCGATATGCAGCACTATGGCGTTGC
GGCCATTGGCAACCTGGCCATAAACGAGGATAACAGCGCCAAGCTTGGCG
CAGCGGGCGCGAGCGACGCGGTGGTGGGTGCCATGAAGGCGCACACCTCC
GACGGCAACGTGCAGCACTTCGGCGCCTGGGCTCTTATCAACCTAGCCGA
GAACGCGGAGAACAGCGCCAAGCTCGGCGCGGCAGGTGCATGCGACGTGG
TGGTGACCGCCATGAAGGCACACGCCTCCGACGTCAATGTACAGCACTAT
GGCGCTGGGGCCGTTGTCAACCTAGCCGAGAACGCGGAGAACAGCGCCAA
GCTCGGCACGGCCGGCGCATGCGCGGTGGTGAGCGCCATGAAGGCGCATG
CCTCCGACATCAATGTGCAGCAGGGAGGCGCCCAGGCCGTTGCCAACCTA
GCCGACTCGGAGGACGCGGAGAACAGCGCCTTGCTCGGCGCGGCGGGTGC
ATGCGACGCAGCGGTAACCGCCATGAAGGTGCACGCAACTGGCGGTGATT
TGCAGCACTACGGTGCCCATGCTGTAGCCAAACTGGCTAACAACGCGGAA
AACAGCGCCATGCTCGGCGCGGCGGGCACATGCAGTGCGGTCGTAGCCGC
CATGAAGGCGCATGCCTTCAACATCGATGTGCAGCACTACTGCTCCTGGG
CCATCGCCGGGCTGGCCCAGAATACGGACAACCGCATCGCACTCCTGGCA
GCGGGCGCATTACCCGCAGTGGTGGTTGCCATGAGG

Coding sequence (CDS) from alignment at Contig_23:939345..940430+

>mRNA_4962 ID=mRNA_4962|Name=jgi.p|Trimin1|143813|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1086bp|location=Sequence derived from alignment at Contig_23:939345..940430+ (Tribonema minus UTEX_B_3156 )
GTCAAGCTTGGCGCGGCGGGTGCGATCGACGCAGTGGTGGCTGCCATGCA
GGCGTATGCCTCTGACGTCAAAATTCAGCGATACAGCACCTGGGCCGTCT
CCACCCTGGCCGGCAACGAAGAGAATCGCATCAAGCTTGGTGCCGCGGGC
GCATGCGACGCGGTGGTGGCTGCCATGCAGGCACACATCTCCGACGACAA
TGTGCAACAAATTGGCGCCTGGGCCGTTGCCACTCTGGCCAATAACGAGG
AGAACAGCGCCAAGCTCGGCGCGGCAGGTGCGTGCACCGCAGTGGTGGCT
GCTATGAAGGCGCACGCCTCCGACGTCGATATGCAGCACTATGGCGTTGC
GGCCATTGGCAACCTGGCCATAAACGAGGATAACAGCGCCAAGCTTGGCG
CAGCGGGCGCGAGCGACGCGGTGGTGGGTGCCATGAAGGCGCACACCTCC
GACGGCAACGTGCAGCACTTCGGCGCCTGGGCTCTTATCAACCTAGCCGA
GAACGCGGAGAACAGCGCCAAGCTCGGCGCGGCAGGTGCATGCGACGTGG
TGGTGACCGCCATGAAGGCACACGCCTCCGACGTCAATGTACAGCACTAT
GGCGCTGGGGCCGTTGTCAACCTAGCCGAGAACGCGGAGAACAGCGCCAA
GCTCGGCACGGCCGGCGCATGCGCGGTGGTGAGCGCCATGAAGGCGCATG
CCTCCGACATCAATGTGCAGCAGGGAGGCGCCCAGGCCGTTGCCAACCTA
GCCGACTCGGAGGACGCGGAGAACAGCGCCTTGCTCGGCGCGGCGGGTGC
ATGCGACGCAGCGGTAACCGCCATGAAGGTGCACGCAACTGGCGGTGATT
TGCAGCACTACGGTGCCCATGCTGTAGCCAAACTGGCTAACAACGCGGAA
AACAGCGCCATGCTCGGCGCGGCGGGCACATGCAGTGCGGTCGTAGCCGC
CATGAAGGCGCATGCCTTCAACATCGATGTGCAGCACTACTGCTCCTGGG
CCATCGCCGGGCTGGCCCAGAATACGGACAACCGCATCGCACTCCTGGCA
GCGGGCGCATTACCCGCAGTGGTGGTTGCCATGAGG