Trimin1|143813|gw1.23.162.1 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|143813
Unique NameTrimin1|143813|gw1.23.162.1
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length362
Homology
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BLAST of jgi.p|Trimin1|143813 vs. uniprot
Match: A0A836CFV2_9STRA (Armadillo-type protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFV2_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 4.250e-14
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 0 
Query:    1 VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRI 44
            VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRI
Sbjct:    1 VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRI 44
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|143813 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CFV2_9STRA4.250e-14100.00Armadillo-type protein (Fragment) n=1 Tax=Tribonem... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 298..340
e-value: 50.0
score: 7.8
coord: 125..167
e-value: 220.0
score: 2.8
coord: 168..210
e-value: 85.0
score: 6.1
coord: 82..124
e-value: 27.0
score: 9.9
coord: 3..38
e-value: 240.0
score: 2.5
coord: 39..81
e-value: 7.7
score: 14.1
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 7..51
score: 8.7324
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 2..362
e-value: 1.9E-46
score: 160.6
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 79..214
NoneNo IPR availablePANTHERPTHR22895:SF7PROTEIN AARDVARKcoord: 4..128
coord: 214..362
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 4..128
coord: 214..362
NoneNo IPR availablePANTHERPTHR22895:SF7PROTEIN AARDVARKcoord: 79..214
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 7..218
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 193..359

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_23contigContig_23:939345..940430 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|143813mRNA_4962Tribonema minus UTEX_B_3156 mRNAContig_23 939345..940430 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|143813|gw1.23.162.1 ID=Trimin1|143813|gw1.23.162.1|Name=jgi.p|Trimin1|143813|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=362bp
VKLGAAGAIDAVVAAMQAYASDVKIQRYSTWAVSTLAGNEENRIKLGAAG
ACDAVVAAMQAHISDDNVQQIGAWAVATLANNEENSAKLGAAGACTAVVA
AMKAHASDVDMQHYGVAAIGNLAINEDNSAKLGAAGASDAVVGAMKAHTS
DGNVQHFGAWALINLAENAENSAKLGAAGACDVVVTAMKAHASDVNVQHY
GAGAVVNLAENAENSAKLGTAGACAVVSAMKAHASDINVQQGGAQAVANL
ADSEDAENSALLGAAGACDAAVTAMKVHATGGDLQHYGAHAVAKLANNAE
NSAMLGAAGTCSAVVAAMKAHAFNIDVQHYCSWAIAGLAQNTDNRIALLA
AGALPAVVVAMR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold