mRNA_4908 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A835Z9S0_9STRA (FAM192A_Fyv6_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9S0_9STRA) HSP 1 Score: 293 bits (750), Expect = 8.440e-98 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 3 Query: 36 MTSIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFASARANQIVAAAHEMRAVRHVVAAPKSEDARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVASDHGSANDGGGLGGLVAYGSEDSDA 680 MTSIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFASARANQIVAAAHEMRAVRHVVAAPKSEDARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVASDHGSANDGGGLGGLVAYGSEDSDA Sbjct: 1 MTSIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFASARANQIVAAAHEMRAVRHVVAAPKSEDARGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPVASDHGSANDGGGLGGLVAYGSEDSDA 215
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A6H5KAM6_9PHAE (FAM192A_Fyv6_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM6_9PHAE) HSP 1 Score: 115 bits (287), Expect = 2.030e-27 Identity = 68/120 (56.67%), Postives = 85/120 (70.83%), Query Frame = 3 Query: 36 MTSIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFASARANQIVAAA 395 M IGFVSTSVLESKDGIDF +E R E+E+V EAE+ A EA ++PLWEQL + + K K+D VR ++FAPP+ LD+E+ FLQ VE R AK+ +K E E+ FA ARANQ VA A Sbjct: 1 MAHIGFVSTSVLESKDGIDFNEEVRKESEDVLEAERIAKEADKKPLWEQLAGKRDEKQAKFDAVRASMFAPPRALDDEESNFLQGVEAQRLEAKERKKKWETEELRGFALARANQTVAIA 120
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: D8LM72_ECTSI (R3H domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM72_ECTSI) HSP 1 Score: 117 bits (293), Expect = 2.200e-26 Identity = 72/140 (51.43%), Postives = 93/140 (66.43%), Query Frame = 3 Query: 36 MTSIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFASARANQIVAAAHEMRAVRHVVAAPKSEDARG 455 M IGFVSTSVLESKDGIDF +E R E+E+V+EAE+ A EA ++PLWEQL + + K K+D VR ++FAPP+ LD+E+ FLQ VE R AK+ +K E E+ FA ARANQ VA A + A P ++ RG Sbjct: 1 MAHIGFVSTSVLESKDGIDFNEEVRKESEDVREAERIAKEADKKPLWEQLAGKRDEKQAKFDAVRASMFAPPRALDDEESNFLQGVEAQRLEAKERKKKWETEELRGFALARANQTVAIAEPKKPK----AKPPADGGRG 136
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A7S3GT51_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT51_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 3.170e-17 Identity = 54/137 (39.42%), Postives = 83/137 (60.58%), Query Frame = 3 Query: 42 SIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFASARANQIVAAAHEM-RAVRHVVAAPKSEDA 449 ++ FV TS+L S DGIDFG E +E++EV++ A A +PL+EQL + + K +YDE K IFAPPKGLDEED+ F +++A+ A+ K E+EAF +R +++ E+ A +++ K+E A Sbjct: 2 TLRFVKTSILSSSDGIDFGTEIAVESDEVRKTRVAAEAAGNKPLYEQLADIRDRKKLEYDENTKKIFAPPKGLDEEDIDFFNEMDDAKARAEDQNKRLVDAELEAFRESRRIELLKEPQELPHATFNIIPPKKTEPA 138
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A5D6Y6N2_9STRA (FAM192A_Fyv6_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6N2_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 6.970e-7 Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3 Query: 48 GFVSTSVLESKDGIDFGDEKRLETEEVKEAEK--RALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEE 299 GFVSTSVL S DG+ FGD +E + + +A RA +A RPL+++LQE +E K ++ E FAPPK LDEE+++FL+ +EE Sbjct: 20 GFVSTSVLTSSDGL-FGD--NVEEQRIADAPAAPRAQDADYRPLYDRLQELKERKDNEWREKNNP-FAPPKALDEEEISFLRDLEE 101
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A1W0A0A2_9STRA (FAM192A_Fyv6_N domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A0A2_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.600e-6 Identity = 41/112 (36.61%), Postives = 69/112 (61.61%), Query Frame = 3 Query: 48 GFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAA----RRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFASAR 371 GFVSTSVL S DG+ FGD EE + ++K A + +RPL+E+L+E ++ + ++ E FAPPKGLD+E++ FL+++E+ +++ T K + ++ F A+ Sbjct: 35 GFVSTSVLSSSDGL-FGDN----VEETRISDKPAASGSSVVDQRPLYERLKEMKDKRDAEWKEKNNP-FAPPKGLDDEEIDFLRTLEDQQKSIDDTLKRQHETDLAQFQMAK 140
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A329S0L6_9STRA (FAM192A_Fyv6_N domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S0L6_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.240e-6 Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = 3 Query: 48 GFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALE--AARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVE 296 GFVSTS+L S DG+ FGD +E V EA + +PL+EQLQER+E K ++ E FAPPKGLDEE++ ++Q +E Sbjct: 12 GFVSTSILTSSDGL-FGD--NVEENRVTEAPAPRPQDTPGYKPLYEQLQERKEKKDSEWKEKNNP-FAPPKGLDEEELDYIQDLE 92
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A485KNK4_9STRA (Aste57867_9599 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNK4_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 5.230e-6 Identity = 39/105 (37.14%), Postives = 65/105 (61.90%), Query Frame = 3 Query: 48 GFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFA 362 GFVSTSVL S DG+ FGD +E + + + A + RPL+++L+E+++ + + + FAPPKGLD+E++TFL ++EE ++ + K + E+ FA Sbjct: 37 GFVSTSVLSSSDGL-FGD--NVEEVRITDRPESADKVDSRPLYDRLKEQKDQRDADWKDKNNP-FAPPKGLDDEEITFLYALEEDQKKIQDDIKRQHDAELAQFA 137
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A6G0WDG0_9STRA (FAM192A_Fyv6_N domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDG0_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 5.230e-6 Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 3 Query: 48 GFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAAR----RPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVEEARRAAKKTEKHREVLEIEAFA 362 GFVSTSVL S DG+ FGD EEV+ ++ RPL+E+L+E+++ + ++ E FAPPKGLD+E++ FL+++E ++ ++ K ++ E+E FA Sbjct: 37 GFVSTSVLSSSDGL-FGDN----VEEVRITDRPENNGPEKVDSRPLYERLKEQKDQRDAEWKEKNNP-FAPPKGLDDEEIDFLRNLESDQKKIQEDIKRQQEAELEKFA 139
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Match: A0A024TCV4_9STRA (FAM192A_Fyv6_N domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TCV4_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 3.860e-5 Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 3 Query: 48 GFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAAR---RPLWEQLQEREEAKAEKYDEVRKAIFAPPKGLDEEDVTFLQSVE 296 GFVSTSVL S DG+ FGD EEV+ ++ A + RPL+E+L+E++ A+ + E FAPPKGLD+E++ FL ++E Sbjct: 35 GFVSTSVLSSSDGL-FGDN----VEEVRITDRPESSADKVDYRPLYERLKEQKNARDADWKEKNNP-FAPPKGLDDEEIDFLHTLE 114 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|45747 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_4908 ID=mRNA_4908|Name=jgi.p|Trimin1|45747|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=730bp|location=Sequence derived from alignment at Contig_23:487934..489354+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GGAAGCTGCAATCGTGTGGGAAGCTCACGTGCAATATGACCAGTATAGGCback to top protein sequence of jgi.p|Trimin1|45747 >Trimin1|45747|CE45746_132 ID=Trimin1|45747|CE45746_132|Name=jgi.p|Trimin1|45747|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=216bp MTSIGFVSTSVLESKDGIDFGDEKRLETEEVKEAEKRALEAARRPLWEQLback to top mRNA from alignment at Contig_23:487934..489354+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_4908 ID=mRNA_4908|Name=jgi.p|Trimin1|45747|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1421bp|location=Sequence derived from alignment at Contig_23:487934..489354+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_23:487934..489354+ >mRNA_4908 ID=mRNA_4908|Name=jgi.p|Trimin1|45747|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=648bp|location=Sequence derived from alignment at Contig_23:487934..489354+ (Tribonema minus UTEX_B_3156 )back to top |