mRNA_18318 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A835Z1A1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1A1_9STRA) HSP 1 Score: 172 bits (436), Expect = 1.340e-54 Identity = 83/83 (100.00%), Postives = 83/83 (100.00%), Query Frame = 1
Query: 1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY
Sbjct: 1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 83
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A836CJE6_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJE6_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.140e-19 Identity = 47/83 (56.63%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
QVDVYESE TR + + R A A GK E WVFHGT N IM GGF++GGVD G V NG A G GVY AT P TP+ Y
Sbjct: 4 QVDVYESEITRQKYAAARGALAFDGKDTHELWVFHGTAPENVPRIMCGGFRIGGVDVG--VTNGTALGLGVYAATGPDTPIHY 84
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A836CJ85_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ85_9STRA) HSP 1 Score: 84.3 bits (207), Expect = 4.580e-19 Identity = 44/84 (52.38%), Postives = 55/84 (65.48%), Query Frame = 1
Query: 1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGV-DAGIPVVNGAAYGHGVYMATTPLTPMAY 249
QVDVYESETTR + + R + A G E+WVFHGT N IM GF+VGGV + G+ + +GA +G GVY AT P TP+AY
Sbjct: 1 QVDVYESETTRQRYAAARESLAFDGIDTTESWVFHGTAHENVPKIMCAGFRVGGVGEGGVAIKHGATFGTGVYAATGPATPIAY 84
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A836CJ18_9STRA (PARP catalytic domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ18_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 3.700e-18 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
QVDVYESETTR + + R + A G E+WVFHGT N IM GF+VGG + + + +GA+YG+GVY AT P TP+ Y
Sbjct: 1 QVDVYESETTRQRYAAARKSLAFDGVDTTESWVFHGTARENIAKIMCAGFRVGG-EGCVAIKHGASYGNGVYAATGPATPVTY 82
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A0M0K0K1_9EUKA (Poly [ADP-ribose] polymerase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K0K1_9EUKA) HSP 1 Score: 66.6 bits (161), Expect = 5.530e-11 Identity = 38/83 (45.78%), Postives = 42/83 (50.60%), Query Frame = 1
Query: 1 QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
QVDVY+S F A F WVFHGT N I GGF+V D + NGA YGHGVY AT P TPM+Y
Sbjct: 292 QVDVYDSPNVEKTFQDKEADFHAKKVDTKRIWVFHGTAEDNIEKICCGGFRVAHGDQ---IKNGAVYGHGVYTATGPQTPMSY 371
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A7S2TX84_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TX84_9EUKA) HSP 1 Score: 65.1 bits (157), Expect = 9.360e-11 Identity = 33/82 (40.24%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 4 VDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
+ VY + F + F+R G WVFHGT R IM GFKVGG++ ++NG+A+G+G+Y ATTP P+ Y
Sbjct: 108 ITVYNNPKLLKRFEKKTSEFSRDGISTKRVWVFHGTQERLVETIMMQGFKVGGIET--KIINGSAFGYGIYTATTPHYPLQY 187
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A812Q5F2_SYMMI (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812Q5F2_SYMMI) HSP 1 Score: 62.8 bits (151), Expect = 1.070e-9 Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 4 VDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLP-IMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
V+ E R + + R F + G + E VFHGT + + I+ GFKVGGVDAGIPV +GA YG GVY A P T Y
Sbjct: 77 VEYTEDSPVRRDYEACREEFLQKGLSVVEVLVFHGTPRGHTVRNIVTDGFKVGGVDAGIPVTHGAVYGPGVYTAIGPATAQHY 159
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A8H6T712_9AGAR (PARP catalytic domain-containing protein n=2 Tax=Mycena kentingensis (nom. inval.) TaxID=1325293 RepID=A0A8H6T712_9AGAR) HSP 1 Score: 52.0 bits (123), Expect = 8.070e-6 Identity = 26/59 (44.07%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 73 GKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
GK E +FHGT A N I++GGF++GG+ + NGAA GHG+Y+A+ P + Y
Sbjct: 255 GKEPEELEMFHGTAAHNIDSILSGGFRIGGIGRH-KISNGAALGHGIYLASNPAMSLGY 312
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A8H5D5E0_9AGAR (PARP catalytic domain-containing protein n=1 Tax=Tetrapyrgos nigripes TaxID=182062 RepID=A0A8H5D5E0_9AGAR) HSP 1 Score: 51.6 bits (122), Expect = 1.130e-5 Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 73 GKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
G+ E +FHGT RN I+ GGF++GG++ G P+ NGAA GHG+Y+A M Y
Sbjct: 330 GEEPKELMLFHGTQERNIDLILKGGFRIGGMN-GHPLTNGAACGHGIYLAKHGAMSMGY 387
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Match: A0A5E3X8Z8_9AGAM (PARP catalytic domain-containing protein n=1 Tax=Peniophora sp. CBMAI 1063 TaxID=718367 RepID=A0A5E3X8Z8_9AGAM) HSP 1 Score: 50.4 bits (119), Expect = 2.840e-5 Identity = 25/59 (42.37%), Postives = 37/59 (62.71%), Query Frame = 1
Query: 73 GKPLGETWVFHGTHARNKLPIMAGGFKVGGVDAGIPVVNGAAYGHGVYMATTPLTPMAY 249
G+P E +FHGT N I++ GF++GG+ V+NG A+G G+Y+AT+ T M Y
Sbjct: 292 GEPPQEQHLFHGTRQANIDSILSSGFRIGGI-GNHKVINGTAFGTGIYLATSAQTSMQY 349 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142589 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_18318 ID=mRNA_18318|Name=jgi.p|Trimin1|142589|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_221:48844..49092+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CAGGTGGACGTGTATGAGAGCGAGACGACGCGCGACGCATTCTACTCCACback to top protein sequence of jgi.p|Trimin1|142589 >Trimin1|142589|gw1.221.9.1 ID=Trimin1|142589|gw1.221.9.1|Name=jgi.p|Trimin1|142589|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=83bp QVDVYESETTRDAFYSTRAAFARAGKPLGETWVFHGTHARNKLPIMAGGFback to top mRNA from alignment at Contig_221:48844..49092+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_18318 ID=mRNA_18318|Name=jgi.p|Trimin1|142589|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=249bp|location=Sequence derived from alignment at Contig_221:48844..49092+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_221:48844..49092+ >mRNA_18318 ID=mRNA_18318|Name=jgi.p|Trimin1|142589|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=249bp|location=Sequence derived from alignment at Contig_221:48844..49092+ (Tribonema minus UTEX_B_3156 )back to top |