mRNA_6436 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: A0A835Z365_9STRA (ClpP/crotonase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z365_9STRA) HSP 1 Score: 645 bits (1664), Expect = 4.850e-231 Identity = 378/378 (100.00%), Postives = 378/378 (100.00%), Query Frame = 1
Query: 1 MTLPEQVSGEEFDAFKDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPASLLPLLRPLEQQLHRLPPLLLLQQPFMLLALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPLVDVQLRHVAAWASTDDENWAQRRRVVV 1134
MTLPEQVSGEEFDAFKDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPASLLPLLRPLEQQLHRLPPLLLLQQPFMLLALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPLVDVQLRHVAAWASTDDENWAQRRRVVV
Sbjct: 1 MTLPEQVSGEEFDAFKDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPASLLPLLRPLEQQLHRLPPLLLLQQPFMLLALPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPRPLVDVQLRHVAAWASTDDENWAQRRRVVV 378
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: D7FNG8_ECTSI (Enoyl-CoA hydratase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNG8_ECTSI) HSP 1 Score: 226 bits (577), Expect = 1.390e-68 Identity = 132/226 (58.41%), Postives = 156/226 (69.03%), Query Frame = 1
Query: 163 MMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVL--AERAAFISVWGGDHNRSVLEKGVKP 834
MMV+L+DAV +E+W RGVAL++ G FCAGADL+LAR HL T DGR MCALM+DTL RLR LPL+SVAA+ G A+GGGAEL+T+CD+RV ++IRFVQVKMGVSTGWGG ARL +VG R ALRLLAW L+A A LGLVD V EE A +A FL + TQ AVRAVK VAAA +P + L AE F ++WGG HNR LE P
Sbjct: 1 MMVQLSDAVDELEQWDRGVALVVHGMGGN-FCAGADLSLAREHLRTGADGRSMCALMSDTLTRLRRLPLISVAAIDGAAIGGGAELATSCDFRVAGPESNIRFVQVKMGVSTGWGGGARLVGLVGRRAALRLLAWSPPLAADEAAALGLVDAVAEEEGGALAAAREFLGGVLTQDAHEAVRAVKRVVAAAD-VPVSDRLHRAEADEFSALWGGAHNRMALEPPSSP 224
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: A0A7S4B265_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B265_CHRCT) HSP 1 Score: 216 bits (551), Expect = 9.660e-64 Identity = 135/279 (48.39%), Postives = 173/279 (62.01%), Query Frame = 1
Query: 10 PEQVSGEEFDAFKDRL-SVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGED-AETSANTFLEPLTTQPNWRA-VRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVKPA 837
P +S AFK L S+ +G V D A+G+A + LRN RNAL G MM++LADAV +E W +GVAL++T G RAFCAGADL LA+ + TP G+LM LM++TL R+ LP++SV AV G A GGGAEL+TA D+RV +S A RFVQ +M VSTGWGGA RLT IVG RQALRL + A AA GL D V EG + A+ + F+ P RA +R++KAAVAA S++ AE AF SVW N ++K ++ A
Sbjct: 19 PRALSRRCMQAFKASLRSLPSSGRVQLQTDQATGVAVLTLRNEARRNALCGTMMIQLADAVHELESWKQGVALVVTGAG-RAFCAGADLHLAQKVINTPEQGQLMSELMSETLDRIAQLPMISVCAVNGAAFGGGAELTTATDWRVFASGATARFVQTQMAVSTGWGGAGRLTGIVGRRQALRLFLHSPLIDAEAALASGLADAVAPEGVNPADAAMELFVTPALRAAGSRAAIRSIKAAVAAHSSVSAGARRAETQAFASVWASADNLRAVQKALERA 296
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: UPI0009E4858E (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E4858E) HSP 1 Score: 207 bits (527), Expect = 4.130e-60 Identity = 123/265 (46.42%), Postives = 171/265 (64.53%), Query Frame = 1
Query: 46 KDRLSVLGAGHVHYTM--DDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVL-AERAAFISVWGGDHNRSVLEKGVK 831
+ + VLG+G V + G A I L NP+ +NAL+G MMV LA+AV +E+W G ALIL + +FC+GADL++ + + TP +G LMCA M TL RL +LPL+SVAAV+G A+GGGAEL+TACD+R+MS A IRFVQVKMG++ GWGG ARL +++G ++AL+LL GE++ S QLGLVD G+D TS +L + + VRA+K V+A ++ L ER+ F ++WGG+ N+ LE K
Sbjct: 42 RQKFKVLGSGDVTLIKLTGEQEGTAVISLLNPERKNALTGYMMVRLAEAVDELEQWEHGTALILHGS-EGSFCSGADLSIVKT-INTPREGNLMCAFMQRTLSRLESLPLISVAAVEGRALGGGAELTTACDFRLMSKDAEIRFVQVKMGLTPGWGGGARLVKLLGKQKALQLLGKGEKVDLSYGHQLGLVDGELPLGQDVVTSCCDWLSEFL-KADTSVVRAIKDVVSAGHDSTLKDALDIERSIFTTLWGGEANKQALENAKK 303
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: A0A7S3F357_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3F357_9EUKA) HSP 1 Score: 205 bits (522), Expect = 1.030e-59 Identity = 130/262 (49.62%), Postives = 170/262 (64.89%), Query Frame = 1
Query: 43 FKDRLSVLG-AGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNH-LTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFL-EP-LTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVL 816
F RLS L G V T+ S +A + L NP+ RNA+SG MM LADAV +E W+ GVA+ILT EG FC+G D LAR +++P LM LMTDTLHRLR LPL+SVAA+ G A+GGGAEL+TA D+RVM+S A +RFV +MG +TGWGG ARL ++G +AL+LLA G L +AA LGL D V + GE A ++A L +P + + +++RA+K+A A+AS IP E E A VWG + NR+ L
Sbjct: 14 FVQRLSALPHPGRV--TLKKESSVAILTLSNPERRNAMSGPMMAGLADAVKELEMWNEGVAVILTGEGG-TFCSGLDYELARGGTVSSPQQATLMSQLMTDTLHRLRQLPLLSVAAIDGFAIGGGAELTTATDWRVMASDAQVRFVHARMGATTGWGGGARLVGMLGRARALKLLAHGTPLDGNAAFALGLCDGVAQAGETAASAAARLLIDPAIAHSASVQSLRAIKSAFASASDIPPEVRAEETQAIGRVWGSEANRNAL 272
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: UPI00145572EB (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145572EB) HSP 1 Score: 201 bits (510), Expect = 2.630e-57 Identity = 119/276 (43.12%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 13 EQVSGEEFDAFKDRLSV--LGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGD-RAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLA-ERAAFISVWGGDHNRSVLEKGV 828
E V E F+ +RL++ L G+++ D SG+A I + NP S NA++G MMVEL+D VA +E+WH+G ALIL + + + FCAGADL A+ L+ P G +MC M + L RL+ LPL+S AAV G A+GGGAE++TACD+R+M+ ++ I+F+ KMG+S GWGG RL ++G ++ALRL+A E ++A A +L LVD V G D A T+L+ ++P V+++K V AAS +P++ L+ E+ F +W G N + L K +
Sbjct: 53 EFVPIEVFNEQVERLNLKELNGGNLYLEKDQESGIATITISNPSSANAITGSMMVELSDMVAELEKWHKGKALILYGDPEGKHFCAGADLKTAQA-LSNPQAGVMMCLYMQNILSRLQRLPLISAAAVSGNAIGGGAEITTACDFRLMTPSSKIQFIHTKMGLSPGWGGGTRLVNLIGPQKALRLMAGAEVVNAEEAVRLNLVDDVIPGG-DILKQATTWLDKYISEP-VEVVQSIKTVVTAASQLPQDQALSKEKDVFGGLWRGPANNAALAKSL 325
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: A0A8K0ENQ4_BRALA (ECHS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0ENQ4_BRALA) HSP 1 Score: 196 bits (497), Expect = 1.150e-55 Identity = 116/260 (44.62%), Postives = 157/260 (60.38%), Query Frame = 1
Query: 55 LSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAA-FISVWGGDHNRSVLEKGVK 831
LS G G V T DDASGLA + L NP+ NA++G MM++L D V ++ W G ALI+ +G R+FC GADL + N L + GR MC+ M TL L LPL+SVAA+ GPA+GGGAEL TA D+RVM+ A I+FVQ +G+ GWGG RLTR+VG +AL LL+ G + A ++GL + G D + +L+ T + VRAVK V A + +P E LA+ A F++VWGG + + K +K
Sbjct: 46 LSAAGGGAVDLTKDDASGLAVLTLNNPERLNAVTGHMMLQLGDIVNDLKEWKNGKALIVRGKG-RSFCPGADLNMVYNMLDSK-QGREMCSFMHRTLTELHRLPLISVAAIDGPAIGGGAELCTATDFRVMTERADIKFVQALLGIVPGWGGGTRLTRLVGRTRALDLLSSGRTIRPEEAVEIGLASWIIPTGRDVVEATTEWLQRYT-RGRTEVVRAVKNVVVAGTELPVEEALAKEAEQFVNVWGGPAHVEAILKSMK 302
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: A0A6P4ZPQ6_BRABE (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZPQ6_BRABE) HSP 1 Score: 195 bits (495), Expect = 2.270e-55 Identity = 116/260 (44.62%), Postives = 157/260 (60.38%), Query Frame = 1
Query: 55 LSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAA-FISVWGGDHNRSVLEKGVK 831
LS G G V T DD SGLA + L NP+ NA++G MM++LAD V ++ W G ALI+ +G FC GADL + RN L + GR MCA M TL L LPL+SV A+ GPA+GGGAEL TA D+RVM+ AHIRFVQ +G+ GWGG RLTR+VG +AL LL+ G +S A ++GL + + G D + +++ T + VRAVK V A + + E LAE A F++VWGG ++ + + +
Sbjct: 46 LSSFGGGAVDLTKDDVSGLAVLTLNNPERLNAVTGNMMLQLADIVNDLKEWKGGKALIVHGKGH-TFCTGADLNMVRNMLDSK-HGREMCAFMHKTLTELHRLPLISVTAIDGPAIGGGAELCTATDFRVMTEQAHIRFVQALLGIVPGWGGGTRLTRLVGRTRALDLLSSGRAISPEEAVEMGLANWMIPTGHDVVEATTDWVQKYT-KGKPEVVRAVKNVVVAGAEMSLEESLAEEAEQFVNVWGGPAHQEAMLRNAR 302
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: UPI00188586EE (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI00188586EE) HSP 1 Score: 194 bits (493), Expect = 3.370e-55 Identity = 118/263 (44.87%), Postives = 159/263 (60.46%), Query Frame = 1
Query: 46 KDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGDRAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVD-LVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLAERAAFISVWGGDHNRSVLEKGVK 831
K +LS G G V ++DD +G+A + L NPD +NALSGRMM +L +AVAA+ERW G L+L A GD AFC+G DL+ R ++ P DG M A M D L RL ALPLVSV + G A+GGGAEL+ A D+R+ ++ A ++FVQ +MG+ TGWGG ARL ++G R AL LL ++A A +LGL D LV D A +L P + VR+VK + + E ER F +WGG+ N+ L+K +K
Sbjct: 35 KQQLSQYGGGSVDLSLDDVTGMASLRLNNPDRKNALSGRMMAQLEEAVAALERWPAGRGLLLHAAGD-AFCSGGDLSTVRA-ISRPVDGMRMSAFMQDALARLAALPLVSVVVLAGRALGGGAELALAADFRLWTAGARLQFVQARMGLLTGWGGGARLAAMLGPRVALDLLTSCRPVAADEALRLGLADALVAPPDGDPLQFARDWLAPRVAH-DVAVVRSVKRMIVNSRGDMSELWRKERELFAPLWGGEANKKALDKNIK 294
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Match: A0A8B7YI19_ACAPL (ethylmalonyl-CoA decarboxylase-like n=1 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7YI19_ACAPL) HSP 1 Score: 195 bits (496), Expect = 3.530e-55 Identity = 119/276 (43.12%), Postives = 177/276 (64.13%), Query Frame = 1
Query: 13 EQVSGEEFDAFKDRLSV--LGAGHVHYTMDDASGLARIELRNPDSRNALSGRMMVELADAVAAVERWHRGVALILTAEGD-RAFCAGADLALARNHLTTPWDGRLMCALMTDTLHRLRALPLVSVAAVKGPAVGGGAELSTACDYRVMSSAAHIRFVQVKMGVSTGWGGAARLTRIVGSRQALRLLAWGEQLSASAAQQLGLVDLVTEEGEDAETSANTFLEPLTTQPNWRAVRAVKAAVAAASAIPEENVLA-ERAAFISVWGGDHNRSVLEKGV 828
E V E F+ +RL++ L G + + +D +GLA I + N + NA+SG MMV+L+D VA +E+W RG A+IL + + + FC+GADL L++P G +MC M + L RL+ LPL+SVAAV G AVGGGAE+ TACD+R++S ++ I+F+ KMG+S GWGG RL R+VG ++AL+LLA GE + A+ + LGL D + + G+D A+ +L+ T+QP VRA+K V AAS +P + L+ E+ F +W G N+ L + +
Sbjct: 55 EFVPSEVFNERVERLNLKELNGGSLRLSKNDVTGLATITISNVTNANAMSGSMMVDLSDIVADLEKWQRGKAVILHGDPEGKNFCSGADLKTTEA-LSSPQAGVVMCLFMQNILTRLQQLPLISVAAVSGSAVGGGAEIITACDFRLVSPSSVIQFIHCKMGLSPGWGGGTRLVRLVGPQKALKLLAGGESIRATESLGLGLADDLIQ-GDDIIKQASDWLDKYTSQP-VEVVRAMKNVVTAASQLPPDKALSKEKDIFGGLWKGPANKEALARAL 327 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348326 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6436 ID=mRNA_6436|Name=jgi.p|Trimin1|348326|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1317bp|location=Sequence derived from alignment at Contig_22:1089946..1100176- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGACCCTGCCGGAGCAGGTGTCCGGAGAGGAATTTGATGCGTTCAAGGAback to top protein sequence of jgi.p|Trimin1|348326 >Trimin1|348326|estExt_Genemark1.C_Ctg_220124 ID=Trimin1|348326|estExt_Genemark1.C_Ctg_220124|Name=jgi.p|Trimin1|348326|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=379bp MTLPEQVSGEEFDAFKDRLSVLGAGHVHYTMDDASGLARIELRNPDSRNAback to top mRNA from alignment at Contig_22:1089946..1100176- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6436 ID=mRNA_6436|Name=jgi.p|Trimin1|348326|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=10231bp|location=Sequence derived from alignment at Contig_22:1089946..1100176- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_22:1089946..1100176- >mRNA_6436 ID=mRNA_6436|Name=jgi.p|Trimin1|348326|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1137bp|location=Sequence derived from alignment at Contig_22:1089946..1100176- (Tribonema minus UTEX_B_3156 )back to top |