mRNA_6408 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|348314
Unique Name	mRNA_6408
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A835Z0P4_9STRA (Store-operated calcium entry-associated regulatory factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0P4_9STRA)

HSP 1 Score: 512 bits (1318), Expect = 3.250e-180
Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 3

Query:   18 MRIRSLLLGLGCCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELRVAPGAAXXXXXXXXXXXXXXXSGRAQPHGXXXXXXXXAHGGEKAEGVSFVRFTLLCLVGWLLLKLLTHRAPAPAAARSGFEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSNFRRRFXXXGPRXXXXXXXXXXXXXXXXFNIPGMPPPRAAAPDPTSCGPQPRASAAGSGPGFWSGLAAGSGLGRSSSGGGLHAETSFASTGRR 1040
            MRIRSLLLGLGCCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELRVAPGAAXXXXXXXXXXXXXXXSGRAQPHGXXXXXXXXAHGGEKAEGVSFVRFTLLCLVGWLLLKLLTHRAPAPAAARSGFEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSNFRRRFXXXGPRXXXXXXXXXXXXXXXXFNIPGMPPPRAAAPDPTSCGPQPRASAAGSGPGFWSGLAAGSGLGRSSSGGGLHAETSFASTGRR
Sbjct:    1 MRIRSLLLGLGCCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELRVAPGAAXXXXXXXXXXXXXXXSGRAQPHGXXXXXXXXAHGGEKAEGVSFVRFTLLCLVGWLLLKLLTHRAPAPAAARSGFEGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWSNFRRRFXXXGPRXXXXXXXXXXXXXXXXFNIPGMPPPRAAAPDPTSCGPQPRASAAGSGPGFWSGLAAGSGLGRSSSGGGLHAETSFASTGRR 341

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A1W0W8B3_HYPDU (Store-operated calcium entry-associated regulatory factor n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0W8B3_HYPDU)

HSP 1 Score: 145 bits (365), Expect = 9.410e-37
Identity = 66/118 (55.93%), Postives = 83/118 (70.34%), Query Frame = 3

Query:   51 CCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELRV 404
            CC +W   N     +V L+D+QT+TL  D  TTGRR+RP+PQL CRG G  G  A+ P  VQCYNRGSDG DVQWEC+ +M   +SFG+ +V+CEGY  PDDP IL+GSC L+Y L +
Sbjct:   23 CCQSWGHGNK---NRVLLSDIQTLTLHRDKMTTGRRNRPIPQLSCRG-GSAGCTAFTPNVVQCYNRGSDGMDVQWECKCDMSKDFSFGQIEVVCEGYDSPDDPTILKGSCGLEYYLEL 136

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A1D2N1N0_ORCCI (Store-operated calcium entry-associated regulatory factor n=1 Tax=Orchesella cincta TaxID=48709 RepID=A0A1D2N1N0_ORCCI)

HSP 1 Score: 144 bits (362), Expect = 2.290e-36
Identity = 70/128 (54.69%), Postives = 85/128 (66.41%), Query Frame = 3

Query:   21 RIRSLLLGLGCCAAWTGANAA--APEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYEL 398
            R+ S+LL   C A  +G   A    +KV+L DVQ +TL+    TTGRRS PVPQL C G    GA  + P  VQCYN+GSDG DVQWEC+ +M + Y FGK  V CEGY YPDDPY+L+GSC L+Y L
Sbjct:    3 RLTSVLLLALCVAQLSGTGFAWGGNDKVKLNDVQVLTLYTGAMTTGRRSSPVPQLRCVGGSANGA--FVPQTVQCYNKGSDGYDVQWECKTDMDNAYKFGKISVTCEGYDYPDDPYVLKGSCGLEYTL 128

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A6H5JCU3_9PHAE (Store-operated calcium entry-associated regulatory factor n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCU3_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 1.770e-35
Identity = 70/131 (53.44%), Postives = 83/131 (63.36%), Query Frame = 3

Query:   24 IRSLLLGLG--CCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELRVAP 410
            + SL+LG G    AA T + A    ++ L  V+ +TL +   T GRRS PVPQL CRG    G   W P  VQCYN GSDG D  W+C ANMPDGYSF   +V CEGY YPDDPYIL+ SCQL Y L+ +P
Sbjct:    8 LASLVLGAGELVNAATTRSQARNDGRILLDAVKVVTLHDSRDTAGRRSAPVPQLVCRG----GCQEWTPQVVQCYNMGSDGTDAAWKCEANMPDGYSFSSVEVGCEGYDYPDDPYILKDSCQLIYSLKASP 134

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A196SFE0_BLAHN (Store-operated calcium entry-associated regulatory factor n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SFE0_BLAHN)

HSP 1 Score: 139 bits (350), Expect = 1.790e-35
Identity = 68/123 (55.28%), Postives = 88/123 (71.54%), Query Frame = 3

Query:   33 LLLGLGCCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAG-AWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYEL 398
            LLLG  CC A+   NA  P +V LT VQT+T  +   TTGRRSRP+PQ++C G   G AG ++ P  +QCYNRG+DG DVQWEC+A + +G S G+T V CEGY YP+DPYIL GSC ++++L
Sbjct:   12 LLLG-ACCVAYN-YNAYNPNRVLLTSVQTLTFSKSQYTTGRRSRPIPQMKCTG---GSAGCSYAPATMQCYNRGTDGRDVQWECKAELDNGVSLGETIVSCEGYDYPEDPYILAGSCGVEFKL 129

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A6T5NZL0_HETAK (Store-operated calcium entry-associated regulatory factor n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5NZL0_HETAK)

HSP 1 Score: 140 bits (353), Expect = 2.220e-35
Identity = 70/132 (53.03%), Postives = 86/132 (65.15%), Query Frame = 3

Query:   15 AMRIRSLLLGLGCCAAWTGANA---AAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELR 401
            AM + SL+  +   AAW   +A     P+KV++ DV+ ITL +   TTGRR+ PVPQLEC G    G G W P  VQC N G+DG D  W+C A MP GY FG+ QV CEGY +P+DPYIL GSCQL YEL+
Sbjct:   10 AMLLLSLIAHI---AAWDTPSAYKQGPPQKVKIADVEVITLQKGRMTTGRRNSPVPQLECMG----GCGDWTPDVVQCRNVGTDGVDANWKCDAEMPQGYRFGQIQVGCEGYDHPEDPYILPGSCQLMYELK 134

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A6P7WAK4_IXOSC (Store-operated calcium entry-associated regulatory factor n=11 Tax=Ixodes TaxID=6944 RepID=A0A6P7WAK4_IXOSC)

HSP 1 Score: 140 bits (353), Expect = 2.690e-35
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 3

Query:    6 TLFAMRIRSLLLGLGCCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWR-PPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYEL 398
            +LF+  +   LL LGC +    A+     KV+L+DV+T+TL     TTGRRS P+PQL+C G   G AG    PP VQCYN+GSDG D+QWEC+A++P    FG  +V CEGY YPDDPYIL+GSC L+Y+L
Sbjct:    7 SLFSRFVWIGLLLLGCASLAVHAH----RKVKLSDVKTLTLSHGSYTTGRRSSPIPQLQCVG---GSAGCTSLPPTVQCYNKGSDGIDIQWECKADLPKSLKFGHIEVACEGYDYPDDPYILQGSCGLEYKL 131

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: H9G658_ANOCA (Store-operated calcium entry-associated regulatory factor n=1 Tax=Anolis carolinensis TaxID=28377 RepID=H9G658_ANOCA)

HSP 1 Score: 139 bits (351), Expect = 5.490e-35
Identity = 69/129 (53.49%), Postives = 84/129 (65.12%), Query Frame = 3

Query:   24 IRSLLLGLGCCAAWTGANA--AAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYELRV 404
            +RS  L L      TGA    A PE+V L +VQ +TL+       RRS PVPQL+C G G  G GA+ P  VQCYN+G DG DVQWEC+A++   Y FGK +V CEGY YPDDPYIL+GSC L+Y L +
Sbjct:    1 MRSRWLALPLLVVLTGAGLVWAQPERVLLREVQALTLYPGKNANYRRSSPVPQLQCTG-GSAGCGAYTPDVVQCYNKGWDGYDVQWECKADLDAAYRFGKIEVSCEGYDYPDDPYILKGSCGLEYTLEL 128

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A6P7WQB0_IXOSC (Store-operated calcium entry-associated regulatory factor n=3 Tax=Ixodes scapularis TaxID=6945 RepID=A0A6P7WQB0_IXOSC)

HSP 1 Score: 140 bits (353), Expect = 7.110e-35
Identity = 70/132 (53.03%), Postives = 90/132 (68.18%), Query Frame = 3

Query:    6 TLFAMRIRSLLLGLGCCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWR-PPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYEL 398
            +LF+  +   LL LGC +    A+     KV+L+DV+T+TL     TTGRRS P+PQL+C G   G AG    PP VQCYN+GSDG D+QWEC+A++P    FG  +V CEGY YPDDPYIL+GSC L+Y+L
Sbjct:    7 SLFSRFVWIGLLLLGCASLAVHAH----RKVKLSDVKTLTLSHGSYTTGRRSSPIPQLQCVG---GSAGCTSLPPTVQCYNKGSDGIDIQWECKADLPKSLKFGHIEVACEGYDYPDDPYILQGSCGLEYKL 131

[Close]

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Match: A0A0R3QLD1_9BILA (Store-operated calcium entry-associated regulatory factor n=1 Tax=Brugia timori TaxID=42155 RepID=A0A0R3QLD1_9BILA)

HSP 1 Score: 136 bits (343), Expect = 8.990e-35
Identity = 62/102 (60.78%), Postives = 73/102 (71.57%), Query Frame = 3

Query:   93 KVRLTDVQTITLFEDGQTTGRRSRPVPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGKTQVICEGYAYPDDPYILRGSCQLQYEL 398
            KVRL DV T+TL+ D  TTGRRS P+PQ++C G      G + P  VQCYNRG DG DVQWEC+A M D Y FG+ ++ CEGY Y DDPYILRGSC L+Y L
Sbjct:   53 KVRLADVTTLTLYRDKYTTGRRSSPIPQIQCVGGSA--KGKFEPRVVQCYNRGYDGIDVQWECKAEMGDQYEFGEIRISCEGYDYADDPYILRGSCGLKYSL 152

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|348314 vs. uniprot

BLAST of jgi.p|Trimin1|348314 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835Z0P4_9STRA	3.250e-180	100.00	Store-operated calcium entry-associated regulatory...	[more]
A0A1W0W8B3_HYPDU	9.410e-37	55.93	Store-operated calcium entry-associated regulatory...	[more]
A0A1D2N1N0_ORCCI	2.290e-36	54.69	Store-operated calcium entry-associated regulatory...	[more]
A0A6H5JCU3_9PHAE	1.770e-35	53.44	Store-operated calcium entry-associated regulatory...	[more]
A0A196SFE0_BLAHN	1.790e-35	55.28	Store-operated calcium entry-associated regulatory...	[more]
A0A6T5NZL0_HETAK	2.220e-35	53.03	Store-operated calcium entry-associated regulatory...	[more]
A0A6P7WAK4_IXOSC	2.690e-35	53.03	Store-operated calcium entry-associated regulatory...	[more]
H9G658_ANOCA	5.490e-35	53.49	Store-operated calcium entry-associated regulatory...	[more]
A0A6P7WQB0_IXOSC	7.110e-35	53.03	Store-operated calcium entry-associated regulatory...	[more]
A0A0R3QLD1_9BILA	8.990e-35	60.78	Store-operated calcium entry-associated regulatory...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_22	contig	Contig_22:856135..862806 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|348314\|estExt_Genemark1.C_Ctg_220100
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0008150,GO:0010959,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0032879,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0051049,GO:0051924,GO:0065007,GO:0098827,GO:2001256
Preferred name	TMEM66
Description	regulation of store-operated calcium entry
COG category	S
Max annot lvl	33208\|Metazoa
EggNOG OGs	28KQW@1\|root,2QT6Y@2759\|Eukaryota,38PN7@33154\|Opisthokonta,3BDYH@33208\|Metazoa,3CSU9@33213\|Bilateria,489E2@7711\|Chordata,497RR@7742\|Vertebrata
Evalue	2.95e-36
Seed ortholog	28377.ENSACAP00000002256
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	Protein of unknown function DUF1183, TMEM66
Ec32 ortholog	Ec-01_009820.2
TranscriptId	348636
Track	FilteredModels1
ProteinId	348314

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348314	gene_6408	Tribonema minus UTEX_B_3156	gene	Contig_22 856135..862806 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|348314	Trimin1\|348314\|estExt_Genemark1.C_Ctg_220100	Tribonema minus UTEX_B_3156	polypeptide	Contig_22 856152..862750 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_6408_1	exon_6408_1	Tribonema minus UTEX_B_3156	exon	Contig_22 856135..856218 +
exon_6408_2	exon_6408_2	Tribonema minus UTEX_B_3156	exon	Contig_22 857512..857750 +
exon_6408_3	exon_6408_3	Tribonema minus UTEX_B_3156	exon	Contig_22 859805..860126 +
exon_6408_4	exon_6408_4	Tribonema minus UTEX_B_3156	exon	Contig_22 861293..861490 +
exon_6408_5	exon_6408_5	Tribonema minus UTEX_B_3156	exon	Contig_22 862423..862558 +
exon_6408_6	exon_6408_6	Tribonema minus UTEX_B_3156	exon	Contig_22 862687..862806 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_6408	UTR5_6408	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_22 856135..856151 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_6408	CDS_6408	Tribonema minus UTEX_B_3156	CDS	Contig_22 856152..856218 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_6408	UTR3_6408	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_22 862751..862806 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_22:856135..862806+
coding sequence from alignment at Contig_22:856135..862806+

spliced messenger RNA

>mRNA_6408 ID=mRNA_6408|Name=jgi.p|Trimin1|348314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1099bp|location=Sequence derived from alignment at Contig_22:856135..862806+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CACACACACTTTTTGCGATGCGGATAAGGAGCTTATTGCTGGGGTTGGGT
TGCTGCGCTGCCTGGACAGGAGCCAATGCGGCAGCGCCCGAGAAAGTGCG
CCTCACAGACGTGCAGACCATCACGCTGTTTGAAGACGGCCAGACGACGG
GGCGCCGCAGCCGCCCCGTGCCGCAGCTGGAGTGCCGCGGCAAGGGCTGC
GGCGGCGCGGGGGCGTGGCGCCCGCCCGCCGTGCAGTGCTACAACAGGGG
GTCCGACGGCGCCGACGTGCAGTGGGAGTGCCGCGCGAACATGCCGGACG
GCTACAGCTTCGGCAAGACGCAGGTGATCTGCGAGGGGTACGCCTACCCC
GATGACCCCTACATACTGCGCGGCTCCTGCCAGCTACAGTATGAGCTGCG
CGTCGCGCCCGGCGCCGCCGCCGCCGCCGCCGCCGCCAGCGGCAGCAGCG
CGCCGCCGCGCGGCAGCGGCAGGGCGCAGCCGCACGGCCGCGGCGGCGGC
GCGGCGGCAGCGGCGCACGGAGGGGAGAAGGCAGAGGGCGTGAGCTTTGT
GCGCTTCACGCTGCTGTGCCTCGTGGGCTGGCTGCTGCTGAAGCTGCTGA
CGCACCGCGCGCCGGCGCCCGCGGCCGCGCGCTCGGGGTTCGAAGGCGGA
GGTGCGACGTCCTCCGCGCAAGGATGGGGCGGCGGCGGAGGCGGCGGCGG
CAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCGGGCGGTGCGGGAG
GGGGTTGGAGCAACTTCAGGAGGCGGTTCGGCGGCGGCGGCCCGCGCGGC
GGCGGCGGCGAAGGCAGCGGCGGCACCGGCTTCATGGGCACAGGCTTCAA
CATCCCCGGCATGCCGCCGCCGCGCGCCGCCGCGCCGGACCCAACCAGCT
GCGGGCCGCAGCCTCGCGCCAGTGCTGCCGGCAGCGGGCCCGGGTTCTGG
TCGGGGCTGGCAGCGGGGTCCGGCCTCGGCCGCAGCAGCAGCGGCGGCGG
GCTGCACGCGGAGACGTCGTTTGCGTCAACGGGGCGCCGCTGAGCGCTGA
GATGGGTAGACTCAAAGGGGGAAGGAGGGGGCTGATTAGAGCGACAGGC

protein sequence of jgi.p|Trimin1|348314

>Trimin1|348314|estExt_Genemark1.C_Ctg_220100 ID=Trimin1|348314|estExt_Genemark1.C_Ctg_220100|Name=jgi.p|Trimin1|348314|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=342bp
MRIRSLLLGLGCCAAWTGANAAAPEKVRLTDVQTITLFEDGQTTGRRSRP
VPQLECRGKGCGGAGAWRPPAVQCYNRGSDGADVQWECRANMPDGYSFGK
TQVICEGYAYPDDPYILRGSCQLQYELRVAPGAAAAAAAASGSSAPPRGS
GRAQPHGRGGGAAAAAHGGEKAEGVSFVRFTLLCLVGWLLLKLLTHRAPA
PAAARSGFEGGGATSSAQGWGGGGGGGGSGGGGGGGGGGAGGAGGGWSNF
RRRFGGGGPRGGGGEGSGGTGFMGTGFNIPGMPPPRAAAPDPTSCGPQPR
ASAAGSGPGFWSGLAAGSGLGRSSSGGGLHAETSFASTGRR*

mRNA from alignment at Contig_22:856135..862806+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_6408 ID=mRNA_6408|Name=jgi.p|Trimin1|348314|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6672bp|location=Sequence derived from alignment at Contig_22:856135..862806+ (Tribonema minus UTEX_B_3156 )
CACACACACTTTTTGCGATGCGGATAAGGAGCTTATTGCTGGGGTTGGGT
TGCTGCGCTGCCTGGACAGGAGCCAATGCGGCAGGTAAAGAAGTGTGCCA
CCTTGGGGTTATGAGCTTTCCCCTTGTTGAATTTTGTGGGTCATCGAACA
CATGCAGTACCTGCTTTGCTACAACTTCATGCGCTTGCGCCTGAATACAA
TGCTATCGTCATCCTACGTGTCATGAAGCCCGCATGGCAATTGCCATCCG
GCCACTTGCTTGTCGCAACTTTGTCAAACTCGGAACACTCTCTGGGTAGC
TTTCGCACGCCCAAAGCGATCCCCCAGCGGTCAAATACCTATACAGCTGC
ATTTTACAGCAGTGCCAAGCATGTGGTCGGCGAGAAGTCTAGCAGAAGCA
GAGGTCGGTGAACATTTTTGGTGTCGGAGCTGGTTGGACACTTCGATCAC
TCTGCAGTGACAGCTCATTACTCCTGCTGTGTACCGCCCATGGCATTCTT
GAAATGAAGGCGATGCTTGAACGCGAGAGCTTCGAATCACACATGAACAC
CTACATGGTGAGCTGAACACTTTTGCTGAGCATGAGTGTGCATGCCTGGG
TTCTCCACAGCCTTCCTAGATAGGCTGTCGCTGTCGCTGCAGCCACATTT
CTTGACCGATTGAGCATAATCTTCAGACGTCGCATTACTGTCATACTTCG
AAGTACTTGTTTGCAATACGGAGGAGCGTGCGATGCATACTTGTGCAGCA
AGTGGACAATTGCAACACTCACACCCTCACTTGTTCACCATCCTTGCAGA
ACAGGGGTGCTTGCGAACACCAACACTTCTCAATTTATCACATCAAGTAG
AGACTTTCCACTTGTTCGACTGCACTATCGTGCCTGGCTACCGCAGCCCG
CTGCTCTGCGAACGCCCATGCTATTCCGGCAGAGACGTTTACGAGGCCAC
ATCTGTAGGCACGCGCCCGCGTTTAGTCGCAACACGCCCCCACCACCATC
ATCGCTGTCCGTCGTGCACAGCGCAACGCGAGTCGCCCCGCGCACCCATT
TACTGAACCTGCCAGTCGCGCGCGAGCTGACACAACGCGCCTTGCCCCCC
GCCCTTGAACGTCAGTCGCTTTTCACTGCCGAGCTGCCGCCAACACAGCA
GCGCTCCTCACACATCAATGCTCACACATCAGTGCCGCTGCGTGCGCTGC
CGCCGAAGCAGCCCCCCCCCCCTTCCGCCCTCCCCCCCTGCCGCAACGCG
CTCCGCCGTGCTGCGGAAAGCGCACTTCCCGGCGCTGCTCACGCATGGAC
CTACCTACCTGCCTCTAACACCCGCCCCGCTGCCCGACCCCTTTCCCCTG
CCGCGCGCCGCGCTCCCCTTTTCGCAGCGCCCGAGAAAGTGCGCCTCACA
GACGTGCAGACCATCACGCTGTTTGAAGACGGCCAGACGACGGGGCGCCG
CAGCCGCCCCGTGCCGCAGCTGGAGTGCCGCGGCAAGGGCTGCGGCGGCG
CGGGGGCGTGGCGCCCGCCCGCCGTGCAGTGCTACAACAGGGGGTCCGAC
GGCGCCGACGTGCAGTGGGAGTGCCGCGCGAACATGCCGGACGGCTACAG
CTTCGGCAAGACGCAGGTGCGCTGCGCGCTGTGTATAGGGAGAGAGTAAG
AGGGCTGCTGGCAGGGTAAGGGATAGGGGCGGGGTCACGTTGCAAGGGAG
AAGCCCGCACGTCCGGGTGCGCGTATCGTACACTGGGCGAACATGATGGA
CGGCTACAGCTTCGGGAAGACGCAGGTACCGTTGAACACGGGGTATGAAG
TAGTGCCTTTATGGAGTAGTACCTCCATATGAGGAACAGTTATCTCATGC
GGCCTATAAGGTACCCGCTTCTTGAAGCATTTCGACAGGCATGCATGTAA
GATACCGGGTTTGCTGCATGCATGTAAGTTACTAGGTGTACAGCTTCGGC
AGGACGCAAGTGGGAGTGCCGCGCGAACATGCTGGACGGCTACAGCTTCG
GCAAGACGCAGGTGCGCGCTGCGCGCTGAGCGCTGCCACTTTTTTTTCCT
AGCGAGGGCTGGCACCGCCGCAAGCGAGAAGCCCGTAAGTCCTGGTGCGC
ACATCGTACACTGGGCGAACATGCCGGACGGCTACAGCTTCGGCAAGACG
CAGGTGCGCACCGCGCGCTGAGCACTGCCCCATCACCTAGGGTTAAGGTT
AGGGTTAGGGAATTAGGGACAGGGGTAGGGTTAGGTTCCGCCGCTGCGCG
TCCTCTCGCGCCGCTGCTGTGTATAGGGAGAGTAAGAGGGCTGCTGGCAG
GGTCTGGGCTAGGGTTGGCGGTCGCGCTGACCGCCGCAAGTGTGAACCCC
GCGCGTCCGGGTGCGCGTATCGTACGCTGGGCGAACATGCCGGACGGCTA
CAGCTTCGGCAAGACGCAGGTGCCGTACATCACGGGGCATGAGATGGCGA
CCTCTGTGCAAGAAACGGTTGTCTTACACAGCGTATGAGATGCGCGCTTT
TCTTGAAGCATTCTGACAGGCATGCATGTGAGATACTAGGTTTGCTGCAT
GCATGTATATACTAGAAGTAGGTTTGCAGAAGTAGGTTTGCAGCTTCCGC
AAGACGCAGGTGCGCGCTGCACGCTGAGCGCTGCCACTTTTTTTTCCTGG
CCGCAGCATCGTTCAGCCAGGACGCTGGGTCCGTTTCACATCAGTGCGCG
CGCAGGTACTGTATAGAGAGAGAGAGAGGGGGGGGGGGGCAGGGTCTGGG
CTATGTCTGGGGGTCGCGCCGACCGCCGCAAGCGAGAACCCAGCACGTCC
CGGTGCGCGTATCGTACGCTGGCCTACCAACGTACAGCCAGAACGCTGGG
TCCGTTGCGTGCGCAGGTGCTGCGGCGCTGACACTGAAGCAAGAGAACAG
CTTGCTGTAGCACATTTTGAGCGCTGCCACATGGCGGCGCGCATTCGCCA
CACGCACTCACAGGCTGCTCACTGAGCACAGCTCGTTCTACAGCAACATC
GGTTGGCAGGCATGATGATTGAAGTCGTCCTTCTCCTTCAAGGAACTCTT
CGCCCGCATTCTCGCCAGTCTGCAGGCCAATAATGCGTGTTGGTGCCGAC
ACTCAAGCGTTTTTGCTGCACACACAGCGGATGGACGTGCTTGTGTCGCA
GTGCTCGTAATGCTAGGCTGCGTACCACCATGCCGATCCGCTGCGTGTAT
AAACACTCAAGTGTCGGCACCAACACCCACCATGGGCCTGCAGACTGGCG
CGCGAATGACGGCGGCAGGGTTCTCGCCAGAGGCGGACCACTTGTTATCT
CATTGGTCATGCCTGCCATCCGCGCTGGCATGTTGCTGTAGGATGAGCAG
TGCTCAGTAAGCAGCTTGTCGCGCTCTTTTAGCTGCGCGCGCATGCCGCG
GCGCTATTTGCCGCATGTACTGTCGCCGCATTGTGCGTGCGTGCGTGCCC
CGTGCGCCACTCACGCCCCAATCACTCTTACTGGCCGACCCTTTCTAATG
CTGAAAAACCACAGAGTCAGGCCGCCATATGTGCGCGCCGCATGGGACCA
CCAGCGCGAGCCCCTTGCGCTCTTTCACCACAGCTGCTACGCCAACATTA
AAAAACAAGGAGTGCGGCGCTCAAAGCACCGCTCACACACACACACACCC
CCCCCCCCCCCACCTTGCAGGTGATCTGCGAGGGGTACGCCTACCCCGAT
GACCCCTACATACTGCGCGGCTCCTGCCAGCTACAGTATGAGCTGCGCGT
CGCGCCCGGCGCCGCCGCCGCCGCCGCCGCCGCCAGCGGCAGCAGCGCGC
CGCCGCGCGGCAGCGGCAGGGCGCAGCCGCACGGCCGCGGCGGCGGCGCG
GCGGCAGCGGCGCACGGAGGGGAGAAGGCAGAGGGCGTGAGCTTTGTGCG
CTTCACGCTGCTGTGCCTCGTGGGCTGGCTGCTGCTGAAGCTGCTGACGC
ACCGCGCGCCGGCGCCCGCGGCCGCGCGCTCGGGGTTCGAAGGTGAGGCA
GCAGCGCTCGCCGCCTGAGCGTTGCGCACTCGACTGTGCGAGAGGTTTGC
ATTGCGGGGGAATCACCGATAGCATCCCTGCAAGTGCCTGTGATGTATGC
TACAATCACTTATCAATCAGCTTACAAGTAGAAGGAGTGGTCAAAGTGCA
TCACTGTGACATGCGCGTGCGCGCGCGCTTGCACCGTAGCGATTGCCGTG
TAACATTTTTGGAGTGCGATGCGCAGTACGCATTCGGTACGCAATTGACG
TCTGTGAGCTCGTGTATCTTCAAAGTACTGTACCGTGCGCTGAGCCATTG
TGATATTTTGTGCGCGTCTCGCTGCTGTGTTTTTGTTCAGGGGTGTCTGT
TGCTAAAGTAATACCTGTTGTTAAAAGTGCCCACCTCCAATTATATCTGC
AACAGGGCGCCTCAGTGACACTACTGCGAAGAGCGCTTGGTCTCAGTGAA
AGTTCAATTGTGAAGTACCACGTTTCCTGTAGTTGAAGTTGATGATATCG
TTGCACTTCGTCAACAGGCACATGCTGCTTGAAGTTGAAGCTCGCACGTC
TGACCTTACAGCAGATGCTTCATTTCAGGTGCCTTCAAAACCACAACCGT
TGGTTGGAGGTTGCTGTGACAACCAGGCAGCTGCAAGCAACGCTGCAGCG
CGAATTTCTGCGCACAATGAAGCCACAGCTGCACAACACTGTATTTTCTC
ATGTGGGCGCTTGAACTTGAACTCAGAATAACAGCACCCACTTTGTCGAG
AGCCTTTCACGCAGTCGCCACGGTTCCGCTGCGCAGCAAGCTGGCGCTCA
GGGAGAGGTGTCAAATCTATTGAGCGCATTGCTGGCTTGCTGCGCGGTGT
GCACGGTGCGGCACCCGTATTTCCGCGCTGGCGCGACAGGTCGTCGTGCG
CGTCCCATGACTGCGCGTTTCGCGTTGCATCGAATTAAACCACATGCTCC
ACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCACTCTTGCGAGC
ATACTTCCCAGGCGGGATACTTTTGAGCTGCCATTCGCGCAGCTCGCCGA
TGCCCTTGCAGTCGCCACGGTTCGGCTGCGCAGCCAGCTGGCGCTGAAGG
AATGTCATCAATGATTTTTTCAACGGCACCGCTTGCTACCGTCTCATCTC
TGCTGCAGGCGGAGGTGCGACGTCCTCCGCGCAAGGATGGGGCGGCGGCG
GAGGCGGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGCG
GGCGGTGCGGGAGGGGGTTGGAGCAACTTCAGGAGGCGGTTCGGCGGCGG
CGGCCCGCGCGGCGGCGGCGGCGAAGGCAGCGGCGGCACCGGCTTCATGG
GCACAGGTATGCAGATGAAACATGGTCTCAAGGTGCCTCCCGCAGCTGTA
CGTCATGTCACATGACTCGTGTGTGTTGGGCGGCACAGCATTGTGTATGC
GAGTTAGGCGCGGGCTGGCGCTCCGAGGCGCCTGCCGCCGGGGGCCCCTG
ACGTGCATGGTACAATCACATAGAAGCGCATGGTTGTGATGCCATTTGGC
GACGGCGTCGTTTGAGTGGTTGTCATTGAGACCCCTTCAGACACACAACA
TGTAGATTCTGTACAGCAAGCTTCAAGTTAGAAACCATCATGATTCATCT
GGGCTTTTTCGCACTCTGTGCGAGAATCGTTAAAAAGTACATGGTTGAAA
TACGGTATCTACACAGTGGACTATGGTGTGATCATCACGTCTTTATGTCG
TCACCGCACACACTGCTGCGCCTCGCCACTCAGCCGGCGCAGTGCGCTAC
TGCCGCATGTGTGCTTGGGGTAGGGTTATGTCGGTCATCCCAGCGGCAGG
TCACGCACTCGTGTCAGTGATGCTTGCGCAAGGTGTCAGCAAGCAATCAA
CATCTTTGAAGACTGCATCGGTGGATACATTTGTGTGTACAGACGTTGAT
CAGATTGTGTCACACTCGCAGTTTGCCAAACGTTCGCTGAGCTCTCAGAG
CCAAATCTGTAATCTGACAGCAGCTTCGAGCGGAGGGCGCAGCGCGCATA
GTAGTAACCGCGCCGCACACGCGCGCTGCCGCTGCCGCCCCCCTACCCCC
GTGCAGCAGGCCTGCGGTGAAAGGCGCGCGGACTTCTCTCGCGCTCTCCT
AGCCATTGCCCGGCAGCGCTGCCGCTGCAACACCGCAGCGGCGGCGGTGA
CGGCCACCTCGCGACCGCCAGCACATGCGGAGCGCCGACGCTCAATCCCC
CCGCCCCCCCTGCGCGCCCCCCTTCCCGTCATCCGCAGGCTTCAACATCC
CCGGCATGCCGCCGCCGCGCGCCGCCGCGCCGGACCCAACCAGCTGCGGG
CCGCAGCCTCGCGCCAGTGCTGCCGGCAGCGGGCCCGGGTTCTGGTCGGG
GCTGGCAGCGGGGTCCGGCCTCGGGTACATGTTCAGGGGGGGCAGCGGTA
CAGGGACGGGGGGGGTGTGTACTCGCGGCGCCCCCCCGCGGGGTTCCGTC
CCCCTGCTGCGGGGGCGGGGCAGCAGCGCTCGCCGCCGTCGCGCTCGCGC
AGCCGCAGCAGCAGCGGCGGCGGGCTGCACGCGGAGACGTCGTTTGCGTC
AACGGGGCGCCGCTGAGCGCTGAGATGGGTAGACTCAAAGGGGGAAGGAG
GGGGCTGATTAGAGCGACAGGC

Coding sequence (CDS) from alignment at Contig_22:856135..862806+

>mRNA_6408 ID=mRNA_6408|Name=jgi.p|Trimin1|348314|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1026bp|location=Sequence derived from alignment at Contig_22:856135..862806+ (Tribonema minus UTEX_B_3156 )
ATGCGGATAAGGAGCTTATTGCTGGGGTTGGGTTGCTGCGCTGCCTGGAC
AGGAGCCAATGCGGCAGCGCCCGAGAAAGTGCGCCTCACAGACGTGCAGA
CCATCACGCTGTTTGAAGACGGCCAGACGACGGGGCGCCGCAGCCGCCCC
GTGCCGCAGCTGGAGTGCCGCGGCAAGGGCTGCGGCGGCGCGGGGGCGTG
GCGCCCGCCCGCCGTGCAGTGCTACAACAGGGGGTCCGACGGCGCCGACG
TGCAGTGGGAGTGCCGCGCGAACATGCCGGACGGCTACAGCTTCGGCAAG
ACGCAGGTGATCTGCGAGGGGTACGCCTACCCCGATGACCCCTACATACT
GCGCGGCTCCTGCCAGCTACAGTATGAGCTGCGCGTCGCGCCCGGCGCCG
CCGCCGCCGCCGCCGCCGCCAGCGGCAGCAGCGCGCCGCCGCGCGGCAGC
GGCAGGGCGCAGCCGCACGGCCGCGGCGGCGGCGCGGCGGCAGCGGCGCA
CGGAGGGGAGAAGGCAGAGGGCGTGAGCTTTGTGCGCTTCACGCTGCTGT
GCCTCGTGGGCTGGCTGCTGCTGAAGCTGCTGACGCACCGCGCGCCGGCG
CCCGCGGCCGCGCGCTCGGGGTTCGAAGGCGGAGGTGCGACGTCCTCCGC
GCAAGGATGGGGCGGCGGCGGAGGCGGCGGCGGCAGCGGCGGCGGCGGCG
GCGGCGGCGGCGGCGGCGCGGGCGGTGCGGGAGGGGGTTGGAGCAACTTC
AGGAGGCGGTTCGGCGGCGGCGGCCCGCGCGGCGGCGGCGGCGAAGGCAG
CGGCGGCACCGGCTTCATGGGCACAGGCTTCAACATCCCCGGCATGCCGC
CGCCGCGCGCCGCCGCGCCGGACCCAACCAGCTGCGGGCCGCAGCCTCGC
GCCAGTGCTGCCGGCAGCGGGCCCGGGTTCTGGTCGGGGCTGGCAGCGGG
GTCCGGCCTCGGCCGCAGCAGCAGCGGCGGCGGGCTGCACGCGGAGACGT
CGTTTGCGTCAACGGGGCGCCGCTGA