mRNA_6397 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|348306
Unique NamemRNA_6397
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|348306 vs. uniprot
Match: A0A835Z140_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z140_9STRA)

HSP 1 Score: 211 bits (536), Expect = 4.220e-68
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 2 
Query:   74 MPVETTSAHRRAAKSTILSCANEELAANRQRGSRCRTWGRSRRWWRASRRSLKSGSCACWRRCWCASAYPCTSCSSGSPRTNREGPAACGRRDVRCFPCV 373
            MPVETTSAHRRAAKSTILSCANEELAANRQRGSRCRTWGRSRRWWRASRRSLKSGSCACWRRCWCASAYPCTSCSSGSPRTNREGPAACGRRDVRCFPCV
Sbjct:    1 MPVETTSAHRRAAKSTILSCANEELAANRQRGSRCRTWGRSRRWWRASRRSLKSGSCACWRRCWCASAYPCTSCSSGSPRTNREGPAACGRRDVRCFPCV 100
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|348306 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z140_9STRA4.220e-68100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:746135..747526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|348306|estExt_Genemark1.C_Ctg_220086
Hectar predicted targeting categoryother localisation
TranscriptId348628
TrackFilteredModels1
ProteinId348306
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348306gene_6397Tribonema minus UTEX_B_3156 geneContig_22 746135..747526 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6397_2exon_6397_2Tribonema minus UTEX_B_3156 exonContig_22 746135..746488 -
exon_6397_1exon_6397_1Tribonema minus UTEX_B_3156 exonContig_22 747368..747526 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6397UTR3_6397Tribonema minus UTEX_B_3156 three_prime_UTRContig_22 746135..746271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6397CDS_6397Tribonema minus UTEX_B_3156 CDSContig_22 747368..747453 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6397UTR5_6397Tribonema minus UTEX_B_3156 five_prime_UTRContig_22 747454..747526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|348306Trimin1|348306|estExt_Genemark1.C_Ctg_220086Tribonema minus UTEX_B_3156 polypeptideContig_22 746272..747453 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6397 ID=mRNA_6397|Name=jgi.p|Trimin1|348306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=513bp|location=Sequence derived from alignment at Contig_22:746135..747526- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACATTGTCAAGCCGTGCTTTGTCAGGAGATTTTCACTCCAAGATGGAGGG
CGAACAGCAGCAGAGGGCGCCTCATGCCGGTGGAGACGACATCAGCGCAC
AGGAGGGCAGCAAAATCAACGATTCTGAGTTGCGCAAACGAAGAGTTGGC
GGCGAACAGGCAGAGAGGATCGCGCTGCAGAACGTGGGGGAGGAGCCGGA
GATGGTGGAGGGCGTCAAGACGGTCGTTGAAGTCTGGCTCGTGTGCGTGC
TGGCGGCGCTGCTGGTGTGCTTCGGCGTATCCGTGTACTTCATGTTCTTC
TGGAAGCCCAAGGACGAATAGGGAGGGGCCTGCGGCATGTGGAAGGCGTG
ATGTGCGGTGCTTCCCGTGTGTGTAAATACCAACGGGCATCACGGCGTGC
GCTGTATGTATAGGTGACTCGAGGGGTAATCAAGGGGAATAGCGCACTGA
AGCCTCAGTGCACACTAAGCAGGGCCGCAGGGCCCTTGTCCTGCAAATAC
CCCTGTACTTGAA
back to top

protein sequence of jgi.p|Trimin1|348306

>Trimin1|348306|estExt_Genemark1.C_Ctg_220086 ID=Trimin1|348306|estExt_Genemark1.C_Ctg_220086|Name=jgi.p|Trimin1|348306|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=101bp
MPVETTSAHRRAAKSTILSCANEELAANRQRGSRCRTWGRSRRWWRASRR
SLKSGSCACWRRCWCASAYPCTSCSSGSPRTNREGPAACGRRDVRCFPCV
*
back to top

mRNA from alignment at Contig_22:746135..747526-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6397 ID=mRNA_6397|Name=jgi.p|Trimin1|348306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1392bp|location=Sequence derived from alignment at Contig_22:746135..747526- (Tribonema minus UTEX_B_3156 )
ACATTGTCAAGCCGTGCTTTGTCAGGAGATTTTCACTCCAAGATGGAGGG
CGAACAGCAGCAGAGGGCGCCTCATGCCGGTGGAGACGACATCAGCGCAC
AGGAGGGCAGCAAAATCAACGATTCTGAGTTGCGCAAACGAAGAGTTGGC
GGCGAACAGGTGGTGCACCACATATTGGGAATGTGACCAAGCGTAGTTGC
TCAGCATCAGAGCCCTCGAATCATCATTGAGTACCGAGCGACACGTAATG
GCAGTTGCTTGCACATGTTCAGAATTTCGACGAGGTTGACTCTCCCGTGT
GCAACTCCGGCAACTCTGCTACACTCCCTGGCCTTCGATCACCAAGCCCA
GAAGCTATAAGCTCTTTCGGTAACGCTCATCAAGATCATCACGTCAGTGA
TGCCAATCAAGACGCACTCGGTGACCCTGTCGAGAGCTTTGCTGACATCA
GTTGCTACGCATGTAAGCCCACAGCAGTCAGTAACTTCACGTGCCACAAT
CAGCTAGCACTCTCGCAACAGTTTGGCCACTCTCAGCTAGCTCACTGAGG
CCACTCTCAGCTAGCTCACTGAGCTCACTGCCTGCATCTACAGGGACACT
GTCTACAATTTTGAAGACCGGAACAGGCGCAGGCAGGATCCGCCTGCGTG
TGTCTTCCCCTGTTGCCAGGCTTGAGAACAATGGCATGCCCAACAAAGCG
GTTCTGGTATTCTTGCTGCCTCAGCTGAGTGTGCGCTCGCTCAGAGCATT
AGGGCCACTTGATATGGACATAGTTGCCTGCATTTGCAGGGCGTGAACCT
GGGCAATCTCAGGGGTCATTCGCTGCGGCCGCGCTTGACGCAGCGGTGCT
CAGTGTGTCCACCGCCCCTGGCTGTAGACATGTGTTGTGACGCAACAGTA
AGTAGCGGCACTAGCACGCACACACCCCTCATCACCTCTACTTGACACGT
CACTCTCTGCCCAAGCATGTGCATTGTACCCGCCACGCCGCGGCCATTGA
CGGTCGGCAGGCGTTTCCCAATCTCTCCTCGGCGCCAGGCAGAGAGGATC
GCGCTGCAGAACGTGGGGGAGGAGCCGGAGATGGTGGAGGGCGTCAAGAC
GGTCGTTGAAGTCTGGCTCGTGTGCGTGCTGGCGGCGCTGCTGGTGTGCT
TCGGCGTATCCGTGTACTTCATGTTCTTCTGGAAGCCCAAGGACGAATAG
GGAGGGGCCTGCGGCATGTGGAAGGCGTGATGTGCGGTGCTTCCCGTGTG
TGTAAATACCAACGGGCATCACGGCGTGCGCTGTATGTATAGGTGACTCG
AGGGGTAATCAAGGGGAATAGCGCACTGAAGCCTCAGTGCACACTAAGCA
GGGCCGCAGGGCCCTTGTCCTGCAAATACCCCTGTACTTGAA
back to top

Coding sequence (CDS) from alignment at Contig_22:746135..747526-

>mRNA_6397 ID=mRNA_6397|Name=jgi.p|Trimin1|348306|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=303bp|location=Sequence derived from alignment at Contig_22:746135..747526- (Tribonema minus UTEX_B_3156 )
ATGCCGGTGGAGACGACATCAGCGCACAGGAGGGCAGCAAAATCAACGAT
TCTGAGTTGCGCAAACGAAGAGTTGGCGGCGAACAGGCAGAGAGGATCGC
GCTGCAGAACGTGGGGGAGGAGCCGGAGATGGTGGAGGGCGTCAAGACGG
TCGTTGAAGTCTGGCTCGTGTGCGTGCTGGCGGCGCTGCTGGTGTGCTTC
GGCGTATCCGTGTACTTCATGTTCTTCTGGAAGCCCAAGGACGAATAGGG
AGGGGCCTGCGGCATGTGGAAGGCGTGATGTGCGGTGCTTCCCGTGTGTG
TAA
back to top