mRNA_10209 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|149899
Unique NamemRNA_10209
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|149899 vs. uniprot
Match: A0A836CNZ4_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNZ4_9STRA)

HSP 1 Score: 197 bits (501), Expect = 8.600e-64
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1 
Query:    1 MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDGEGDVAVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTPVAQFEE 318
            MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDGEGDVAVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTPVAQFEE
Sbjct:    1 MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDGEGDVAVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTPVAQFEE 106
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BLAST of jgi.p|Trimin1|149899 vs. uniprot
Match: D7FW89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW89_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 1.840e-15
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    1 MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGNDEESESSDGE-GDVAVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTPVAQFEE 318
            M LPPSSLLG+LEAFLP++ +AN+  ++   EG+ E +        +D   E +E +D E GD  V         EGA  +   G+ VQL FALGDFDDTP+A+ E+
Sbjct:    1 MNLPPSSLLGRLEAFLPEMEKANQKTEKLAQEGKLEVLXXXXXXXXSDKQTEGAEGTDDEAGDSEVEEEEEGGQVEGAAGVVAAGRTVQLDFALGDFDDTPIAKMEQ 107
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|149899 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CNZ4_9STRA8.600e-64100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
D7FW89_ECTSI1.840e-1543.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_104contigContig_104:287214..287531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|149899|gw1.104.71.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_003810.1
TranscriptId150221
TrackFilteredModels1
ProteinId149899
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149899gene_10209Tribonema minus UTEX_B_3156 geneContig_104 287214..287531 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10209_1exon_10209_1Tribonema minus UTEX_B_3156 exonContig_104 287214..287531 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10209CDS_10209Tribonema minus UTEX_B_3156 CDSContig_104 287214..287531 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|149899Trimin1|149899|gw1.104.71.1Tribonema minus UTEX_B_3156 polypeptideContig_104 287214..287531 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10209 ID=mRNA_10209|Name=jgi.p|Trimin1|149899|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_104:287214..287531- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTGCCGCCGAGCTCGCTGCTGGGCAAGCTTGAAGCCTTCCTCCC
CAAGCTGGCGCAGGCAAACCGGGACCTGCAGCAGCAAACACTCGAGGGCC
AAGCGGAAACGATAGACGCACACTTGGCGCTGGACGCAGCGGATGGCAAC
GACGAGGAGAGTGAAAGCTCCGATGGCGAGGGCGATGTAGCAGTAGCAGG
GGCATCGGCAAGAGCGATCAATGAGGGAGCAGGAGATATGCAGGGCGGAG
GTAAGGTGGTCCAGCTGAGCTTTGCTCTGGGAGACTTTGATGACACTCCG
GTCGCTCAGTTTGAAGAG
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protein sequence of jgi.p|Trimin1|149899

>Trimin1|149899|gw1.104.71.1 ID=Trimin1|149899|gw1.104.71.1|Name=jgi.p|Trimin1|149899|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=106bp
MELPPSSLLGKLEAFLPKLAQANRDLQQQTLEGQAETIDAHLALDAADGN
DEESESSDGEGDVAVAGASARAINEGAGDMQGGGKVVQLSFALGDFDDTP
VAQFEE
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mRNA from alignment at Contig_104:287214..287531-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10209 ID=mRNA_10209|Name=jgi.p|Trimin1|149899|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=318bp|location=Sequence derived from alignment at Contig_104:287214..287531- (Tribonema minus UTEX_B_3156 )
ATGGAGCTGCCGCCGAGCTCGCTGCTGGGCAAGCTTGAAGCCTTCCTCCC
CAAGCTGGCGCAGGCAAACCGGGACCTGCAGCAGCAAACACTCGAGGGCC
AAGCGGAAACGATAGACGCACACTTGGCGCTGGACGCAGCGGATGGCAAC
GACGAGGAGAGTGAAAGCTCCGATGGCGAGGGCGATGTAGCAGTAGCAGG
GGCATCGGCAAGAGCGATCAATGAGGGAGCAGGAGATATGCAGGGCGGAG
GTAAGGTGGTCCAGCTGAGCTTTGCTCTGGGAGACTTTGATGACACTCCG
GTCGCTCAGTTTGAAGAG
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Coding sequence (CDS) from alignment at Contig_104:287214..287531-

>mRNA_10209 ID=mRNA_10209|Name=jgi.p|Trimin1|149899|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=318bp|location=Sequence derived from alignment at Contig_104:287214..287531- (Tribonema minus UTEX_B_3156 )
ATGGAGCTGCCGCCGAGCTCGCTGCTGGGCAAGCTTGAAGCCTTCCTCCC
CAAGCTGGCGCAGGCAAACCGGGACCTGCAGCAGCAAACACTCGAGGGCC
AAGCGGAAACGATAGACGCACACTTGGCGCTGGACGCAGCGGATGGCAAC
GACGAGGAGAGTGAAAGCTCCGATGGCGAGGGCGATGTAGCAGTAGCAGG
GGCATCGGCAAGAGCGATCAATGAGGGAGCAGGAGATATGCAGGGCGGAG
GTAAGGTGGTCCAGCTGAGCTTTGCTCTGGGAGACTTTGATGACACTCCG
GTCGCTCAGTTTGAAGAG
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