Trimin1|4835|CE4834_76 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|4835
Unique Name	Trimin1\|4835\|CE4834_76
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	211

Homology

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: A0A835ZJN7_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJN7_9STRA)

HSP 1 Score: 343 bits (880), Expect = 3.440e-118
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0

Query:    1 MAMKRPREEESSEAIEAAAPSGDKSKAPAGGVRLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASSDGSGGNVPTVIGAVTPADGGLSNADGASQIDLARERDAAAKEDVSSDSKLEKRLAALRKRLANPQAAEGTGRSVRXXXXXXXXXXXXXXXXXTRKA 210
            MAMKRPREEESSEAIEAAAPSGDKSKAPAGGVRLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASSDGSGGNVPTVIGAVTPADGGLSNADGASQIDLARERDAAAKEDVSSDSKLEKRLAALRKRLANPQAAEGTGRSVRXXXXXXXXXXXXXXXXXTRKA
Sbjct:    1 MAMKRPREEESSEAIEAAAPSGDKSKAPAGGVRLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASSDGSGGNVPTVIGAVTPADGGLSNADGASQIDLARERDAAAKEDVSSDSKLEKRLAALRKRLANPQAAEGTGRSVRXXXXXXXXXXXXXXXXXTRKA 210

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: D8LT06_ECTSI (RRM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT06_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.810e-15
Identity = 43/85 (50.59%), Postives = 57/85 (67.06%), Query Frame = 0

Query:   34 LFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASSDGSG 118
            LFVGNL   RV++ V+IK+F    KV++ +  YH+ GP  G+PRGF FV  +  +DAA AI AL GRKL+GR L VR  + +G G
Sbjct:  128 LFVGNLSY-RVSEAVIIKLFTPFGKVVREQFCYHKVGPRLGEPRGFCFVEYSNVDDAAKAIRALHGRKLYGRPLRVRFMTVEGKG 211

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: UPI00143D8D15 (probable RNA-binding protein 18 n=1 Tax=Belonocnema kinseyi TaxID=2817044 RepID=UPI00143D8D15)

HSP 1 Score: 77.0 bits (188), Expect = 7.370e-14
Identity = 39/82 (47.56%), Postives = 57/82 (69.51%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASS 114
            RL+VGNLD  R+N+  L+K+ Q H  + K +L++HR+GP  GQPRG+AFV+  T EDA AA++AL   ++  + + VR A S
Sbjct:   23 RLWVGNLDL-RINEYQLLKLLQKHGTIEKFDLLFHRSGPQAGQPRGYAFVTYKTGEDAEAAMDALHNLRIGAKNIVVRWAHS 103

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: A0A1Y1HU15_KLENI (RRM domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HU15_KLENI)

HSP 1 Score: 75.1 bits (183), Expect = 7.840e-14
Identity = 36/80 (45.00%), Postives = 52/80 (65.00%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHA 112
            +LFVGNL   +V +  L+K+F  H  +++ + ++HR GP +GQPRG+AFV  +T  +A  A+  LDGR   GR L VR A
Sbjct:   11 KLFVGNLS-PKVTEYQLVKLFSQHGTIVQEDFMWHRDGPKKGQPRGYAFVEFSTRREAEKAVAQLDGRSFLGRPLVVRFA 89

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: M9LRN7_PSEA3 (RRM domain-containing protein n=3 Tax=Pseudozyma antarctica TaxID=84753 RepID=M9LRN7_PSEA3)

HSP 1 Score: 74.7 bits (182), Expect = 8.110e-13
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASSDGSGGNVPTVIGAVTPADGGLSNADG----ASQIDLARERDAAAKEDVSSDSKL---EKRLAALRK-RLANPQAAEGTGRS 187
            RL+VGNL  + V++  LI+ F  + K+ K + ++H++GP RGQPRG+AFV  A A++A  A+ A  G+ L GR +AV  AS            G         +  DG     +Q+ L++     AK+  S+D+K+   E +LA LRK +  +P +   TG++
Sbjct:   54 RLYVGNL-HTTVDEYTLIQTFANYGKIAKLDFLFHKSGPQRGQPRGYAFVEYAHADEALRALAATHGKTLRGRRIAVSFASKTADADQHAAAAGVGAHRRDRRAGHDGQAARTTQLSLSKN----AKQPHSTDAKIAAMEAKLAHLRKAKSTDPSSPPATGKA 211

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: UPI0007679218 (probable RNA-binding protein 18 n=5 Tax=Apoidea TaxID=34735 RepID=UPI0007679218)

HSP 1 Score: 73.9 bits (180), Expect = 1.010e-12
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASS 114
            RL+VGNLD  R+N+  L+K+ Q H  + K +L++HR+GP  GQPRG+AFV+  T +DA AA +AL   K+  + + VR A S
Sbjct:   23 RLWVGNLDL-RINEYQLLKLVQNHGTIEKFDLLFHRSGPQAGQPRGYAFVTYKTVQDAEAAKDALHNLKVGAKNIIVRWAHS 103

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: A0A7M7LKN1_APIME (Probable RNA-binding protein 18 n=14 Tax=Apinae TaxID=70987 RepID=A0A7M7LKN1_APIME)

HSP 1 Score: 73.9 bits (180), Expect = 1.030e-12
Identity = 39/82 (47.56%), Postives = 56/82 (68.29%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASS 114
            RL+VGNLD  R+N+  L+K+ Q H  + K +L++HR+GP  GQPRG+AFV+  T +DA AA +AL   K+  + + VR A S
Sbjct:   23 RLWVGNLDL-RINEYQLLKLVQKHGTIEKFDLLFHRSGPQAGQPRGYAFVTYKTIQDAKAAKDALHNLKVGAKNIIVRWAHS 103

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: W3VSH8_PSEA5 (RRM domain-containing protein n=1 Tax=Pseudozyma aphidis (strain ATCC 32657 / CBS 517.83 / DSM 70725 / JCM 10318 / NBRC 10182 / NRRL Y-7954 / St-0401) TaxID=1391700 RepID=W3VSH8_PSEA5)

HSP 1 Score: 74.3 bits (181), Expect = 1.130e-12
Identity = 56/163 (34.36%), Postives = 87/163 (53.37%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHASSDGSGGNVPTVIGAVTPADGGLSNADG----ASQIDLARERDAAAKEDVSSDSKL---EKRLAALRK-RLANPQAAEGTGRS 187
            RL+VGNL  + V++  LI+ F  + K+ K + ++H++GP RGQPRG+AFV  A A++A  A+ A  G+ L GR +AV  AS            G         +  DG     +Q+ L++     AK+  S+D+K+   E +LA LRK +   P     TG++
Sbjct:   54 RLYVGNL-HTTVDEYTLIQTFAKYGKIAKLDFLFHKSGPQRGQPRGYAFVEYAHADEALRALAATHGKTLRGRRIAVSFASKTADADQHAAAAGVGAHRRDRRAGHDGQAARTTQLSLSKN----AKQPHSTDAKIAAMEAKLAHLRKAKSTEPSGPPATGKA 211

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: UPI001EECDA2A (probable RNA-binding protein 18 n=1 Tax=Homalodisca vitripennis TaxID=197043 RepID=UPI001EECDA2A)

HSP 1 Score: 72.0 bits (175), Expect = 1.690e-12
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHA 112
            RL++GNLD   V++  L+K+ + H ++ K +L++HR+GP  GQPRG+AFV+ AT E A     A+DG+K+  + +AVR A
Sbjct:   17 RLWIGNLDTC-VSEYQLLKILEKHGRMEKFDLLFHRSGPLAGQPRGYAFVTYATVEQAEMMRAAMDGKKIGSKHIAVRWA 95

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BLAST of jgi.p|Trimin1|4835 vs. uniprot
Match: A0A0F7SE44_PHARH (Rna-binding domain-containing protein n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SE44_PHARH)

HSP 1 Score: 72.8 bits (177), Expect = 2.060e-12
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = 0

Query:   33 RLFVGNLDRSRVNDNVLIKVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGRKLFGRTLAVRHAS 113
            RL+VGNL  + V++  LIK+F    K+ K + ++H++GP RG+PRG+AFV  AT EDA  A+  L  + L GR L V  AS
Sbjct:   13 RLYVGNLQFT-VDEFALIKIFSRFGKIAKLDFLFHKSGPMRGKPRGYAFVEFATKEDAMKALTGLHDKPLRGRNLVVTFAS 92

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|4835 vs. uniprot

BLAST of jgi.p|Trimin1|4835 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835ZJN7_9STRA	3.440e-118	100.00	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
D8LT06_ECTSI	1.810e-15	50.59	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
UPI00143D8D15	7.370e-14	47.56	probable RNA-binding protein 18 n=1 Tax=Belonocnem...	[more]
A0A1Y1HU15_KLENI	7.840e-14	45.00	RRM domain-containing protein n=1 Tax=Klebsormidiu...	[more]
M9LRN7_PSEA3	8.110e-13	34.36	RRM domain-containing protein n=3 Tax=Pseudozyma a...	[more]
UPI0007679218	1.010e-12	47.56	probable RNA-binding protein 18 n=5 Tax=Apoidea Ta...	[more]
A0A7M7LKN1_APIME	1.030e-12	47.56	Probable RNA-binding protein 18 n=14 Tax=Apinae Ta...	[more]
W3VSH8_PSEA5	1.130e-12	34.36	RRM domain-containing protein n=1 Tax=Pseudozyma a...	[more]
UPI001EECDA2A	1.690e-12	45.00	probable RNA-binding protein 18 n=1 Tax=Homalodisc...	[more]
A0A0F7SE44_PHARH	2.060e-12	46.91	Rna-binding domain-containing protein n=1 Tax=Phaf...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 33..110 e-value: 2.4E-17 score: 73.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 34..107 e-value: 2.3E-12 score: 46.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 32..114 score: 16.960629
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 2..118 e-value: 3.5E-20 score: 74.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..172
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..210
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	PANTHER	PTHR21245	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN	coord: 26..179
None	No IPR available	PANTHER	PTHR21245:SF2	RNA-BINDING PROTEIN 18-RELATED	coord: 26..179
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 20..120

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_104	contig	Contig_104:350001..351931 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|4835	mRNA_10220	Tribonema minus UTEX_B_3156	mRNA	Contig_104 349762..351954 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|4835|CE4834_76 ID=Trimin1|4835|CE4834_76|Name=jgi.p|Trimin1|4835|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=211bp
MAMKRPREEESSEAIEAAAPSGDKSKAPAGGVRLFVGNLDRSRVNDNVLI
KVFQAHSKVLKAELVYHRAGPSRGQPRGFAFVSLATAEDAAAAIEALDGR
KLFGRTLAVRHASSDGSGGNVPTVIGAVTPADGGLSNADGASQIDLARER
DAAAKEDVSSDSKLEKRLAALRKRLANPQAAEGTGRSVRAAEGPGRSARA
ADRPGKTRKA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf