mRNA_6431 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|162677
Unique NamemRNA_6431
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: A0A836CG73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG73_9STRA)

HSP 1 Score: 221 bits (564), Expect = 2.730e-73
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVYQHACACLRVRAAPRHGRARRLPAMAVAGALAHHGARGHHRRCGTPPPEHAEALPRCVARWARARRRQWRRRQWHA 327
            PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVYQHACACLRVRAAPRHGRARRLPAMAVAGALAHHGARGHHRRCGTPPPEHAEALPRCVARWARARRRQWRRRQWHA
Sbjct:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVYQHACACLRVRAAPRHGRARRLPAMAVAGALAHHGARGHHRRCGTPPPEHAEALPRCVARWARARRRQWRRRQWHA 109
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: V7CDI0_PHAVU (Uncharacterized protein (Fragment) n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7CDI0_PHAVU)

HSP 1 Score: 60.8 bits (146), Expect = 4.400e-10
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANV SAQGPT L  Y
Sbjct:   21 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKY 54
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: T2FEK3_9BRAS (PsbC (Fragment) n=1 Tax=Lepidium draba TaxID=153317 RepID=T2FEK3_9BRAS)

HSP 1 Score: 60.8 bits (146), Expect = 6.520e-10
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANV SAQGPT L  Y
Sbjct:   40 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKY 73
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: A0A453M4Z7_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453M4Z7_AEGTS)

HSP 1 Score: 60.8 bits (146), Expect = 7.530e-10
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANV SAQGPT L  Y
Sbjct:   16 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKY 49
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: A0A8D5WEI4_9PHAE (Photosystem II CP43 apoprotein (Fragment) n=1 Tax=Porterinema fluviatile TaxID=246123 RepID=A0A8D5WEI4_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.800e-10
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANVASAQGPT L  Y
Sbjct:   59 PEASQAQAFTFLVRDQRLGANVASAQGPTGLGKY 92
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: A0A2K2DL66_BRADI (Uncharacterized protein (Fragment) n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A2K2DL66_BRADI)

HSP 1 Score: 60.8 bits (146), Expect = 1.280e-9
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANV SAQGPT L  Y
Sbjct:   37 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKY 70
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: A0A3P6DE01_BRACM (Uncharacterized protein n=1 Tax=Brassica campestris TaxID=3711 RepID=A0A3P6DE01_BRACM)

HSP 1 Score: 60.8 bits (146), Expect = 1.730e-9
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANV SAQGPT L  Y
Sbjct:   70 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKY 103
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: Q9G2C4_9CHLO (Photosystem II CP43 apoprotein (Fragment) n=3 Tax=Chlamydomonadales TaxID=3042 RepID=Q9G2C4_9CHLO)

HSP 1 Score: 61.2 bits (147), Expect = 1.830e-9
Identity = 30/34 (88.24%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQ+QAFTFLVRDQRLGANVASAQGPT L  Y
Sbjct:  114 PEASQSQAFTFLVRDQRLGANVASAQGPTGLGKY 147
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BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: A0A4V6T3X7_MUSBA (Uncharacterized protein n=1 Tax=Musa balbisiana TaxID=52838 RepID=A0A4V6T3X7_MUSBA)

HSP 1 Score: 60.8 bits (146), Expect = 2.000e-9
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANV SAQGPT L  Y
Sbjct:   54 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKY 87
[Close]
BLAST of jgi.p|Trimin1|162677 vs. uniprot
Match: UPI0018F814CA (photosystem II CP43 reaction center protein-like n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F814CA)

HSP 1 Score: 60.8 bits (146), Expect = 2.210e-9
Identity = 30/34 (88.24%), Postives = 30/34 (88.24%), Query Frame = 1 
Query:    1 PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVY 102
            PEASQAQAFTFLVRDQRLGANV SAQGPT L  Y
Sbjct:   35 PEASQAQAFTFLVRDQRLGANVGSAQGPTGLGKY 68
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|162677 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CG73_9STRA2.730e-73100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
V7CDI0_PHAVU4.400e-1088.24Uncharacterized protein (Fragment) n=1 Tax=Phaseol... [more]
T2FEK3_9BRAS6.520e-1088.24PsbC (Fragment) n=1 Tax=Lepidium draba TaxID=15331... [more]
A0A453M4Z7_AEGTS7.530e-1088.24Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
A0A8D5WEI4_9PHAE9.800e-1091.18Photosystem II CP43 apoprotein (Fragment) n=1 Tax=... [more]
A0A2K2DL66_BRADI1.280e-988.24Uncharacterized protein (Fragment) n=1 Tax=Brachyp... [more]
A0A3P6DE01_BRACM1.730e-988.24Uncharacterized protein n=1 Tax=Brassica campestri... [more]
Q9G2C4_9CHLO1.830e-988.24Photosystem II CP43 apoprotein (Fragment) n=3 Tax=... [more]
A0A4V6T3X7_MUSBA2.000e-988.24Uncharacterized protein n=1 Tax=Musa balbisiana Ta... [more]
UPI0018F814CA2.210e-988.24photosystem II CP43 reaction center protein-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:1028696..1029025 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|162677|e_gw1.22.44.1
BRITEko00000,ko00001,ko00002,ko00194
KEGG ModuleM00161
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG koko:K02705
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009521,GO:0009523,GO:0009532,GO:0009533,GO:0009534,GO:0009535,GO:0009536,GO:0009539,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0032991,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0098796
Preferred namepsbC
Descriptionphotosynthetic electron transport in photosystem II
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28ISP@1|root,2QR3X@2759|Eukaryota
Evalue1.05e-09
Seed ortholog2880.D1J6Z5
Hectar predicted targeting categoryother localisation
TranscriptId162999
TrackFilteredModels1
ProteinId162677
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162677gene_6431Tribonema minus UTEX_B_3156 geneContig_22 1028696..1029025 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6431_1exon_6431_1Tribonema minus UTEX_B_3156 exonContig_22 1028696..1029025 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6431CDS_6431Tribonema minus UTEX_B_3156 CDSContig_22 1028696..1029025 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|162677Trimin1|162677|e_gw1.22.44.1Tribonema minus UTEX_B_3156 polypeptideContig_22 1028696..1029025 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6431 ID=mRNA_6431|Name=jgi.p|Trimin1|162677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_22:1028696..1029025- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CCTGAAGCATCGCAAGCTCAAGCGTTTACATTCTTAGTGCGTGACCAACG
TTTAGGTGCTAACGTAGCATCGGCTCAAGGCCCTACTAATTTAAATGTAT
ACCAACACGCATGTGCGTGCTTGCGCGTGCGCGCAGCCCCTCGTCACGGA
CGTGCGCGCCGTCTTCCTGCGATGGCGGTCGCTGGCGCACTGGCGCACCA
CGGCGCGCGCGGTCACCACCGCCGCTGCGGAACGCCGCCGCCTGAGCACG
CTGAGGCGCTGCCACGCTGCGTGGCGCGATGGGCGCGCGCGCGGCGGCGG
CAGTGGCGGCGGCGGCAGTGGCACGCATAG
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protein sequence of jgi.p|Trimin1|162677

>Trimin1|162677|e_gw1.22.44.1 ID=Trimin1|162677|e_gw1.22.44.1|Name=jgi.p|Trimin1|162677|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=110bp
PEASQAQAFTFLVRDQRLGANVASAQGPTNLNVYQHACACLRVRAAPRHG
RARRLPAMAVAGALAHHGARGHHRRCGTPPPEHAEALPRCVARWARARRR
QWRRRQWHA*
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mRNA from alignment at Contig_22:1028696..1029025-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6431 ID=mRNA_6431|Name=jgi.p|Trimin1|162677|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=330bp|location=Sequence derived from alignment at Contig_22:1028696..1029025- (Tribonema minus UTEX_B_3156 )
CCTGAAGCATCGCAAGCTCAAGCGTTTACATTCTTAGTGCGTGACCAACG
TTTAGGTGCTAACGTAGCATCGGCTCAAGGCCCTACTAATTTAAATGTAT
ACCAACACGCATGTGCGTGCTTGCGCGTGCGCGCAGCCCCTCGTCACGGA
CGTGCGCGCCGTCTTCCTGCGATGGCGGTCGCTGGCGCACTGGCGCACCA
CGGCGCGCGCGGTCACCACCGCCGCTGCGGAACGCCGCCGCCTGAGCACG
CTGAGGCGCTGCCACGCTGCGTGGCGCGATGGGCGCGCGCGCGGCGGCGG
CAGTGGCGGCGGCGGCAGTGGCACGCATAG
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Coding sequence (CDS) from alignment at Contig_22:1028696..1029025-

>mRNA_6431 ID=mRNA_6431|Name=jgi.p|Trimin1|162677|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=330bp|location=Sequence derived from alignment at Contig_22:1028696..1029025- (Tribonema minus UTEX_B_3156 )
CCTGAAGCATCGCAAGCTCAAGCGTTTACATTCTTAGTGCGTGACCAACG
TTTAGGTGCTAACGTAGCATCGGCTCAAGGCCCTACTAATTTAAATGTAT
ACCAACACGCATGTGCGTGCTTGCGCGTGCGCGCAGCCCCTCGTCACGGA
CGTGCGCGCCGTCTTCCTGCGATGGCGGTCGCTGGCGCACTGGCGCACCA
CGGCGCGCGCGGTCACCACCGCCGCTGCGGAACGCCGCCGCCTGAGCACG
CTGAGGCGCTGCCACGCTGCGTGGCGCGATGGGCGCGCGCGCGGCGGCGG
CAGTGGCGGCGGCGGCAGTGGCACGCATAG
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