mRNA_6391 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A835Z587_9STRA (Cytochrome c1 n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z587_9STRA) HSP 1 Score: 500 bits (1288), Expect = 2.580e-177 Identity = 247/270 (91.48%), Postives = 249/270 (92.22%), Query Frame = 2
Query: 14 RLGIRSIRPSVAAASXXXXXXXXXXXXASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
RL R++RP AA A CNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTH E GAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME
Sbjct: 4 RLASRALRPHAVAAGLTASAAAGAGA-ALCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHDEAGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 272
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: D7FVX8_ECTSI (Ubiquinol cytochrome c reductase cytochrome c1 prec (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVX8_ECTSI) HSP 1 Score: 342 bits (877), Expect = 1.230e-114 Identity = 170/262 (64.89%), Postives = 208/262 (79.39%), Query Frame = 2
Query: 32 IRPSVAAASXXXXXXXXXXXXASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 817
+R VAAA+XXXXXXXX DD + ++ Y WP G L +FDHAAIRRG+QVYR+VCS+CHSI++++FRN +GV+H+E KK+A EFEV D PND+GEMFERPAK DR PGPY+NEA RAAN GA PPDLSL+ K RH G YV +LLTGY ++P GKDLLPGL+YNPYF G +I+MPPPLMDGQVEY DGTPATV+QM+KDV+ FLAWCAEPE DERK+ G+K + + LG+ ++ YYKR RW+P+KTRKITY
Sbjct: 18 LRARVAAAAXXXXXXXXVGGATVLCDDAVHTVEYDWPHSGFLQTFDHAAIRRGWQVYREVCSTCHSIKFVAFRNLIGVSHSEAEVKKIAAEFEVEDG-PNDEGEMFERPAKPSDRIPGPYKNEASARAANNGAYPPDLSLVVKGRHLGHHYVMSLLTGYTEAPVGKDLLPGLHYNPYFPGTSISMPPPLMDGQVEYPDGTPATVSQMSKDVTTFLAWCAEPEMDERKRMGMKWCSAMFLGLALSMYYKRFRWSPLKTRKITY 278
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A7R9YFS8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFS8_9STRA) HSP 1 Score: 335 bits (858), Expect = 4.910e-112 Identity = 160/243 (65.84%), Postives = 195/243 (80.25%), Query Frame = 2
Query: 95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
A +DD IPSL+ GW +G SS+D+ A+RRGFQVY++VCSSCHS++ I+FRN VGV TE+ AKKLAE +E+ D PND+GEMFERP KL D PGP+ NE RAAN GA PPDLSL+TKAR GG+DY+F+LLTGY ++P GK +L GL+YNPYF GGAIAMP LMDGQVEYEDGTPAT +QMAKDV+ FLAWCAEPEHDERKK GV+ + L + IT YYKR R++P+KTR+ITY++
Sbjct: 23 AFASDDHIPSLNPGWTHNGFFSSYDYKAVRRGFQVYKEVCSSCHSLERIAFRNLVGVCFTEDQAKKLAESYEIVDG-PNDEGEMFERPGKLSDYIPGPHANEEAARAANNGAYPPDLSLITKARPGGVDYIFSLLTGYVEAPEGKTMLSGLHYNPYFPGGAIAMPKQLMDGQVEYEDGTPATESQMAKDVATFLAWCAEPEHDERKKAGVRILAALFVAFLITGYYKRFRYSPLKTRQITYVK 264
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A7S1TQH4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQH4_9STRA) HSP 1 Score: 324 bits (830), Expect = 9.980e-108 Identity = 154/243 (63.37%), Postives = 194/243 (79.84%), Query Frame = 2
Query: 95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
A +DD IP+L+ GW +GA SS+D+ ++RRGFQVY++VC++CHS++ I+FRN V V +E+ AKKLAE +E+ D PND+GEMFERP KL D PGPY NE GRAANGGALPPDL+L+TKAR G +YVF+LLTGY D P GK +LPGL+YNPYFAGGAIAMP PL DG VEYEDGT AT +QMAKDVS FLAWCAEPE D+RKK GV+ + L + +T +YKR R++P+KTR+I+Y++
Sbjct: 27 AFASDDHIPALNPGWSHNGAFSSYDYKSVRRGFQVYKEVCATCHSVEGIAFRNLVNVIFSEKQAKKLAESYEIEDG-PNDEGEMFERPGKLSDYIPGPYANEEAGRAANGGALPPDLTLITKARPNGTNYVFSLLTGYVDPPEGKAMLPGLHYNPYFAGGAIAMPAPLTDGAVEYEDGTEATASQMAKDVSTFLAWCAEPEADDRKKNGVRIIGALTVAFLLTGFYKRFRYSPLKTRQISYVK 268
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A7S1BBA1_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BBA1_9STRA) HSP 1 Score: 323 bits (828), Expect = 2.730e-107 Identity = 152/239 (63.60%), Postives = 184/239 (76.99%), Query Frame = 2
Query: 104 NDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYM 820
++ + Y W G L +FDH AIRRG+QVY++VC++CHS++ I+FRNFVGVTH+ + K+L E +V D PND+GEMF+RP KL D+ P PY NE GRAANGGA PPDLSLM KARH G DYVF+LL GY ++P GKD+LPGLYYNPYF GG IAMPPPL DGQ++YEDGTPATV+QMAKDV FL WCAEPEHDERKK G KAV LA + T +YKR RW+ KTRK++Y+
Sbjct: 39 DESIVHPAHYHWDHAGLLDTFDHKAIRRGYQVYKEVCATCHSVEQIAFRNFVGVTHSTKEMKELTAEIDVEDG-PNDEGEMFDRPGKLADKLPSPYANEEAGRAANGGAYPPDLSLMIKARHSGPDYVFSLLAGYTEAPEGKDILPGLYYNPYFDGGLIAMPPPLDDGQLDYEDGTPATVSQMAKDVVIFLNWCAEPEHDERKKEGFKAVLCLAAALVFTGFYKRFRWSIYKTRKLSYV 276
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A024GLL4_9STRA (Cytochrome c domain-containing protein n=2 Tax=Albugo TaxID=65356 RepID=A0A024GLL4_9STRA) HSP 1 Score: 322 bits (825), Expect = 6.130e-107 Identity = 154/241 (63.90%), Postives = 186/241 (77.18%), Query Frame = 2
Query: 101 CNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
CNDD + YG+ G LSSFD+A++RRG+QVYR+VC+SCHS++ ISFRN VGVTHTEE K LA + +V D PND GEMF+RP KL D P PY N+ AAN GA+PPDLSLM KAR GG+DY+FALLTGY D P GK+LL GLYYNPYF+GGAIAM L DGQ++YEDGTPAT +QMAKDV+ FLAW AEPEHDERKK G+K + + +T YYKRL+WAP+K+RKI+Y +
Sbjct: 31 CNDDALSIPDYGFDHKGPLSSFDYASVRRGYQVYREVCASCHSLERISFRNLVGVTHTEEQVKALAADVDVEDG-PNDQGEMFDRPGKLSDPLPKPYPNDEAAAAANNGAIPPDLSLMVKARPGGVDYLFALLTGYVDPPEGKELLSGLYYNPYFSGGAIAMERQLQDGQIDYEDGTPATTSQMAKDVAVFLAWAAEPEHDERKKQGMKVLLAMGALALLTGYYKRLKWAPLKSRKISYTQ 270
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A485LA40_9STRA (Aste57867_18449 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LA40_9STRA) HSP 1 Score: 321 bits (823), Expect = 1.370e-106 Identity = 156/265 (58.87%), Postives = 194/265 (73.21%), Query Frame = 2
Query: 29 SIRPSVAAASXXXXXXXXXXXXASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYME 823
+++ + AAA S +DDCIP+ YG+ G ++FD AA+RRG+QVY++VCS+CHS+ I FR+ VGVTHTE+ AK LA + +V D PND+GEMFERP KL D P PY N+ AAN GA+PPDLSL+ KARH G DY+FAL+TGY D+P GKD+ GL+YNPYF GGAIAMP PL DG+VEYEDGTPATV+QMAKDVS FL+W AEPEHDERKK G++ L + +T YYKR+RWAP+KTRKI Y +
Sbjct: 10 ALKKAAAAAGGAVVGGSVLTGVTSFSDDCIPAQHYGFEHQGPFTAFDAAAVRRGYQVYKEVCSTCHSVDKIHFRHLVGVTHTEDEAKALAADIDVVDG-PNDEGEMFERPGKLSDPLPKPYANDEAASAANNGAIPPDLSLIVKARHAGADYLFALMTGYIDAPEGKDVGAGLHYNPYFGGGAIAMPAPLEDGKVEYEDGTPATVSQMAKDVSVFLSWAAEPEHDERKKMGMQWCFGLFVTALLTGYYKRMRWAPLKTRKIEYFK 273
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: M4C0R6_HYAAE (Cytochrome c domain-containing protein n=7 Tax=Peronosporaceae TaxID=4777 RepID=M4C0R6_HYAAE) HSP 1 Score: 320 bits (821), Expect = 2.480e-106 Identity = 156/238 (65.55%), Postives = 184/238 (77.31%), Query Frame = 2
Query: 104 NDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 817
+ D I +L YG+ G LSSFD+A++RRG+QVYR+VC+SCHS+ I FRN VGVTHTEE K +A + +VTD PND+GEMFERP KL D P PY N+ AAN GA+PPDLSLM KARH G DY+FALLTGY D P G +LL GL+YNPYF GGAIAM L DGQ++YEDGTP T +QMAKDVS FLAW AEPEHD RKK G++AV VLA G+T YYKRL+WAP+KTRKI+Y
Sbjct: 32 SSDQIEALHYGFDYQGPLSSFDYASVRRGYQVYREVCASCHSLDRICFRNLVGVTHTEEELKAIAADTDVTDG-PNDEGEMFERPGKLSDPLPRPYANDEAAAAANNGAIPPDLSLMVKARHAGADYLFALLTGYVDPPEGMELLDGLHYNPYFGGGAIAMERQLQDGQIDYEDGTPCTTSQMAKDVSVFLAWAAEPEHDVRKKQGMQAVIVLAALCGLTGYYKRLKWAPLKTRKISY 268
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A4D9D0D3_9STRA (Cytochrome c domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0D3_9STRA) HSP 1 Score: 321 bits (822), Expect = 2.630e-106 Identity = 150/242 (61.98%), Postives = 186/242 (76.86%), Query Frame = 2
Query: 95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITYM 820
A C+ D +PS+ YGW G L+S+D+ A+RRGFQVYR+VC+SCH++++ FRN VGVTHTEE KK+AE ++V D PN +GEMFERP KL D+ PGPY N+ RAAN GA PPDLSL+TKAR GG+DY+FALLTGY D P GK +L GL YNPYF GGAIAM L DGQ+EYEDGTPAT +QM+KDV+ FLAW AEPEHD RKK GV+ + L + + +T +YKR RW+P+KT K Y+
Sbjct: 41 AVCSADHVPSIDYGWNHHGLLASYDYPAVRRGFQVYREVCASCHALEHTYFRNLVGVTHTEEEVKKIAESYDVVDG-PNAEGEMFERPGKLSDKIPGPYANKEAARAANNGAYPPDLSLITKARPGGVDYIFALLTGYIDPPEGKAILSGLNYNPYFPGGAIAMARQLQDGQLEYEDGTPATTSQMSKDVATFLAWAAEPEHDYRKKAGVQWIGALLVALALTGFYKRFRWSPLKTAKFHYV 281
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Match: A0A2D4CAL0_PYTIN (DNA-directed RNA polymerases I and III subunit RPAC1 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAL0_PYTIN) HSP 1 Score: 332 bits (852), Expect = 3.930e-106 Identity = 157/241 (65.15%), Postives = 191/241 (79.25%), Query Frame = 2
Query: 95 ASCNDDCIPSLSYGWPQDGALSSFDHAAIRRGFQVYRQVCSSCHSIQYISFRNFVGVTHTEEGAKKLAEEFEVTDAQPNDDGEMFERPAKLFDRYPGPYRNEAEGRAANGGALPPDLSLMTKARHGGIDYVFALLTGYADSPAGKDLLPGLYYNPYFAGGAIAMPPPLMDGQVEYEDGTPATVTQMAKDVSQFLAWCAEPEHDERKKFGVKAVTVLALGIGITAYYKRLRWAPVKTRKITY 817
A+C+ D I +L+YG+ G LSSFD+A++RRG+QVY++VC++CHS++ I FRN +GVTHTEE KK+A E +V D PND+GEMFERP KL D P PY N+ AAN GA+PPDLSL+ KAR GG DY+FALLTGY D P GK+LLPGLYYNPYF GGAIAM L DGQ+EYEDGTPAT +QMAKDVS FLAW AEPEHDERKK G++ + L+ + +T YYKRL+WAP+KTRKITY
Sbjct: 29 AACSGDQIDALNYGFDHQGPLSSFDYASVRRGYQVYKEVCATCHSVERICFRNLIGVTHTEEELKKMAAEIDVVDG-PNDEGEMFERPGKLSDPLPKPYANDEAAAAANNGAIPPDLSLIVKARPGGADYLFALLTGYVDPPEGKELLPGLYYNPYFGGGAIAMERQLRDGQIEYEDGTPATTSQMAKDVSVFLAWAAEPEHDERKKMGMQTILALSAMVLLTGYYKRLKWAPLKTRKITY 268 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|43953 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_6391 ID=mRNA_6391|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=995bp|location=Sequence derived from alignment at Contig_22:689829..694127+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCAAAGCATGTTCAGGCTAGGTATCAGGAGCATCAGGCCCTCAGTGGCAGback to top protein sequence of jgi.p|Trimin1|43953 >Trimin1|43953|CE43952_446 ID=Trimin1|43953|CE43952_446|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=273bp MFRLGIRSIRPSVAAASAVAAAAVGAGVGASCNDDCIPSLSYGWPQDGALback to top mRNA from alignment at Contig_22:689829..694127+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_6391 ID=mRNA_6391|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4299bp|location=Sequence derived from alignment at Contig_22:689829..694127+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_22:689829..694127+ >mRNA_6391 ID=mRNA_6391|Name=jgi.p|Trimin1|43953|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=819bp|location=Sequence derived from alignment at Contig_22:689829..694127+ (Tribonema minus UTEX_B_3156 )back to top |