mRNA_6324 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|43577
Unique NamemRNA_6324
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|43577 vs. uniprot
Match: A0A836CGP8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGP8_9STRA)

HSP 1 Score: 163 bits (412), Expect = 5.690e-48
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 3 
Query:  156 MSTLRWLECHAREVMRDTVMSGPGWSHTHVKLVTSHCGCENGNFTSRAPEGSSAHLVGPLLLRVARGALALALLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAVLALAAHGCG 575
            MSTLRWLECHAREVMRDTVMSGPGWSHTHVKLVTSHCGCENGNFTSRAPEGSSAHLVGPLLLRVARGALALALLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAVLALAAHGCG
Sbjct:    1 MSTLRWLECHAREVMRDTVMSGPGWSHTHVKLVTSHCGCENGNFTSRAPEGSSAHLVGPLLLRVARGALALALLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLAVLALAAHGCG 140
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|43577 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CGP8_9STRA5.690e-48100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_22contigContig_22:112495..113144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|43577|CE43576_7004
Hectar predicted targeting categorysignal anchor
TranscriptId43899
TrackFilteredModels1
ProteinId43577
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|43577gene_6324Tribonema minus UTEX_B_3156 geneContig_22 112495..113144 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_6324_1exon_6324_1Tribonema minus UTEX_B_3156 exonContig_22 112495..113144 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_6324UTR3_6324Tribonema minus UTEX_B_3156 three_prime_UTRContig_22 112495..112566 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_6324CDS_6324Tribonema minus UTEX_B_3156 CDSContig_22 112567..112989 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_6324UTR5_6324Tribonema minus UTEX_B_3156 five_prime_UTRContig_22 112990..113144 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|43577Trimin1|43577|CE43576_7004Tribonema minus UTEX_B_3156 polypeptideContig_22 112567..112989 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_6324 ID=mRNA_6324|Name=jgi.p|Trimin1|43577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=650bp|location=Sequence derived from alignment at Contig_22:112495..113144- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GTTTCAGGAGCGAATCACCATGCGTGCTTTGCTCCGTTTGGTCTTGTGGC
GATGCGCGGGGGGGGGGGCGGGGGGTCAAATCACGGGCTGCAGTGGCCGC
GACGCCGGAATGGCGTTCGTGAAGCCACACGAATAGTGGTGACGCTCAGA
CATAGATGTCAACACTGCGTTGGTTGGAATGCCACGCGCGTGAGGTGATG
CGAGACACAGTCATGTCGGGACCTGGATGGTCACATACCCATGTGAAGCT
GGTGACTTCACATTGCGGATGTGAAAATGGTAACTTCACATCACGGGCGC
CTGAGGGCAGCAGTGCTCACCTTGTTGGACCTCTCCTCCTCCGCGTCGCT
CGTGGCGCTCTCGCGCTCGCGCTTCTTGTCCTTCTTGTCGTGCTTGTGCT
TTTTTTCTTTCTTCTCCTTTTTCTCCTTTTTGTCCTTCTTCTCCTTTTTC
TCCTTTTTGTCCTTCTTTTCCTTCTTCTCCTTTTGCTCTTTCCTCTCCTT
TTTGTCCTTCTTCTCCTTCTTGTGCTTCTTGCGCTCCGGCTCGCTGTTCT
CGCCCTCGCTGCTCATGGCTGCGGCTAACCCTAACCCTTGCAGCTGACCA
GACGAGCACGGGCGCAGCGGGATGGCACACAGTTCAGGTGGCCGCGGTTG
back to top

protein sequence of jgi.p|Trimin1|43577

>Trimin1|43577|CE43576_7004 ID=Trimin1|43577|CE43576_7004|Name=jgi.p|Trimin1|43577|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=141bp
MSTLRWLECHAREVMRDTVMSGPGWSHTHVKLVTSHCGCENGNFTSRAPE
GSSAHLVGPLLLRVARGALALALLVLLVVLVLFFFLLLFLLFVLLLLFLL
FVLLFLLLLLLFPLLFVLLLLLVLLALRLAVLALAAHGCG*
back to top

mRNA from alignment at Contig_22:112495..113144-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_6324 ID=mRNA_6324|Name=jgi.p|Trimin1|43577|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=650bp|location=Sequence derived from alignment at Contig_22:112495..113144- (Tribonema minus UTEX_B_3156 )
GTTTCAGGAGCGAATCACCATGCGTGCTTTGCTCCGTTTGGTCTTGTGGC
GATGCGCGGGGGGGGGGGCGGGGGGTCAAATCACGGGCTGCAGTGGCCGC
GACGCCGGAATGGCGTTCGTGAAGCCACACGAATAGTGGTGACGCTCAGA
CATAGATGTCAACACTGCGTTGGTTGGAATGCCACGCGCGTGAGGTGATG
CGAGACACAGTCATGTCGGGACCTGGATGGTCACATACCCATGTGAAGCT
GGTGACTTCACATTGCGGATGTGAAAATGGTAACTTCACATCACGGGCGC
CTGAGGGCAGCAGTGCTCACCTTGTTGGACCTCTCCTCCTCCGCGTCGCT
CGTGGCGCTCTCGCGCTCGCGCTTCTTGTCCTTCTTGTCGTGCTTGTGCT
TTTTTTCTTTCTTCTCCTTTTTCTCCTTTTTGTCCTTCTTCTCCTTTTTC
TCCTTTTTGTCCTTCTTTTCCTTCTTCTCCTTTTGCTCTTTCCTCTCCTT
TTTGTCCTTCTTCTCCTTCTTGTGCTTCTTGCGCTCCGGCTCGCTGTTCT
CGCCCTCGCTGCTCATGGCTGCGGCTAACCCTAACCCTTGCAGCTGACCA
GACGAGCACGGGCGCAGCGGGATGGCACACAGTTCAGGTGGCCGCGGTTG
back to top

Coding sequence (CDS) from alignment at Contig_22:112495..113144-

>mRNA_6324 ID=mRNA_6324|Name=jgi.p|Trimin1|43577|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=423bp|location=Sequence derived from alignment at Contig_22:112495..113144- (Tribonema minus UTEX_B_3156 )
ATGTCAACACTGCGTTGGTTGGAATGCCACGCGCGTGAGGTGATGCGAGA
CACAGTCATGTCGGGACCTGGATGGTCACATACCCATGTGAAGCTGGTGA
CTTCACATTGCGGATGTGAAAATGGTAACTTCACATCACGGGCGCCTGAG
GGCAGCAGTGCTCACCTTGTTGGACCTCTCCTCCTCCGCGTCGCTCGTGG
CGCTCTCGCGCTCGCGCTTCTTGTCCTTCTTGTCGTGCTTGTGCTTTTTT
TCTTTCTTCTCCTTTTTCTCCTTTTTGTCCTTCTTCTCCTTTTTCTCCTT
TTTGTCCTTCTTTTCCTTCTTCTCCTTTTGCTCTTTCCTCTCCTTTTTGT
CCTTCTTCTCCTTCTTGTGCTTCTTGCGCTCCGGCTCGCTGTTCTCGCCC
TCGCTGCTCATGGCTGCGGCTAA
back to top