Trimin1|354212|estExt_Genemark1.C_Ctg_2190004 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354212
Unique NameTrimin1|354212|estExt_Genemark1.C_Ctg_2190004
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length394
Homology
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: A0A835Z8I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I2_9STRA)

HSP 1 Score: 737 bits (1902), Expect = 8.010e-268
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query:    1 MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDSELADGGAAFSFGEEEEYDAFSDESDSFDMTATARQARVGRRKGGASGIRNVAHKLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQSGVPAAQQTDRPLARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDATYEPLVTAYAELASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQGLMPRDE 393
            MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDSELADGGAAFSFGEEEEYDAFSDESDSFDMTATARQARVGRRKGGASGIRNVAHKLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQSGVPAAQQTDRPLARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDATYEPLVTAYAELASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQGLMPRDE
Sbjct:    1 MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDSELADGGAAFSFGEEEEYDAFSDESDSFDMTATARQARVGRRKGGASGIRNVAHKLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQSGVPAAQQTDRPLARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDATYEPLVTAYAELASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQGLMPRDE 393          
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: A0A6H5L695_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.230e-14
Identity = 94/323 (29.10%), Postives = 141/323 (43.65%), Query Frame = 0
Query:  104 KLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKY-FPAHM--QSGVPAA---------------QQTDRP-------------LARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDAT-YEPLVTAYAEL--------ASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQ 386
            KL  A+  L+ +  G      +++ E++ +ISSD+E+T+ KATRP++DPAKRKHV+ +L  +++ FP +M  + G  AA               +  +R              LAR TT ESW Y   TL  ++R  D  + + SR  FS R IS+   D   +   + AYAE         +      AA+D +             AK     LA  +    L NDVT D L L   DL + W  +Q+ LE  LQ        G    +GE+ R      FYL  L         ++ ++  YGH     +   L + ++Q
Sbjct:  304 KLADAQVGLKTKMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDED--KGTKSRY-FSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALAC-EIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQ----RFTGAGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYGHAVPKGLGDDLATEMLQ 618          
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: D8LGM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 8.490e-14
Identity = 93/323 (28.79%), Postives = 140/323 (43.34%), Query Frame = 0
Query:  104 KLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKY-FPAHM--QSGVPAA---------------QQTDRP-------------LARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDAT-YEPLVTAYAEL--------ASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQ 386
            KL  A+  L+ +  G      +++ E++ +ISSD+E+T+ KATRP++DPAKRKHV+ +L  +++ FP +M  + G  AA               +  +R              LAR TT ESW Y   TL  ++R  D  + + SR  FS R IS+   D   +   + AYAE         +      AA+D +             AK     LA  +    L NDVT D L L   DL + W  +Q+ LE  LQ        G    +GE+ R      FYL  L         ++ ++  Y H     +   L + ++Q
Sbjct:  269 KLADAQVGLKTKMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDED--KGTKSRY-FSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALAC-EIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQ----RFTGGGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQ 583          
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: H6WB97_VAULI (ENTH domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI)

HSP 1 Score: 67.0 bits (162), Expect = 1.490e-8
Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 0
Query:  111 KLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQ-SGVPAAQQTDRP-------LARETTQESWLYLSKTLAVVKR 207
            K++A++ G I   K+L+ E +S +SSDME TV KATRPND+ AKRKHV  M+G S YFP  ++  G     + + P       L R+     W   +K+L ++ R
Sbjct:   61 KVKAKKQGLINKVKKLIREGKSLLSSDMEMTVLKATRPNDNLAKRKHVKRMIGASLYFPTFLKIEGQVPRNREEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHR 165          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z8I2_9STRA8.010e-268100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L695_9PHAE1.230e-1429.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGM3_ECTSI8.490e-1428.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
H6WB97_VAULI1.490e-840.00ENTH domain-containing protein n=1 Tax=Vaucheria l... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 115..248
e-value: 1.2E-6
score: 30.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..52

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_219contigContig_219:25719..28532 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354212mRNA_16652Tribonema minus UTEX_B_3156 mRNAContig_219 25632..28532 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354212|estExt_Genemark1.C_Ctg_2190004 ID=Trimin1|354212|estExt_Genemark1.C_Ctg_2190004|Name=jgi.p|Trimin1|354212|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=394bp
MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDS
ELADGGAAFSFGEEEEYDAFSDESDSFDMTATARQARVGRRKGGASGIRN
VAHKLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPND
DPAKRKHVDFMLGCSKYFPAHMQSGVPAAQQTDRPLARETTQESWLYLSK
TLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDATYEPLVTAYAELASGTA
AAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLA
ATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRN
LPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQGLMPRDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008942ENTH_VHS