mRNA_16652 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: A0A835Z8I2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8I2_9STRA) HSP 1 Score: 736 bits (1901), Expect = 3.630e-267 Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 1
Query: 1 MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDSELADGGAAFSFGEEEEYDAFSDESDSFDMTATARQARVGRRKGGASGIRNVAHKLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQSGVPAAQQTDRPLARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDATYEPLVTAYAELASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQGLMPRDE 1179
MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDSELADGGAAFSFGEEEEYDAFSDESDSFDMTATARQARVGRRKGGASGIRNVAHKLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQSGVPAAQQTDRPLARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDATYEPLVTAYAELASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQGLMPRDE
Sbjct: 1 MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDSELADGGAAFSFGEEEEYDAFSDESDSFDMTATARQARVGRRKGGASGIRNVAHKLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQSGVPAAQQTDRPLARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDATYEPLVTAYAELASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQGLMPRDE 393
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: A0A6H5L695_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L695_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.690e-14 Identity = 94/323 (29.10%), Postives = 141/323 (43.65%), Query Frame = 1
Query: 310 KLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKY-FPAHM--QSGVPAA---------------QQTDRP-------------LARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDAT-YEPLVTAYAEL--------ASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQ 1158
KL A+ L+ + G +++ E++ +ISSD+E+T+ KATRP++DPAKRKHV+ +L +++ FP +M + G AA + +R LAR TT ESW Y TL ++R D + + SR FS R IS+ D + + AYAE + AA+D + AK LA + L NDVT D L L DL + W +Q+ LE LQ G +GE+ R FYL L ++ ++ YGH + L + ++Q
Sbjct: 304 KLADAQVGLKTKMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDED--KGTKSRY-FSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALAC-EIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQ----RFTGAGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYGHAVPKGLGDDLATEMLQ 618
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: D8LGM3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM3_ECTSI) HSP 1 Score: 84.0 bits (206), Expect = 1.130e-13 Identity = 93/323 (28.79%), Postives = 140/323 (43.34%), Query Frame = 1
Query: 310 KLGQAKAKLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKY-FPAHM--QSGVPAA---------------QQTDRP-------------LARETTQESWLYLSKTLAVVKRQPDPRRPSSSRKPFSLRAISSSVKDAT-YEPLVTAYAEL--------ASGTAAAAALDGDAGDSDGEGLASLTAKAGSDGLAVIDSNSALHNDVTVDALSLAATDLLQFWGTYQETLERMLQHYAQLNERGKEPLAGEVERLQQLCGFYLRNLPQVTQAAHMANTVMVQYGHEALPAMYKPLRSSLIQ 1158
KL A+ L+ + G +++ E++ +ISSD+E+T+ KATRP++DPAKRKHV+ +L +++ FP +M + G AA + +R LAR TT ESW Y TL ++R D + + SR FS R IS+ D + + AYAE + AA+D + AK LA + L NDVT D L L DL + W +Q+ LE LQ G +GE+ R FYL L ++ ++ Y H + L + ++Q
Sbjct: 269 KLADAQVGLKTKMTGVTHKGAKVMRELKGSISSDLEKTLIKATRPDNDPAKRKHVNLLLQAAEHAFPVYMNPKDGGQAAWKEGPYWMTLHKLWRRMAERDYRTASKAVYVLHRLARGTTAESWGYFRSTLQEMRRDED--KGTKSRY-FSRRVISNVDDDGRPFSEWLDAYAEFVLLRLQSFSPELGELAAIDAETPHEKASRSLEKAAKLIEAALAC-EIGPDLDNDVTCDGLKLVIEDLCEVWSLFQQKLEIRLQQ----RFTGGGFSSGELRRTLSFLEFYLEQLSAAQGLVQESHRLLALYSHAVPKGLGDDLATEMLQ 583
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Match: H6WB97_VAULI (ENTH domain-containing protein n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB97_VAULI) HSP 1 Score: 67.0 bits (162), Expect = 1.750e-8 Identity = 42/105 (40.00%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 331 KLQAQRAGAIQGTKRLLSEVRSAISSDMERTVSKATRPNDDPAKRKHVDFMLGCSKYFPAHMQ-SGVPAAQQTDRP-------LARETTQESWLYLSKTLAVVKR 621
K++A++ G I K+L+ E +S +SSDME TV KATRPND+ AKRKHV M+G S YFP ++ G + + P L R+ W +K+L ++ R
Sbjct: 61 KVKAKKQGLINKVKKLIREGKSLLSSDMEMTVLKATRPNDNLAKRKHVKRMIGASLYFPTFLKIEGQVPRNREEGPYHMLLLKLWRQMKSSDWRTSTKSLYILHR 165 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354212 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_16652 ID=mRNA_16652|Name=jgi.p|Trimin1|354212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1269bp|location=Sequence derived from alignment at Contig_219:25632..28532- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGTGGCGGCGAGCCTTGGCTGTGCTTGTGGCCATTTTGATCGCATAback to top protein sequence of jgi.p|Trimin1|354212 >Trimin1|354212|estExt_Genemark1.C_Ctg_2190004 ID=Trimin1|354212|estExt_Genemark1.C_Ctg_2190004|Name=jgi.p|Trimin1|354212|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=394bp MLWRRALAVLVAILIAYPECDAKKSHRARHKAISNLRNSDQARKPPGSDSback to top mRNA from alignment at Contig_219:25632..28532- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_16652 ID=mRNA_16652|Name=jgi.p|Trimin1|354212|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2901bp|location=Sequence derived from alignment at Contig_219:25632..28532- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_219:25632..28532- >mRNA_16652 ID=mRNA_16652|Name=jgi.p|Trimin1|354212|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1182bp|location=Sequence derived from alignment at Contig_219:25632..28532- (Tribonema minus UTEX_B_3156 )back to top |