mRNA_17753 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354160
Unique NamemRNA_17753
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A836CJ70_9STRA (Casein kinase II subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ70_9STRA)

HSP 1 Score: 546 bits (1408), Expect = 2.480e-194
Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 1 
Query:    1 MQAEQVENQIDAAVADLEARTRGLTVSPAVNGTTDASRGKGAAAEAPLSEQGEAAAANGEVSGSNDDPSVEEEXXXXXXXXXXXXXDDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGMQGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQEKAAALNKSGKRRESRDSASRRXXXXXXGSAXXXXXXXXXXXXGEAQALPQGQK 960
            MQAEQVENQIDAAVADLEARTRGLTVSPAVNGTTDASRGKGAAAEAPLSEQGEAAAANGEVSGSNDDPSVEEEXXXXXXXXXXXXXDDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGMQGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQEKAAALNKSGKRRESRDSASRRXXXXXXGSAXXXXXXXXXXXXGEAQALPQGQK
Sbjct:    1 MQAEQVENQIDAAVADLEARTRGLTVSPAVNGTTDASRGKGAAAEAPLSEQGEAAAANGEVSGSNDDPSVEEEXXXXXXXXXXXXXDDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGMQGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQEKAAALNKSGKRRESRDSASRRXXXXXXGSAXXXXXXXXXXXXGEAQALPQGQK 320
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BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A1E7EUU7_9STRA (Casein kinase II subunit beta n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUU7_9STRA)

HSP 1 Score: 271 bits (694), Expect = 3.130e-87
Identity = 132/221 (59.73%), Postives = 164/221 (74.21%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGM--------------------QGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYH----RARQEKAAALNKSGKRRESRD 849
            D+DGSWI+WF SLRGNEFFCE+DEDYIQDDFNLTGLSS VPYYE+AL+++LD+E   E+ LT+EQ+E+VE AAEMLYGLIHAR+I+T RGM                    QGQ  LPVGLSDLPR+ TV VFCP+CH +F PKS RQ  +DGAYFGT+FPHL+L+ +P  IP +  QTYVPR+YGFKVH++S+++     A  +K+   N S + R SRD
Sbjct:    5 DEDGSWITWFCSLRGNEFFCEVDEDYIQDDFNLTGLSSLVPYYEYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRAAAFGRCPRVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPDMIPTKPQQTYVPRVYGFKVHKTSLFYINHEEAPSKKSTIENSSKQSRRSRD 225
[Close]
BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A836CD25_9STRA (Casein kinase II subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CD25_9STRA)

HSP 1 Score: 273 bits (699), Expect = 1.860e-86
Identity = 141/243 (58.02%), Postives = 174/243 (71.60%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENG----------------------LTDEQREVVEGAAEMLYGLIHARFILTTRGMQG--------------------QSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRA-RQEKAAALNKSGK---RRESRD 849
            D+D +WISWFVSLRGNEFFCE+DE+YIQDDFNLTGLS+ VPYY++AL++ILD+E   E+                       LT+EQ+EVVE AAEMLYGLIHARFILTTRGMQG                    Q+ LPVGLSD+PRSCTVAV+CP+C D+FHPKS RQ  VDGAYFGT+FPHLFLL +P  IPAR +Q+YVPR+YGF+++ +S Y+R  R+E+A+  ++SG    RRE RD
Sbjct:   90 DEDSTWISWFVSLRGNEFFCEVDEEYIQDDFNLTGLSTLVPYYDYALDMILDVEVPTEHXXXXXXXXXXXXXXXXXXXXXXXLTEEQQEVVESAAEMLYGLIHARFILTTRGMQGMLSKYQTGAFGRCPRIYCQGQNVLPVGLSDVPRSCTVAVYCPRCQDIFHPKSTRQANVDGAYFGTTFPHLFLLTHPDVIPARPSQSYVPRVYGFRINAASAYYRNNRRERASEDSQSGSARTRRERRD 332
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BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: D8LMG2_ECTSI (Casein kinase II subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMG2_ECTSI)

HSP 1 Score: 273 bits (698), Expect = 2.630e-86
Identity = 133/222 (59.91%), Postives = 166/222 (74.77%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGMQG--------------------QSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQEKAAALNKSGKRRESRDSASRR 864
            D+D +WISWFV+LRGNEFFCE+DEDYIQDDFNLTGLS+ VPYYE+AL++ILD+E  A   LT+EQ+EVVE AAE+LYGLIHAR+ILT+RGMQG                    Q+ LP GLSD+PR+CTVAV+CPKC D+FHPKS RQ  +DGAYFGT+F HLFLL +P  IP+R +Q Y  RIYGFK+H++S YHR  ++ +     SG  R SR  +S++
Sbjct:  112 DEDSTWISWFVTLRGNEFFCEVDEDYIQDDFNLTGLSTMVPYYEYALDMILDVEMPAGQTLTEEQQEVVESAAEILYGLIHARYILTSRGMQGMFDKFQVGAFGRCPRVYCQGQNVLPAGLSDVPRNCTVAVYCPKCQDIFHPKSTRQANIDGAYFGTTFSHLFLLAHPELIPSRPSQAYCSRIYGFKIHQTSAYHRNNKDPSNGEGGSG--RGSRRKSSKK 331
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BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A7S4IQT0_9STRA (Casein kinase II subunit beta n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IQT0_9STRA)

HSP 1 Score: 268 bits (685), Expect = 1.760e-85
Identity = 124/201 (61.69%), Postives = 153/201 (76.12%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGM--------------------QGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQE 801
            D+DGSWISWF SLRGNEFFCE+DEDYIQDDFNLTGL+  VPYY++AL+++LD+E   E+ LT+EQ+E+VE AAEMLYGLIHAR+ILT RGM                    QGQ  LPVGLSDLPR+ TV VFCP+CH +F PKS RQ  +DGAYFGT+FPHL+L+ +P  IP +  Q Y+PR+YGF+VH SS+Y+R  +E
Sbjct:   24 DEDGSWISWFCSLRGNEFFCEVDEDYIQDDFNLTGLNGLVPYYDYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYILTNRGMHAMYEKYRSASFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPDMIPVKPAQRYIPRVYGFRVHRSSLYYRNHEE 224
[Close]
BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A7S2EDQ1_TRICV (Casein kinase II subunit beta n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EDQ1_TRICV)

HSP 1 Score: 269 bits (688), Expect = 2.300e-85
Identity = 124/201 (61.69%), Postives = 155/201 (77.11%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGM--------------------QGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQE 801
            D+DGSWI+WF SLRGNEFFCE+DEDYIQDDFNLTGL+S VPYY++AL+++LD+E   E+ LT+EQ+E+VE AAEMLYGLIHAR+I+T RGM                    QGQ  LPVGLSDLPR+ TV VFCP+CH +F PKS RQ  +DGAYFGT+FPHL+L+ +P  IPA+  Q YVPR+YGF++H SS+Y+R  +E
Sbjct:   73 DEDGSWIAWFCSLRGNEFFCEVDEDYIQDDFNLTGLNSLVPYYDYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRGASFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPDVIPAKPAQQYVPRVYGFRIHRSSLYYRNHEE 273
[Close]
BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A7S2EKE4_9STRA (Casein kinase II subunit beta n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EKE4_9STRA)

HSP 1 Score: 271 bits (692), Expect = 3.800e-85
Identity = 131/221 (59.28%), Postives = 165/221 (74.66%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGM--------------------QGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQEKAAALNKSGKRRESRDSASR 861
            D+DGSWI+WF SLRGNEFFCE+DEDYIQDDFNLTGL+  VPYY++AL+++LD+E   E+ LT++Q+E+VE AAEMLYGLIHAR+I+T RGM                    QGQ  LPVGLSDLPR+ TV VFCP+CH +F PKS RQ  +DGAYFGT+FPHL+L+ +P  IPA+ TQ YVPR+YGFK+H+SS+Y R  +E     ++SG R  SR S +R
Sbjct:  133 DEDGSWIAWFCSLRGNEFFCEVDEDYIQDDFNLTGLNGLVPYYDYALDMVLDVEMPMEDALTEDQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRSASFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPDMIPAKPTQHYVPRVYGFKIHQSSLYFRNHEEGPEHRSESGGR-HSRKSKNR 352
[Close]
BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A7S1GN37_CYCTE (Casein kinase II subunit beta n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GN37_CYCTE)

HSP 1 Score: 273 bits (697), Expect = 5.620e-85
Identity = 130/222 (58.56%), Postives = 164/222 (73.87%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGM--------------------QGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQEKAAALNKS------GKRRESR 846
            D+DGSWI+WF SLRGNEFFCE+DEDYIQDDFNLTGL+  VPYY++AL+++LD+E   E+ LT+EQ+E+VE AAEMLYGLIHAR+I+T RGM                    QGQ  LPVGLSDLPR+ TV VFCP+CH +F PKS RQ  +DGAYFGT+FPHL+L+ +P  +PAR TQ YVPR++GFK+H+SS+YHR   E  + +  S      GK R++R
Sbjct:  207 DEDGSWITWFCSLRGNEFFCEVDEDYIQDDFNLTGLNGLVPYYDYALDMVLDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRSASFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPDMVPARPTQQYVPRVFGFKIHQSSLYHRNHAEGPSQIETSHRSSRKGKHRQTR 428
[Close]
BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A7S4AB83_9STRA (Casein kinase II subunit beta n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AB83_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.980e-84
Identity = 132/224 (58.93%), Postives = 167/224 (74.55%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGM--------------------QGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQE--KAAALNKSGKRRESRDSASRR 864
            D+DGSWI+WF SLRGNEFFCE+DEDYIQDDFNLTGLS  VPYY++AL++ILD+E   E+ LT+EQ+E+VE AAEMLYGLIHAR+I+T RGM                    QGQ  LPVGLSDLPR+ TV VFCP+CH +F PKS RQ  +DGAYFGT+FPHL+L+ +P  IPA+ +QTYVPR+YGFKV+ESS++++  +E     +++ S   R SRD   R+
Sbjct:  190 DEDGSWITWFCSLRGNEFFCEVDEDYIQDDFNLTGLSILVPYYDYALDMILDVEMPMEDSLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRTVAFGRCPRVYCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPDMIPAKPSQTYVPRVYGFKVNESSLFYKHHEEGPPKKSIDSSRNSRRSRDKNRRK 413
[Close]
BLAST of jgi.p|Trimin1|354160 vs. uniprot
Match: A0A7S2UQR9_9STRA (Casein kinase II subunit beta n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UQR9_9STRA)

HSP 1 Score: 270 bits (690), Expect = 5.300e-84
Identity = 128/221 (57.92%), Postives = 166/221 (75.11%), Query Frame = 1 
Query:  259 DDDGSWISWFVSLRGNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDEQREVVEGAAEMLYGLIHARFILTTRGM--------------------QGQSALPVGLSDLPRSCTVAVFCPKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRIYGFKVHESSVYHRARQE---KAAALNKSGKRRESRDS 852
            D+DGSWI+WF SLRGNEFFCE+DEDYIQDDFNLTGL+  VPYY++AL+++LD+E   E+ LT+EQ+E+VE AAEMLYGLIHAR+I+T RGM                    QGQ  LPVGLSDLPR+ TV VFCP+CH +F PKS RQ  +DGAYFGT+FPHL+L+ +P  IPA+  Q YVPR+YGFKVH+SS+Y+R  +E   K+   +++G+ R+ + +
Sbjct:  197 DEDGSWIAWFCSLRGNEFFCEVDEDYIQDDFNLTGLNGLVPYYDYALDMVLDVEMPMEDTLTEEQQEIVESAAEMLYGLIHARYIVTNRGMHAMYEKYRATGFGRCPHVFCQGQPVLPVGLSDLPRNYTVNVFCPRCHGLFFPKSTRQANIDGAYFGTTFPHLYLMTHPEIIPAKPAQNYVPRVYGFKVHQSSLYYRNHEESPPKSEGGSRTGRSRQQKST 417
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354160 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CJ70_9STRA2.480e-194100.00Casein kinase II subunit beta n=1 Tax=Tribonema mi... [more]
A0A1E7EUU7_9STRA3.130e-8759.73Casein kinase II subunit beta n=1 Tax=Fragilariops... [more]
A0A836CD25_9STRA1.860e-8658.02Casein kinase II subunit beta n=1 Tax=Tribonema mi... [more]
D8LMG2_ECTSI2.630e-8659.91Casein kinase II subunit beta n=2 Tax=Ectocarpus T... [more]
A0A7S4IQT0_9STRA1.760e-8561.69Casein kinase II subunit beta n=1 Tax=Odontella au... [more]
A0A7S2EDQ1_TRICV2.300e-8561.69Casein kinase II subunit beta n=1 Tax=Trieres chin... [more]
A0A7S2EKE4_9STRA3.800e-8559.28Casein kinase II subunit beta n=1 Tax=Ditylum brig... [more]
A0A7S1GN37_CYCTE5.620e-8558.56Casein kinase II subunit beta n=1 Tax=Cyclophora t... [more]
A0A7S4AB83_9STRA1.980e-8458.93Casein kinase II subunit beta n=2 Tax=Pseudo-nitzs... [more]
A0A7S2UQR9_9STRA5.300e-8457.92Casein kinase II subunit beta n=1 Tax=Attheya sept... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_213contigContig_213:18517..24028 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354160|estExt_Genemark1.C_Ctg_2130003
BRITEko00000,ko00001,ko03009
KEGG Pathwayko03008,ko04064,ko04137,ko04139,ko04310,ko04520,ko04712,ko05162,ko05168,ko05169,map03008,map04064,map04137,map04139,map04310,map04520,map04712,map05162,map05168,map05169
KEGG koko:K03115
GOsGO:0000003,GO:0001932,GO:0003006,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005956,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007623,GO:0008134,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009628,GO:0009648,GO:0009791,GO:0009987,GO:0010228,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019207,GO:0019220,GO:0019222,GO:0019538,GO:0019887,GO:0022414,GO:0030234,GO:0031323,GO:0031399,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0042325,GO:0042752,GO:0042753,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043549,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045859,GO:0048511,GO:0048518,GO:0048573,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051246,GO:0051338,GO:0060255,GO:0061458,GO:0065007,GO:0065009,GO:0071704,GO:0071900,GO:0080090,GO:0098772,GO:0140096,GO:1901564
Descriptionprotein kinase regulator activity
COG categoryDKT
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5041@1|root,KOG3092@2759|Eukaryota
Evalue1.13e-87
Seed ortholog2880.D8LMG2
Hectar predicted targeting categoryother localisation
TranscriptId354482
TrackFilteredModels1
ProteinId354160
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354160gene_17753Tribonema minus UTEX_B_3156 geneContig_213 18517..24028 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354160Trimin1|354160|estExt_Genemark1.C_Ctg_2130003Tribonema minus UTEX_B_3156 polypeptideContig_213 18517..23910 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17753_1exon_17753_1Tribonema minus UTEX_B_3156 exonContig_213 18517..18755 +
exon_17753_2exon_17753_2Tribonema minus UTEX_B_3156 exonContig_213 20283..20411 +
exon_17753_3exon_17753_3Tribonema minus UTEX_B_3156 exonContig_213 21259..21424 +
exon_17753_4exon_17753_4Tribonema minus UTEX_B_3156 exonContig_213 22260..22363 +
exon_17753_5exon_17753_5Tribonema minus UTEX_B_3156 exonContig_213 23132..23255 +
exon_17753_6exon_17753_6Tribonema minus UTEX_B_3156 exonContig_213 23710..24028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17753CDS_17753Tribonema minus UTEX_B_3156 CDSContig_213 18517..18755 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17753UTR3_17753Tribonema minus UTEX_B_3156 three_prime_UTRContig_213 23911..24028 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17753 ID=mRNA_17753|Name=jgi.p|Trimin1|354160|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1081bp|location=Sequence derived from alignment at Contig_213:18517..24028+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAGCCGAACAAGTAGAAAATCAGATAGATGCAGCGGTCGCAGATTT
AGAAGCGCGGACGCGGGGACTGACTGTCTCGCCAGCAGTCAACGGGACCA
CCGACGCAAGCAGAGGCAAAGGCGCGGCGGCAGAAGCACCGCTAAGTGAG
CAAGGGGAAGCAGCAGCGGCGAACGGCGAGGTCAGCGGCAGCAATGACGA
TCCCAGCGTGGAGGAGGAGGAGGCCGACGAAGATAGCAGCAGCGAGGTGT
CTGCCTCTGACGATGACGGGTCATGGATCAGCTGGTTTGTGAGCCTCAGA
GGGAACGAGTTCTTCTGTGAAATCGATGAGGACTACATACAGGACGACTT
CAATCTCACAGGACTCAGTTCTACAGTGCCATATTACGAGCACGCACTGG
AGCTGATCCTGGACCTGGAATTTTCCGCGGAAAATGGTCTGACGGACGAG
CAGCGGGAGGTGGTGGAAGGAGCCGCAGAAATGCTGTATGGTCTCATACA
CGCGCGCTTCATACTCACCACCAGGGGTATGCAGGGGCAGAGCGCACTGC
CAGTGGGTCTGTCAGATCTGCCGCGCAGCTGCACCGTGGCCGTCTTCTGC
CCAAAGTGCCACGACGTATTCCACCCCAAGTCTGCAAGACAGGGAGCAGT
GGATGGCGCGTATTTTGGCACGTCGTTTCCGCACCTGTTCCTGCTGTTGA
ATCCAAGCGCAATACCTGCGCGGTCTACACAGACATACGTGCCGCGCATC
TATGGTTTCAAGGTGCACGAGAGCAGCGTGTACCATCGGGCGCGGCAGGA
GAAAGCAGCAGCACTCAACAAATCGGGCAAGCGGCGTGAATCTCGAGATT
CGGCGTCGCGGCGCGCGTCAAGAGATTCCACGGGATCCGCGGCGACGGCG
GCGGCCGCTGCTGCGGGGGCAGCAGCAGGCGAGGCACAAGCTCTGCCGCA
AGGCCAGAAATAAGAGCTGCTGCGGCTGGCGCACTTGCCACAACAGCGCC
GCTGCCGGAGGCGCGATTTTGTTATCATATTATTACAGCTCAGTAGCGTG
CCTGCGGCTTTGTTTCGCTACCGGAAGACGG
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protein sequence of jgi.p|Trimin1|354160

>Trimin1|354160|estExt_Genemark1.C_Ctg_2130003 ID=Trimin1|354160|estExt_Genemark1.C_Ctg_2130003|Name=jgi.p|Trimin1|354160|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=321bp
MQAEQVENQIDAAVADLEARTRGLTVSPAVNGTTDASRGKGAAAEAPLSE
QGEAAAANGEVSGSNDDPSVEEEEADEDSSSEVSASDDDGSWISWFVSLR
GNEFFCEIDEDYIQDDFNLTGLSSTVPYYEHALELILDLEFSAENGLTDE
QREVVEGAAEMLYGLIHARFILTTRGMQGQSALPVGLSDLPRSCTVAVFC
PKCHDVFHPKSARQGAVDGAYFGTSFPHLFLLLNPSAIPARSTQTYVPRI
YGFKVHESSVYHRARQEKAAALNKSGKRRESRDSASRRASRDSTGSAATA
AAAAAGAAAGEAQALPQGQK*
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mRNA from alignment at Contig_213:18517..24028+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17753 ID=mRNA_17753|Name=jgi.p|Trimin1|354160|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5512bp|location=Sequence derived from alignment at Contig_213:18517..24028+ (Tribonema minus UTEX_B_3156 )
ATGCAAGCCGAACAAGTAGAAAATCAGATAGATGCAGCGGTCGCAGATTT
AGAAGCGCGGACGCGGGGACTGACTGTCTCGCCAGCAGTCAACGGGACCA
CCGACGCAAGCAGAGGCAAAGGCGCGGCGGCAGAAGCACCGCTAAGTGAG
CAAGGGGAAGCAGCAGCGGCGAACGGCGAGGTCAGCGGCAGCAATGACGA
TCCCAGCGTGGAGGAGGAGGAGGCCGACGAAGATAGCAGGTGTGTGATGT
GCCAACCTGTCCATCACGATCATAGCTCAGTGAAGATACCTTCTCGGATC
GCGAACTCAAATCTTCAGCTCACAGACTCGTTACTGAGGCGCAAATAGTT
TGTAAGCACTGGACAGCGCGCTGCCGTGGAGGCAATTACTCTCAACACAA
TGCTCATTAGAGATGAGCAAGGTTTGGCGACTTGAAGATTGGTTTGTGGG
TCTTGTAATTGGATCTTTTGCAGCGTGGTGACTAGTTACCGGCATGCATG
TCATCATAATTGTCAATGGATTCAAGCCCAAGGTTCCGCGCCTGCCTTTG
AAAGTAGATGCCGTGGGTTTGAGCACCCTTTCAAGGTGGTGGTGCACGGC
AGGCCTTTGATCTGATGCAGTCAGCGCTGGGCTGTCGCATCGCTCAGCAT
CGGTTTCACATATATGTGAGCAGCGCGCAAGCTCATGAACTGTCTACTTA
AGGTACAGTGTGCAGAGCAGTGGAGAGGTCCATATTATCATCTGCACCAG
GCAAGTATCCCTGTGCAGCGCGCGCTGTTCTGAGCTGGTGCTGTCACCTC
AGAGCCTGCTACTGTCAGCCACTGTGAGCTCTGCTGTCAGGGATTGCAGT
CACCAACGATTGAGATTGAGAGGTGGTCTAGCGGTGGCATATGGCTGCCT
TAGCTGATGTGCACCAGAGCTGATAGCCAGCACTGCCCACCAGCTATATG
TAGCAGTGATGGTGTCAGGGTGAACATGAGTTTTGAATGTGCGTTCATGC
TCTATGTAATAGAAGACATTCAGGCTCTACTAGCAGACACGTAGACAACA
GCATATCCTTAATCGGTGCAATTTTTGCTGTTCTTTGCAAGTATCAACAT
GCCTACATCCACCAACGAGTTATCAGCGCTATGTGTTGTATCATGGTCAC
CTATAATTGAAAGGAACTTATGCATCAACCCTTGTTGTTTATTGGTATCT
GCTTGATGGTGTCTAAGATGAGCTGAGCTTGTTGGTGACCGTAAATCTCA
ATGCATTGTGATCAGGCATTCCAAGGCCAGCTTTGCATCGAACCTTTTGT
CCAGAGAATACTTGTACATACACGCCACCATGACGTCTCGCGACTCTTCC
ATGTCAACATCGCTGCGGCGATGCCCTTCGCCAGCAGCTGTCTGTGTTGT
GATTGTAGGCCCTATGCAAGGGCCTGTTGTCATTGTAGATATTTTGGTCG
CAGTTTTGTTGCGCACCTTCAACCATGAGTTGTGCGGCGCCCCTTCCTGA
TGTCACGCCAACTCATGACTCATGACTCGCCACAACACCAACTTTTTCAA
ATTGTGGATCAGCTGGATCATGAACCTCATGCCTCCTTTTCAAACTTGAA
ATGCCACTTTCGCTTGCCGCTTGCGACGGTACGTAGCAACGATGGCGAAT
CTTGAATCAGCTGGTTTATATTTTTTCAAGTACAGTACTGAAAAATGCGT
GTGTGTGTATGCATTTGCCGCTCATGACTTGTGACTCCCCCCGAATGTGA
CTTTGACTCGCTGCAGCAGCGAGGTGTCTGCCTCTGACGATGACGGGTCA
TGGATCAGCTGGTTTGTGAGCCTCAGAGGGAACGAGTTCTTCTGTGAAAT
CGATGAGGACTACATACAGGACGACTTCAATCTCACAGGACTCAGGTACC
GCGAATTCGAAAAGTCTTTTTAGTACAGAGAGAGCGAATGGCGTAAAGTT
GAAGTTCTGAGGTCCTGCCAATCTGTTACGTACTGTTATGCAACTGTTTT
CTGTGGATCCAGCTGTATTGCTGCTGTTGCATTGCTCTGTTTGTAGTCTT
CCCGAAGTGTCAAATGTTGGCCTCTTGCACCTCAGTTTAAAAGTGCTGTT
CATGTCAATGGTTCTGCAGCATGCTGAATGTTGTCGTCATGGATGCTTTG
TGTGAGACATATTGAATGCATGTTCCCCAAGCACGCTCAACGTTCAAGTT
GTCTTGAGTCTCATCTCGAGACTCTTCTGCTGGGTCTGGTGGTGGCACAC
CGGGCCGGCTACACCAGCCGCTAGTGCCATTGACTGAATGCATGCCAGTG
ACGAAAGCCAGTGATTCAGGCAAAAGCTTTGGCCACTGGTAGACCTCAAA
TGTTTTTGCACTCAGCATTGTTCGTGTTTGCGGTAGCAGCTGCACCTATG
CTGCTGATGACCATCAGATCAGGTACCACAGTTCCAGCCGGACCTTGGCT
GGTGTAGACTAGCTCGTGTTGGGCATGATGTACGCTTTCGCGCTTCTGCC
TTGCCTTGCTGAACAAGGTTACCAATACGATTCGTCACTCGTCTGCCTTC
TTCACAAATGTCATGACCACTTCTTTTTCATTTTAGCCCCATGGCCGATG
GTGCGTACCAATAGATCGCTCTCAACACACTCTCTGCGTAGCTGGTTCTT
CCATTTCGGTACCCTTCGCATTTCGGTACCCTTCGCCATGCTTACAATTA
TCACCTTCCGCTGAAACGGTTCTGTACACTGTGCTATTGCAGTTCTACAG
TGCCATATTACGAGCACGCACTGGAGCTGATCCTGGACCTGGAATTTTCC
GCGGAAAATGGTCTGACGGACGAGCAGCGGGAGGTGGTGGAAGGAGCCGC
AGAAATGCTGTATGGTCTCATACACGCGCGCTTCATACTCACCACCAGGG
GTATGCAGGTATGTGCGTCACGTACAGTATGTATGTGTGTGTCTATGCAT
GTACGTCAATGTTCATGTATGCACACGCTGTTGAACAGTGTAATTTTACA
GATGTACGTCTGGTTAGAAGATGATCTTATGAATCTGGTCCTGGTAGCAC
TTTCTGCAATATACATTGGTATTGTTGGTTTGATGTAGTTCCGTTTCTGC
AGGATTTGGTGGACTTGAGTCTTCAACTTCAAGTAATCCAGCACTCATCA
CGTTAGTTGTCACCGACGCTGCGGTGCGTGCGTGCTTCAATGGGTAGGTA
CGTCAGAGCTGATGTGCGAGGTATGTGCAGACATAGTCAAGTGATCAACT
TCAAGTATTCTGGTTCGACGCGTGCTCGCTTTGGTGGTCACGTGGAGATG
ATGTGCAGATTCTGCACAGACATGACGTATCGACGTGGTTTGGCAACCAG
TCCATTCGCACTCATGGTGACACCAGTGTTTTTTGCAGCTCATGCTCTAT
AATCATCCCTAAAGGCAATGAATGCCCATGTGCGCCGTCGAGCATCACCT
CGTCGCACATATAGACTTCAAGAGCACGTGACTCTCCTGGCAACACTCTT
GAAGTAGTCTCGAGCCTTTTGAGCAATTCTAGGTATGTGTGTGCTGTGGT
GCAGCGTACGCTAATCAATACCCAAGCGTGGCTTCTGATCTGTGCCCACG
CGTCCACTGCCAGGGACCAGAACATGAATGGTTTTGACTTCTGACCAATG
CTATTGGTTCGCTGTGACGCTGTTCCCCCACAGCGTATGCTCCAAAAATA
CCAAAGCGCAGCTTTTGGGCGGTGCCCCCGGGTTCACTGCCAGGGGCAGA
GCGCACTGCCAGTGGGTCTGTCAGATCTGCCGCGCAGCTGCACCGTGGCC
GTCTTCTGCCCAAAGTGCCACGACGTATTCCACCCCAAGTCTGCAAGGTG
AGCCGGAGTACGGGAGGGGGAGGGGGGGGGGGGGGGTAATTCACAATGTA
CTTCAAAGCAGAAAATTGATGAAGTGCGTTGGTTGCAAACAACTGGCTTC
TCAAAACCTCACTTGAAGTGAATGGCTGCTTCTTCAATACAATACAAGTT
TTGCGGCTAACCACACCTTGTCACCTAGAGCTCTACATTATTTGGATTTG
TTTCCAGTCTTCAGATGAGTACTCTAAGCTTCCATTGTCATGAGTCTTGT
TGGAGCTTGAGTGCTGTAGTTGACGACTTTGCAAGTGCTCCTCATGCAAT
GCAGAGGAGTGGAGCAAGATCATGGCGCATTGTAATACTGTCAACTTCAC
TTTGAAGTAGTGCGCATTGTCGCTGAACACATGTGGTGCGATGCAAAACA
TACGTTGTCCCTAGCGTGCAGCGCTTGGTTGCAGGAGTGATTTTCAACGA
TCATTCACGTTTTAAGACTGCATGACGTACCTGGAGGTGACTTTAGGCCA
ATCTTGTGGGTTCCCTCCTACGCGTTTGGTGAAAGACGTCATGCAGACAA
TCATCTGGTCTGCTTCTGCTGCACATGAGGCTCGTGGCTCTGCCAAGACA
ACCCTGGACGCTGGCCGTACTCCGCTTCCCTGCGGCGTGTGCCGTTTGTG
TGCATACTGTTTTGTACTTCTGCTGCACACGAGGCTTGTGGCTCTGCCGA
GACAGCCATGGCTGCTCACTGTACCTCGCTGCCTTGCGGTGTGCGTGCCA
TTGTGTCCACTGCAGACAGGGAGCAGTGGATGGCGCGTATTTTGGCACGT
CGTTTCCGCACCTGTTCCTGCTGTTGAATCCAAGCGCAATACCTGCGCGG
TCTACACAGACATACGTGCCGCGCATCTATGGTTTCAAGGTGAGCTTCTG
CAACTTCAAGTATGAACGCTTAAAGAAGTCAACATGTACAACTCAACATG
AGTGCGCACTCCTGCTGCTACATATGCCGCACCTCGCTGTTGTCTTCAGC
CTAGAGGTGTTTGCCAGCGCGCTTCTGCACTCTGTAGTACCTCGCAATGT
TGCAAGGTGTCTCTGCGCGCCACTGCCAGCCAAAGGGCATCATCAGCAGC
ACCTACGAAGAGAGGCTGCTGCAGCAACACATCTGCGTGCTTTTACAAAA
CTCTGGAGGCTTTCCAGAGGAACGTGACAGCAGCAGAGAAATCGAGCAGC
GTGCGCGGCAGCGCGCAGCAGGGGCAGGCAGCAGTGCTCAGCACATCCTC
TGCACGCATCGCACACCGTACATACGGTCACTCTGCTGCCTCTCACTGTC
AAGACTGCTGACCGCTGCCACGCATCACTGTCCGTCGGCGCAGGTGCACG
AGAGCAGCGTGTACCATCGGGCGCGGCAGGAGAAAGCAGCAGCACTCAAC
AAATCGGGCAAGCGGCGTGAATCTCGAGATTCGGCGTCGCGGCGCGCGTC
AAGAGATTCCACGGGATCCGCGGCGACGGCGGCGGCCGCTGCTGCGGGGG
CAGCAGCAGGCGAGGCACAAGCTCTGCCGCAAGGCCAGAAATAAGAGCTG
CTGCGGCTGGCGCACTTGCCACAACAGCGCCGCTGCCGGAGGCGCGATTT
TGTTATCATATTATTACAGCTCAGTAGCGTGCCTGCGGCTTTGTTTCGCT
ACCGGAAGACGG
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Coding sequence (CDS) from alignment at Contig_213:18517..24028+

>mRNA_17753 ID=mRNA_17753|Name=jgi.p|Trimin1|354160|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=963bp|location=Sequence derived from alignment at Contig_213:18517..24028+ (Tribonema minus UTEX_B_3156 )
ATGCAAGCCGAACAAGTAGAAAATCAGATAGATGCAGCGGTCGCAGATTT
AGAAGCGCGGACGCGGGGACTGACTGTCTCGCCAGCAGTCAACGGGACCA
CCGACGCAAGCAGAGGCAAAGGCGCGGCGGCAGAAGCACCGCTAAGTGAG
CAAGGGGAAGCAGCAGCGGCGAACGGCGAGGTCAGCGGCAGCAATGACGA
TCCCAGCGTGGAGGAGGAGGAGGCCGACGAAGATAGCAGCAGCGAGGTGT
CTGCCTCTGACGATGACGGGTCATGGATCAGCTGGTTTGTGAGCCTCAGA
GGGAACGAGTTCTTCTGTGAAATCGATGAGGACTACATACAGGACGACTT
CAATCTCACAGGACTCAGTTCTACAGTGCCATATTACGAGCACGCACTGG
AGCTGATCCTGGACCTGGAATTTTCCGCGGAAAATGGTCTGACGGACGAG
CAGCGGGAGGTGGTGGAAGGAGCCGCAGAAATGCTGTATGGTCTCATACA
CGCGCGCTTCATACTCACCACCAGGGGTATGCAGGGGCAGAGCGCACTGC
CAGTGGGTCTGTCAGATCTGCCGCGCAGCTGCACCGTGGCCGTCTTCTGC
CCAAAGTGCCACGACGTATTCCACCCCAAGTCTGCAAGACAGGGAGCAGT
GGATGGCGCGTATTTTGGCACGTCGTTTCCGCACCTGTTCCTGCTGTTGA
ATCCAAGCGCAATACCTGCGCGGTCTACACAGACATACGTGCCGCGCATC
TATGGTTTCAAGGTGCACGAGAGCAGCGTGTACCATCGGGCGCGGCAGGA
GAAAGCAGCAGCACTCAACAAATCGGGCAAGCGGCGTGAATCTCGAGATT
CGGCGTCGCGGCGCGCGTCAAGAGATTCCACGGGATCCGCGGCGACGGCG
GCGGCCGCTGCTGCGGGGGCAGCAGCAGGCGAGGCACAAGCTCTGCCGCA
AGGCCAGAAATAA
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