mRNA_15920 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354127
Unique Name	mRNA_15920
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354127 vs. uniprot
Match: A0A835Z370_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z370_9STRA)

HSP 1 Score: 378 bits (971), Expect = 6.230e-130
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 3

Query:  258 MVMQLDRSDGVGATVDPGAFAVRYIDLINTCTRTGAAAWTAAVSGLQYAGLDLEAFVPLSTDAAAXXXXXXXXPAKALDVGALAALCDARLLDFGKAALDWSAVPPCSAAQCADMVACASQVALRLAMLQEEWSADSPAAVRRREFGLRVSVPSVAPAPYVPPPGVLELLLREDLGVAFERGVGGGATVFTVAPEEVAAWAKANSLY 878
            MVMQLDRSDGVGATVDPGAFAVRYIDLINTCTRTGAAAWTAAVSGLQYAGLDLEAFVPLSTDAAAXXXXXXXXPAKALDVGALAALCDARLLDFGKAALDWSAVPPCSAAQCADMVACASQVALRLAMLQEEWSADSPAAVRRREFGLRVSVPSVAPAPYVPPPGVLELLLREDLGVAFERGVGGGATVFTVAPEEVAAWAKANSLY
Sbjct:    1 MVMQLDRSDGVGATVDPGAFAVRYIDLINTCTRTGAAAWTAAVSGLQYAGLDLEAFVPLSTDAAAXXXXXXXXPAKALDVGALAALCDARLLDFGKAALDWSAVPPCSAAQCADMVACASQVALRLAMLQEEWSADSPAAVRRREFGLRVSVPSVAPAPYVPPPGVLELLLREDLGVAFERGVGGGATVFTVAPEEVAAWAKANSLY 207

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354127 vs. uniprot

BLAST of jgi.p|Trimin1|354127 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z370_9STRA	6.230e-130	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_210	contig	Contig_210:121891..124836 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354127\|estExt_Genemark1.C_Ctg_2100019
Hectar predicted targeting category	other localisation
TranscriptId	354449
Track	FilteredModels1
ProteinId	354127

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354127	gene_15920	Tribonema minus UTEX_B_3156	gene	Contig_210 121891..124836 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354127	Trimin1\|354127\|estExt_Genemark1.C_Ctg_2100019	Tribonema minus UTEX_B_3156	polypeptide	Contig_210 122033..124364 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15920_4	exon_15920_4	Tribonema minus UTEX_B_3156	exon	Contig_210 121891..122323 -
exon_15920_3	exon_15920_3	Tribonema minus UTEX_B_3156	exon	Contig_210 123243..123559 -
exon_15920_2	exon_15920_2	Tribonema minus UTEX_B_3156	exon	Contig_210 124349..124539 -
exon_15920_1	exon_15920_1	Tribonema minus UTEX_B_3156	exon	Contig_210 124755..124836 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15920	UTR3_15920	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_210 121891..122032 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15920	CDS_15920	Tribonema minus UTEX_B_3156	CDS	Contig_210 124349..124364 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_15920	UTR5_15920	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_210 124755..124836 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_210:121891..124836-
coding sequence from alignment at Contig_210:121891..124836-

spliced messenger RNA

>mRNA_15920 ID=mRNA_15920|Name=jgi.p|Trimin1|354127|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1023bp|location=Sequence derived from alignment at Contig_210:121891..124836- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTCTTGCACAGGCTGCGGTGGCGCAGGCACAGGCGGAGAACAGGCAACTG
CTGTCGTGCGAATGGGAAAGTCTAGCGCGACGCTGCAGCGTCTTGGCAGA
GGACGCCGCGTCCGGAGCACTGCTGCAGCAGGTGGACCTTGACGCGGCGG
ACCCGGAGTCTGATTACACGCGCTGGGCGCTGGAGACGGAGCTGTGCGGG
AAGGCGCAGAACAGGGGGCGGCCCGCCGTGCAGGCAGCGCTCAGCAGATT
TCAGCGCATGGTCATGCAGCTTGACAGGTCCGACGGCGTCGGCGCGACAG
TCGACCCCGGCGCCTTCGCAGTACGCTACATTGACCTCATCAACACATGC
ACGCGCACGGGCGCCGCGGCGTGGACGGCCGCCGTGAGCGGCCTGCAGTA
CGCGGGCCTCGACCTCGAGGCCTTCGTGCCGCTGAGCACTGATGCAGCAG
CAGCGGCAGCAGCGGCGGCGGCGGCGCCGGCCAAGGCGCTGGACGTCGGC
GCGCTCGCCGCGCTCTGCGACGCGCGCCTGCTGGACTTTGGCAAGGCGGC
GCTCGACTGGAGCGCCGTGCCTCCGTGCAGCGCAGCACAGTGCGCGGACA
TGGTCGCGTGCGCATCGCAGGTCGCGCTGCGCCTCGCAATGCTGCAGGAG
GAGTGGTCCGCGGACAGCCCCGCGGCGGTGCGGCGGCGCGAGTTCGGGCT
GCGCGTGAGCGTGCCGTCCGTCGCGCCGGCGCCGTACGTGCCGCCGCCGG
GCGTGCTGGAGCTGCTGCTGCGGGAGGACCTGGGGGTGGCGTTTGAGCGC
GGCGTGGGGGGGGGGGCGACGGTGTTTACGGTGGCGCCAGAGGAGGTGGC
CGCGTGGGCGAAGGCCAACTCGCTGTATTGATTGATGGGTGGCGGTTGAA
GTGGTTTGAGTTCAAGCCGCAGCGCGTTGGTTGTATGGTGTTTCATCAGA
GAGTTTCGCAACACACAGACTTTAGCAGCATTCCATGTTTTTTTCATCCA
AAAAAGACAACAATCACCCCTCA

protein sequence of jgi.p|Trimin1|354127

>Trimin1|354127|estExt_Genemark1.C_Ctg_2100019 ID=Trimin1|354127|estExt_Genemark1.C_Ctg_2100019|Name=jgi.p|Trimin1|354127|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=208bp
MVMQLDRSDGVGATVDPGAFAVRYIDLINTCTRTGAAAWTAAVSGLQYAG
LDLEAFVPLSTDAAAAAAAAAAAPAKALDVGALAALCDARLLDFGKAALD
WSAVPPCSAAQCADMVACASQVALRLAMLQEEWSADSPAAVRRREFGLRV
SVPSVAPAPYVPPPGVLELLLREDLGVAFERGVGGGATVFTVAPEEVAAW
AKANSLY*

mRNA from alignment at Contig_210:121891..124836-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15920 ID=mRNA_15920|Name=jgi.p|Trimin1|354127|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2946bp|location=Sequence derived from alignment at Contig_210:121891..124836- (Tribonema minus UTEX_B_3156 )
CTCTTGCACAGGCTGCGGTGGCGCAGGCACAGGCGGAGAACAGGCAACTG
CTGTCGTGCGAATGGGAAAGTCTAGCGCGACGGTGAGAACTGCGCCTCTT
TCAGTACCTGCTGCTTTGTGTGCTGCTGCGCTCATCGAGTGCACAAAGGT
ATTCATGGTCAAAGTGGTACTGCAGGTGCAGGCATGTGCTGCCACCACAT
GATGTCTTTGACACGTGCTACACCCCTTGCACGCTCGCACACGCAGCCTG
ACGCTCGCCACCCTCACCTTCCCCCGCACGCGCCCCTCGCGCCGCAGCTG
CAGCGTCTTGGCAGAGGACGCCGCGTCCGGAGCACTGCTGCAGCAGGTGG
ACCTTGACGCGGCGGACCCGGAGTCTGATTACACGCGCTGGGCGCTGGAG
ACGGAGCTGTGCGGGAAGGCGCAGAACAGGGGGCGGCCCGCCGTGCAGGC
AGCGCTCAGCAGATTTCAGCGCATGGTCATGCAGCTTGGTGAGGGGTTGT
TAATATTGGCTCTGTGCACATGGCACACATGGCAGGACGCGATCTGGCGG
CGCGTGCGCTCTGTGCGCTGGAGGCGGAGACTGTAGGATGACAGTGACGG
AGTTCGATCAGTGCTCAGCAGGCTCCAGCGCTCGCTCGTGCGGCTCTGTC
GTGCAACTCTGTAAGCGACGGCTGATGGACGAGGATGTGTTGGACAGGAC
GTGGCCTGACGCAGCGCGTGCGCTGGGCGCCGCAGGTGGATTGAAGGGGG
GGGGGGGGGTACCCCCCCAGCAGCGCTCGCGCTCAGCATGTTCCAGCCTG
CTCGATGAGTGGGTTGCGGCGCCTGCTTGTAAATTTTGATCAGTGGCCGT
TGGCCGGCACACTACATAGATGCCCCATGGCTTCATCACCAGCGATACAT
CGGATGCTGCGCACCAAACAGGATGCTGCTGTCTGCATGGCATCTGACTG
ACGCAGTTGTGACTTGCTCAGGGTGTACGTCACAGGACGTGCCACGCAAA
AGTGATCATTGGGATGCCATGACGCTGGAGAGAGTGCTTGGAATGCAGCA
CATCATTGGTCCCGCATCTGGCTGTGCAGCTCTGTTCCATAAGCAAAAGG
CAACAGCTGACCTACATGCACCTGCGGCACGTTAAAACATGCTCACAATC
CGTACAACGGCTACGCGTCCAGTTGCGCACAGCGCTTGAACTGGTCCATC
TCCACTTGACCCATGCACGAGCCTGCATGCCAACCTACCCGCGCCCGCTG
CTGCCGCCGCCGCCGCCGCTGCTGCAGACAGGTCCGACGGCGTCGGCGCG
ACAGTCGACCCCGGCGCCTTCGCAGTACGCTACATTGACCTCATCAACAC
ATGCACGCGCACGGGCGCCGCGGCGTGGACGGCCGCCGTGAGCGGCCTGC
AGTACGCGGGCCTCGACCTCGAGGCCTTCGTGCCGCTGAGCACTGATGCA
GCAGCAGCGGCAGCAGCGGCGGCGGCGGCGCCGGCCAAGGCGCTGGACGT
CGGCGCGCTCGCCGCGCTCTGCGACGCGCGCCTGCTGGACTTTGGCAAGG
CGGCGCTCGACTGGAGCGCCGTGCCTCCGTGCAGCGCAGCACAGGTTAGA
GTATCGCCAGTGTATCCCCCTCTATCTTTTGGACTTGCGCAGGCTGTGAC
TGCCCTTGCCATGTGTTCATTGCTTGCAATTCCTTGATCTGTTTTGATAT
AGCGTTCAGGAGCCTGAGGTTCATGGCATTGCTCTGCATTATTTGCTGAC
TTCTGCAGCCTCATGATAGCGCAAAGTCTGCGTGTTGTGCCTGCCAATGT
CGTATTTGCAAGACGTGCCCCCGAACATCAACCAGTTGTTGCACATAGCT
GAGTGCGTGTCACCACTGATGTACATCACTGTATATGCAAGCAAGACTGA
AGGCTTTAAGATGTGGGCTTGGCATTCACACTTTTTACTAGTATAAGCGA
TGTTTGGACCAACAATGTCTGGAGCAATCAATCACCTCTCCTCTCAAACG
CACCCCACCCAGCCTCTGCATGGGTTGTGGAGGTCAACTGACCCGTCTGG
CTCACAAATGCGGTGCAGCGCACCCTGTTACTAGGCTATCAGCAAATGGA
ATTGCGCACCATTGACGATCCCTGCTTGTCTGTCAAGCTGCGCCCACTAT
GCTTGCATATACGTCGAGGATGGAGCGTCTGGTTTAGAATCGCAACGGGG
GGGTATTAGCCAAGGCCTTAATGAGACGAGGCTGTGCACAATCTCCCTGC
AAGGGGCGCAGTGCCGCGTGCAAAAGTACCTGCCCCTGCTGCTTGATCAT
TGACGAATGGCATCACCCGTGCACGTGGTCTCCCGGTATCGCTCGGGCTG
CCTGACAGTGCATCGTCACAACATCGGAGGAGTCCGAGGGACTCCATCCC
CCTCCCCCCCTCAGCCCCAACCTACCTCGTGCCACGTTTCATCACGTGCC
ACATGTGCATTTGAGTCTGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCG
CCTTTGGCCACAGTGCGCGGACATGGTCGCGTGCGCATCGCAGGTCGCGC
TGCGCCTCGCAATGCTGCAGGAGGAGTGGTCCGCGGACAGCCCCGCGGCG
GTGCGGCGGCGCGAGTTCGGGCTGCGCGTGAGCGTGCCGTCCGTCGCGCC
GGCGCCGTACGTGCCGCCGCCGGGCGTGCTGGAGCTGCTGCTGCGGGAGG
ACCTGGGGGTGGCGTTTGAGCGCGGCGTGGGGGGGGGGGCGACGGTGTTT
ACGGTGGCGCCAGAGGAGGTGGCCGCGTGGGCGAAGGCCAACTCGCTGTA
TTGATTGATGGGTGGCGGTTGAAGTGGTTTGAGTTCAAGCCGCAGCGCGT
TGGTTGTATGGTGTTTCATCAGAGAGTTTCGCAACACACAGACTTTAGCA
GCATTCCATGTTTTTTTCATCCAAAAAAGACAACAATCACCCCTCA

Coding sequence (CDS) from alignment at Contig_210:121891..124836-

>mRNA_15920 ID=mRNA_15920|Name=jgi.p|Trimin1|354127|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=624bp|location=Sequence derived from alignment at Contig_210:121891..124836- (Tribonema minus UTEX_B_3156 )
ATGGTCATGCAGCTTGACAGGTCCGACGGCGTCGGCGCGACAGTCGACCC
CGGCGCCTTCGCAGTACGCTACATTGACCTCATCAACACATGCACGCGCA
CGGGCGCCGCGGCGTGGACGGCCGCCGTGAGCGGCCTGCAGTACGCGGGC
CTCGACCTCGAGGCCTTCGTGCCGCTGAGCACTGATGCAGCAGCAGCGGC
AGCAGCGGCGGCGGCGGCGCCGGCCAAGGCGCTGGACGTCGGCGCGCTCG
CCGCGCTCTGCGACGCGCGCCTGCTGGACTTTGGCAAGGCGGCGCTCGAC
TGGAGCGCCGTGCCTCCGTGCAGCGCAGCACAGTGCGCGGACATGGTCGC
GTGCGCATCGCAGGTCGCGCTGCGCCTCGCAATGCTGCAGGAGGAGTGGT
CCGCGGACAGCCCCGCGGCGGTGCGGCGGCGCGAGTTCGGGCTGCGCGTG
AGCGTGCCGTCCGTCGCGCCGGCGCCGTACGTGCCGCCGCCGGGCGTGCT
GGAGCTGCTGCTGCGGGAGGACCTGGGGGTGGCGTTTGAGCGCGGCGTGG
GGGGGGGGGCGACGGTGTTTACGGTGGCGCCAGAGGAGGTGGCCGCGTGG
GCGAAGGCCAACTCGCTGTATTGA