mRNA_15928 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A835Z1N5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1N5_9STRA) HSP 1 Score: 250 bits (638), Expect = 9.880e-75 Identity = 448/448 (100.00%), Postives = 448/448 (100.00%), Query Frame = 1 Query: 1 TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFQQGIWACPAAPHRVRLFXXXXXXXXXXXXXXXXXXXXRHALEEDPSSVPTLVXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXYEAMELRAGNAREARDVYERGLAASMAR 1344 TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFQQGIWACPAAPHRVRLFXXXXXXXXXXXXXXXXXXXXRHALEEDPSSVPTLVXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXYEAMELRAGNAREARDVYERGLAASMAR Sbjct: 1 TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFQQGIWACPAAPHRVRLFXXXXXXXXXXXXXXXXXXXXRHALEEDPSSVPTLVXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXYEAMELRAGNAREARDVYERGLAASMAR 448
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S4DG14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG14_HETAK) HSP 1 Score: 129 bits (324), Expect = 1.040e-29 Identity = 67/115 (58.26%), Postives = 83/115 (72.17%), Query Frame = 1 Query: 1 TELSLKVEAELLGQYDELVPGPMPGQR-ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342 T LS KV +EL+ YDE VPGP P + AR LPINLDL++Y A+QAMI GD +R+YK+C+ELDPRDGR W+ LAR+E ++ A L+ GL+ S NPYLLQAYGVMEE Sbjct: 116 TTLSKKVYSELMSTYDEQVPGPDPSKPPARALPINLDLMTYHARQAMIKGDEAVGLRIYKKCLELDPRDGRAWLALARHESRRKRFEVAEKLFLKGLTYSRGNPYLLQAYGVMEE 230
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: D7FP63_ECTSI (PsbB mRNA maturation factor Mbb1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP63_ECTSI) HSP 1 Score: 130 bits (326), Expect = 1.060e-28 Identity = 73/128 (57.03%), Postives = 84/128 (65.62%), Query Frame = 1 Query: 1 TELSLKVEAELLGQYDELVPGPMP------------GQR--ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342 TELS KVEAEL +YD +VPGP GQ RPL INLDLLSY+AKQ + G+ EA RLY+ CVELDPRDGRGW+GLAR K +A+ L+E GL N DNPYLLQA+ VMEE Sbjct: 296 TELSAKVEAELFEEYDAMVPGPAASAVGNNAGGDGAGQERTGRPLKINLDLLSYQAKQKNMKGNYREARRLYRTCVELDPRDGRGWLGLARQMQKIHKYDKAQRLFEAGLENCADNPYLLQAFAVMEE 423
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S1XW26_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW26_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.190e-21 Identity = 53/110 (48.18%), Postives = 71/110 (64.55%), Query Frame = 1 Query: 1 TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYG 330 ++LS +VE LL YDE VP P P R RPL +NLDLL+Y A+ G EAV++++RC+ LDP DGR W+ LAR G +A+ L+E G+ P NP++LQAYG Sbjct: 22 SDLSRRVEESLLALYDEQVPAP-PKARRRPLKVNLDLLNYSARNLKRKGRLNEAVKVWQRCLRLDPHDGRAWLALARMSANAGGHTKAKQLFEEGIRFCPGNPFILQAYG 130
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S3B3F3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3B3F3_9EUKA) HSP 1 Score: 89.0 bits (219), Expect = 1.080e-16 Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = 1 Query: 82 ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342 +RPL INLDLL+++A+ + GD A YKRC++L+P+DGR W+GL++ +QG A L + GL P NPYLLQA+G ++E Sbjct: 64 SRPLRINLDLLTHRARVLVQRGDRKGAAATYKRCMQLEPQDGRAWLGLSQLRRRQGREEEAARLLQGGLRVDPANPYLLQAWGTLQE 150
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S2XUS2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUS2_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 1.220e-15 Identity = 47/133 (35.34%), Postives = 72/133 (54.14%), Query Frame = 1 Query: 40 QYDELVPGP----------MPGQRARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQG----------------------NSARARALWETGLSNSPDNPYLLQAYGVMEE 342 ++D +PGP P + RP+ ++ DLL+++AKQA+ + T A LY+RC++L+PRD R W+GLAR E + G N +A+ +++ GL P+NPYLLQ GV+EE Sbjct: 6 RFDVQIPGPDAGGISPVVQKPPVKTRPVGLHFDLLAHQAKQALRNKNVTLAAALYRRCLQLNPRDARAWLGLARIETRGGVPLPTKGNAEGPGKPRHWSSHLNYVKAKEIYQQGLRRCPNNPYLLQGLGVLEE 138
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: W7TNM5_9STRA (PsbB mRNA maturation factor n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNM5_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 5.440e-15 Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 1 Query: 7 LSLKVEAELLGQYDELVPGPMPGQRA-RPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342 LS V +L + + V P R +PLP LDLL+Y AK+A+ + EA R+Y+RC+ELD DGR ++GLAR E ++ N A+A++E L DNP++LQAYGV ++ Sbjct: 291 LSKAVNERMLEEKFDNVRAPYREPREPKPLPYQLDLLTYYAKEALRKRNVPEAARIYQRCMELDRYDGRAYIGLARIEGRRRNGTAAQAVYEEALRWCADNPFVLQAYGVFQQ 403
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A7S1TD61_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TD61_9RHOD) HSP 1 Score: 86.3 bits (212), Expect = 1.960e-14 Identity = 46/116 (39.66%), Postives = 72/116 (62.07%), Query Frame = 1 Query: 7 LSLKVEAELLGQYDELVP---GPMPGQR-ARPLPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342 L KV+ L+ + D + P G + +RPL IN+DL + A+Q+ G+++EA+RL++RCV++DP DGRGW+GLAR +G +R + + N +LLQA+G+MEE Sbjct: 31 LERKVKEVLMDEEDRVPPLGAGSLENYLPSRPLKINVDLSHFHARQSQKRGNSSEALRLFRRCVDMDPYDGRGWLGLARLLFLRGEEEASRETFRNAVRYCRSNSHLLQAWGIMEE 146
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A5J4YY57_PORPP (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YY57_PORPP) HSP 1 Score: 75.1 bits (183), Expect = 9.950e-11 Identity = 37/84 (44.05%), Postives = 53/84 (63.10%), Query Frame = 1 Query: 91 LPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNSPDNPYLLQAYGVMEE 342 L IN+DL +A+ A+ EA RL++RCVEL+ D RGW+GLAR E ++ N R ++ L +PYLLQA+GV+E+ Sbjct: 178 LKINVDLAHSRARSAVKRAQLDEAARLFRRCVELNRYDARGWLGLARIEFRRKNYEEMRRVFSAALKLLRKSPYLLQAWGVLEQ 261
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Match: A0A1Z5JMI6_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JMI6_FISSO) HSP 1 Score: 74.7 bits (182), Expect = 1.410e-10 Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = 1 Query: 91 LPINLDLLSYKAKQAMIAGDATEAVRLYKRCVELDPRDGRGWMGLARYEMKQGNSARARALWETGLSNS-------PD---NPYLLQAYGVMEE 342 LPIN D L+Y AK+ M G EA LY+R VE+DPRDGR ++GL+R ++ + AR G++NS PD NP+LLQA G +EE Sbjct: 261 LPINADRLNYMAKKEMKKGRVEEAEELYERAVEIDPRDGRAYLGLSRCAQRRQDFKLAREWLNLGIANSASTFNGNPDRGANPFLLQALGCLEE 354 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|136726 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15928 ID=mRNA_15928|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1344bp|location=Sequence derived from alignment at Contig_210:158608..159951- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ACCGAGCTGAGCCTCAAGGTCGAGGCGGAGCTCCTGGGGCAATACGACGAback to top protein sequence of jgi.p|Trimin1|136726 >Trimin1|136726|gw1.210.40.1 ID=Trimin1|136726|gw1.210.40.1|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=448bp TELSLKVEAELLGQYDELVPGPMPGQRARPLPINLDLLSYKAKQAMIAGDback to top mRNA from alignment at Contig_210:158608..159951- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15928 ID=mRNA_15928|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1344bp|location=Sequence derived from alignment at Contig_210:158608..159951- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_210:158608..159951- >mRNA_15928 ID=mRNA_15928|Name=jgi.p|Trimin1|136726|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1344bp|location=Sequence derived from alignment at Contig_210:158608..159951- (Tribonema minus UTEX_B_3156 )back to top |