mRNA_1142 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|1332
Unique NamemRNA_1142
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A835ZIS8_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS8_9STRA)

HSP 1 Score: 658 bits (1698), Expect = 1.380e-238
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 3 
Query:   42 MRLVWWVGWAAGLAGASTSGPQVMPACVAPSRELQTCGGVSEALAGVRRRDRERLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPAVSRDLAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE 1004
            MRLVWWVGWAAGLAGASTSGPQVMPACVAPSRELQTCGGVSEALAGVRRRDRERLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPAVSRDLAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE
Sbjct:    1 MRLVWWVGWAAGLAGASTSGPQVMPACVAPSRELQTCGGVSEALAGVRRRDRERLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPAVSRDLAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHHGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPVNHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHYGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASMWGTVACGCFVGGDVGGGVWRASFACYIQE 321
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A835Z453_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z453_9STRA)

HSP 1 Score: 255 bits (652), Expect = 3.870e-82
Identity = 127/128 (99.22%), Postives = 128/128 (100.00%), Query Frame = -3 
Query:  432 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY 815
            MQAKVTIMGP+LEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY
Sbjct:    1 MQAKVTIMGPKLEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIY 128
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A836C6W3_9STRA (Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C6W3_9STRA)

HSP 1 Score: 268 bits (684), Expect = 5.310e-80
Identity = 135/140 (96.43%), Postives = 136/140 (97.14%), Query Frame = -3 
Query:  396 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSGTVVHRASHITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYVNPDIIEISRGS 815
            MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMS TVVHR   ITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYVNPDIIEISRG+
Sbjct:    1 MQAKVTIMGPELEIVAIYVNPDIIKISRGSHWAPGADARKKGYITKQSIASLMSRTVVHRPPPITPNKASASDCPPHTSRDTKQSCKTLPPQTDPSKGHPAPRRLHLKVFMQAKVTMMGPELEIVAIYVNPDIIEISRGT 140
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A836CMW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW0_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.120e-45
Identity = 88/89 (98.88%), Postives = 89/89 (100.00%), Query Frame = 3 
Query:   42 MRLVWWVGWAAGLAGASTSGPQVMPACVAPSRELQTCGGVSEALAGVRRRDRERLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPA 308
            MRLVWWVGWAAGLAGASTSGPQVMPACVAPSRELQTCGGVSEALAGVRRRDR+RLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPA
Sbjct:    1 MRLVWWVGWAAGLAGASTSGPQVMPACVAPSRELQTCGGVSEALAGVRRRDRQRLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPA 89
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A835ZCT2_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCT2_9STRA)

HSP 1 Score: 150 bits (380), Expect = 6.950e-39
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = -3 
Query:  858 FYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS 1067
            FYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS
Sbjct:  282 FYYIPLVAVEMPCCRCVALFSLLDVACKACTPHPAPHITPNKAPASDCPPHTSRDTKQSCKTLPPQTDPS 351
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A835ZBP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP5_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.310e-22
Identity = 48/49 (97.96%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:  127 PLRENFKRVVVSRKPWLACGGGTGSGLACLESKRSRLHATAPTTSY*QR 273
            PLRENFKRVVVSRKPWLACGGGTGSGLACLESKRSRLHATAPTTSY QR
Sbjct:  180 PLRENFKRVVVSRKPWLACGGGTGSGLACLESKRSRLHATAPTTSYSQR 228
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A835ZJ73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ73_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.850e-7
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = -3 
Query:  654 MQAKVTIMGPELEIVAIYVNPDIIKISRG-SHWAPGADARKKGYITKQSIASLMS 815
            MQAKVTIMGPELEIVAI+VNPDII+ISRG S  + G   RK         AS MS
Sbjct:    1 MQAKVTIMGPELEIVAIFVNPDIIEISRGRSFGSIGEQGRKLLEAVATEYASRMS 55
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BLAST of jgi.p|Trimin1|1332 vs. uniprot
Match: A0A835Z7U0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U0_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 6.620e-6
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = -3 
Query:  399 MQAKVTMMGPELEIVAIYVNPDIIEISRG 485
            MQAKVT+MGPELEIVAIYVNPDIIEISRG
Sbjct:    1 MQAKVTIMGPELEIVAIYVNPDIIEISRG 29
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|1332 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835ZIS8_9STRA1.380e-238100.00Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
A0A835Z453_9STRA3.870e-8299.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C6W3_9STRA5.310e-8096.43Lipoxygenase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A836CMW0_9STRA2.120e-4598.88Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZCT2_9STRA6.950e-39100.00Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A835ZBP5_9STRA1.310e-2297.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZJ73_9STRA2.850e-763.64Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7U0_9STRA6.620e-696.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_1contigContig_1:1628233..1629301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|1332|CE1331_1563
Hectar predicted targeting categorysignal peptide
TranscriptId1654
TrackFilteredModels1
ProteinId1332
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|1332gene_1142Tribonema minus UTEX_B_3156 geneContig_1 1628233..1629301 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_1142_1exon_1142_1Tribonema minus UTEX_B_3156 exonContig_1 1628233..1629301 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_1142UTR5_1142Tribonema minus UTEX_B_3156 five_prime_UTRContig_1 1628233..1628273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_1142CDS_1142Tribonema minus UTEX_B_3156 CDSContig_1 1628274..1629239 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_1142UTR3_1142Tribonema minus UTEX_B_3156 three_prime_UTRContig_1 1629240..1629301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|1332Trimin1|1332|CE1331_1563Tribonema minus UTEX_B_3156 polypeptideContig_1 1628274..1629239 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_1142 ID=mRNA_1142|Name=jgi.p|Trimin1|1332|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1069bp|location=Sequence derived from alignment at Contig_1:1628233..1629301+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCTTGCCCAAGCTCGTTAACGCCGAAAGGCGTGGCAGCGAATGCGGCTG
GTTTGGTGGGTGGGCTGGGCTGCAGGGCTTGCAGGAGCTAGCACCAGCGG
CCCCCAGGTGATGCCAGCGTGCGTAGCCCCTTCGAGAGAACTTCAAACGT
GTGGTGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGAGGAGGGACAGGGAG
CGGCTTGGCGTGCTTGGAGAGCAAGCGGAGTCGGCTGCACGCCACGGCAC
CAACCACAAGTTACTAGCAGCGGTAAATGGCAATATCTTGTCAGGCTTGC
AGCCTGCGGTGAGCCGTGACCTCGCTCATCAAGGAGGCGATGCTTTACTT
AGTTATATAGCCTTTCTCTCTAGCGTCAGCGCCTGGCGCCCAGTGACTCC
CTCTGCTTATCTCTATGATATCGGGGTTCACGTAGATAGCCACAATCTCC
AGTTCAGGGCCCATCATGGTGACCTTGGCCTGCATGAAAACTTTGAGATG
GAGTCTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTCTGTCTGTGGGGGGA
GAGTCTTGCAGCTTTGTTTGGTATCCCTGCTAGTGTGTGGGGGACAGTCG
CTTGCGGATGCTTTGTTGGGGGTGATATGGGAGGCCCGGTGAACCACCGT
CCCGCTCATCAAGGAGGCGATGCTTTGCTTAGTTATATAGCCTTTCTTTC
TAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCTGCTTATCTTTATGATA
TCGGGGTTCACGTAGATAGCCACAATCTCCAGTTCAGGGCCCATTATGGT
GACCTTGGCCTGCATGAAAACTTTGAGATGGAGTCTGCGTGGAGCTGGGT
GGCCCTAAGACGGGTCTGTCTGTGGGGGGAGAGTCTTGCAGCTTTGTTTG
GTATCCCTGCTAGTATGTGGGGGACAGTCGCTTGCGGGTGCTTTGTTGGG
GGTGATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTGCATGCTACATCCA
AGAGTGAGAACAAGGCGACACACCTACAACATGGCATTTCCACAGCCACA
AGTGGAATATAATAAAAGT
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protein sequence of jgi.p|Trimin1|1332

>Trimin1|1332|CE1331_1563 ID=Trimin1|1332|CE1331_1563|Name=jgi.p|Trimin1|1332|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=322bp
MRLVWWVGWAAGLAGASTSGPQVMPACVAPSRELQTCGGVSEALAGVRRR
DRERLGVLGEQAESAARHGTNHKLLAAVNGNILSGLQPAVSRDLAHQGGD
ALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRAHHGDLGLHEN
FEMESAWSWVALRRVCLWGESLAALFGIPASVWGTVACGCFVGGDMGGPV
NHRPAHQGGDALLSYIAFLSSVSAWRPVTPSAYLYDIGVHVDSHNLQFRA
HYGDLGLHENFEMESAWSWVALRRVCLWGESLAALFGIPASMWGTVACGC
FVGGDVGGGVWRASFACYIQE*
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mRNA from alignment at Contig_1:1628233..1629301+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1142 ID=mRNA_1142|Name=jgi.p|Trimin1|1332|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1069bp|location=Sequence derived from alignment at Contig_1:1628233..1629301+ (Tribonema minus UTEX_B_3156 )
ATCTTGCCCAAGCTCGTTAACGCCGAAAGGCGTGGCAGCGAATGCGGCTG
GTTTGGTGGGTGGGCTGGGCTGCAGGGCTTGCAGGAGCTAGCACCAGCGG
CCCCCAGGTGATGCCAGCGTGCGTAGCCCCTTCGAGAGAACTTCAAACGT
GTGGTGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGAGGAGGGACAGGGAG
CGGCTTGGCGTGCTTGGAGAGCAAGCGGAGTCGGCTGCACGCCACGGCAC
CAACCACAAGTTACTAGCAGCGGTAAATGGCAATATCTTGTCAGGCTTGC
AGCCTGCGGTGAGCCGTGACCTCGCTCATCAAGGAGGCGATGCTTTACTT
AGTTATATAGCCTTTCTCTCTAGCGTCAGCGCCTGGCGCCCAGTGACTCC
CTCTGCTTATCTCTATGATATCGGGGTTCACGTAGATAGCCACAATCTCC
AGTTCAGGGCCCATCATGGTGACCTTGGCCTGCATGAAAACTTTGAGATG
GAGTCTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTCTGTCTGTGGGGGGA
GAGTCTTGCAGCTTTGTTTGGTATCCCTGCTAGTGTGTGGGGGACAGTCG
CTTGCGGATGCTTTGTTGGGGGTGATATGGGAGGCCCGGTGAACCACCGT
CCCGCTCATCAAGGAGGCGATGCTTTGCTTAGTTATATAGCCTTTCTTTC
TAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCTGCTTATCTTTATGATA
TCGGGGTTCACGTAGATAGCCACAATCTCCAGTTCAGGGCCCATTATGGT
GACCTTGGCCTGCATGAAAACTTTGAGATGGAGTCTGCGTGGAGCTGGGT
GGCCCTAAGACGGGTCTGTCTGTGGGGGGAGAGTCTTGCAGCTTTGTTTG
GTATCCCTGCTAGTATGTGGGGGACAGTCGCTTGCGGGTGCTTTGTTGGG
GGTGATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTGCATGCTACATCCA
AGAGTGAGAACAAGGCGACACACCTACAACATGGCATTTCCACAGCCACA
AGTGGAATATAATAAAAGT
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Coding sequence (CDS) from alignment at Contig_1:1628233..1629301+

>mRNA_1142 ID=mRNA_1142|Name=jgi.p|Trimin1|1332|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=966bp|location=Sequence derived from alignment at Contig_1:1628233..1629301+ (Tribonema minus UTEX_B_3156 )
ATGCGGCTGGTTTGGTGGGTGGGCTGGGCTGCAGGGCTTGCAGGAGCTAG
CACCAGCGGCCCCCAGGTGATGCCAGCGTGCGTAGCCCCTTCGAGAGAAC
TTCAAACGTGTGGTGGTGTCTCGGAAGCCCTGGCTGGCGTGCGGAGGAGG
GACAGGGAGCGGCTTGGCGTGCTTGGAGAGCAAGCGGAGTCGGCTGCACG
CCACGGCACCAACCACAAGTTACTAGCAGCGGTAAATGGCAATATCTTGT
CAGGCTTGCAGCCTGCGGTGAGCCGTGACCTCGCTCATCAAGGAGGCGAT
GCTTTACTTAGTTATATAGCCTTTCTCTCTAGCGTCAGCGCCTGGCGCCC
AGTGACTCCCTCTGCTTATCTCTATGATATCGGGGTTCACGTAGATAGCC
ACAATCTCCAGTTCAGGGCCCATCATGGTGACCTTGGCCTGCATGAAAAC
TTTGAGATGGAGTCTGCGTGGAGCTGGGTGGCCCTTAGAAGGGTCTGTCT
GTGGGGGGAGAGTCTTGCAGCTTTGTTTGGTATCCCTGCTAGTGTGTGGG
GGACAGTCGCTTGCGGATGCTTTGTTGGGGGTGATATGGGAGGCCCGGTG
AACCACCGTCCCGCTCATCAAGGAGGCGATGCTTTGCTTAGTTATATAGC
CTTTCTTTCTAGCGTCAGCGCCTGGCGCCCAGTGACTCCCTCTGCTTATC
TTTATGATATCGGGGTTCACGTAGATAGCCACAATCTCCAGTTCAGGGCC
CATTATGGTGACCTTGGCCTGCATGAAAACTTTGAGATGGAGTCTGCGTG
GAGCTGGGTGGCCCTAAGACGGGTCTGTCTGTGGGGGGAGAGTCTTGCAG
CTTTGTTTGGTATCCCTGCTAGTATGTGGGGGACAGTCGCTTGCGGGTGC
TTTGTTGGGGGTGATGTGGGGGGCGGGGTGTGGCGTGCAAGCTTTGCATG
CTACATCCAAGAGTGA
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