mRNA_7214 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|41998
Unique NamemRNA_7214
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A835Z1E9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1E9_9STRA)

HSP 1 Score: 127 bits (318), Expect = 1.210e-36
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 3 
Query:   33 MTEPVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAANRPPEPQSEEDHDGDS 230
            MTEPVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAANRPPEPQSEEDHDGDS
Sbjct:    1 MTEPVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAANRPPEPQSEEDHDGDS 66
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: R1EVH0_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EVH0_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 3.570e-12
Identity = 32/48 (66.67%), Postives = 41/48 (85.42%), Query Frame = 3 
Query:   39 EPVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAA 182
            +P L+EV+ K GLVFSEK SL  VLCKPKL+PIKS++LEK+E +E+AA
Sbjct:    5 QPTLQEVLPKAGLVFSEKGSLAPVLCKPKLMPIKSLSLEKIEQMESAA 52
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A8J6C882_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6C882_DIALT)

HSP 1 Score: 64.3 bits (155), Expect = 8.290e-12
Identity = 30/45 (66.67%), Postives = 39/45 (86.67%), Query Frame = 3 
Query:   42 PVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEA 176
            PV++EV+ K GLV+SEK +L EVLCKPK++PIKSV LEK+E +EA
Sbjct:    6 PVIQEVLPKAGLVYSEKGNLSEVLCKPKIMPIKSVTLEKIEQMEA 50
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A0M0LPT4_9EUKA (Bbsome-interacting protein 1-like protein n=2 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LPT4_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 1.240e-11
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 3 
Query:   24 LQGMTE--PVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAA 182
            + G T+  P L EV+ K GLV+SEK +L EVLCKPK++PIKSV+LE+LEA+E  A
Sbjct:    1 MSGATDDRPTLLEVLPKAGLVYSEKGNLSEVLCKPKIMPIKSVSLERLEAMEQQA 55
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A7S1L5B1_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1L5B1_NEODS)

HSP 1 Score: 61.6 bits (148), Expect = 3.580e-10
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 3 
Query:   42 PVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAA 182
            PV+ EV+ K GLV+SEK S+ E+ CKPK++PIKS ALE+LEA+E  A
Sbjct:   28 PVITEVLPKSGLVYSEKSSMTELHCKPKIMPIKSAALERLEAMETEA 74
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A7J7PN90_9CHLO (BBSome-interacting protein 1 n=2 Tax=Scenedesmaceae TaxID=3086 RepID=A0A7J7PN90_9CHLO)

HSP 1 Score: 60.1 bits (144), Expect = 4.940e-10
Identity = 29/45 (64.44%), Postives = 36/45 (80.00%), Query Frame = 3 
Query:   42 PVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEA 176
            P L+EV+ K GLV SEK  L E+LCKPKLLP+KS+ L+KLE +EA
Sbjct:    8 PSLQEVLPKSGLVVSEKGGLSELLCKPKLLPLKSITLQKLEEMEA 52
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: J9HZC4_9SPIT (Uncharacterized protein n=1 Tax=Oxytricha trifallax TaxID=1172189 RepID=J9HZC4_9SPIT)

HSP 1 Score: 58.9 bits (141), Expect = 1.050e-9
Identity = 26/42 (61.90%), Postives = 36/42 (85.71%), Query Frame = 3 
Query:   48 LKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALE 173
            +KE++ K GLV+SEK +L E+LCKPK+LP+KSV L+KLE +E
Sbjct:   15 IKEIMPKAGLVYSEKAALSEILCKPKILPLKSVTLQKLEQME 56
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A7S1CLD0_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CLD0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.220e-9
Identity = 28/49 (57.14%), Postives = 39/49 (79.59%), Query Frame = 3 
Query:   36 TEPVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAA 182
            ++ V+ EV+ K GLV+SEK +L E+LCKPK++PIKS+ LEKLE +E  A
Sbjct:    1 SDVVIAEVLPKAGLVYSEKGNLSEILCKPKIMPIKSLTLEKLEQMEQEA 49
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A6H5KLR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR6_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 2.500e-9
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 3 
Query:   48 LKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEA 176
            L E++ K GLV+SEK +L EVLCKPKL+PIKS+ L+KLE  EA
Sbjct:   17 LAELLPKNGLVYSEKTTLSEVLCKPKLMPIKSITLQKLEQQEA 59
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BLAST of jgi.p|Trimin1|41998 vs. uniprot
Match: A0A830H8T7_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H8T7_9CHLO)

HSP 1 Score: 57.8 bits (138), Expect = 3.060e-9
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 3 
Query:   48 LKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALE-------AAANRP 191
            L E++ K GLV+SEK +L EVLCKPK++P+KSV LE+LE +E       AAA++P
Sbjct:   11 LHEILPKAGLVYSEKGNLSEVLCKPKIMPLKSVTLERLEEMEKRMQEVLAAADQP 65
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|41998 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1E9_9STRA1.210e-36100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
R1EVH0_EMIHU3.570e-1266.67Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A8J6C882_DIALT8.290e-1266.67Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0M0LPT4_9EUKA1.240e-1160.00Bbsome-interacting protein 1-like protein n=2 Tax=... [more]
A0A7S1L5B1_NEODS3.580e-1061.70Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A7J7PN90_9CHLO4.940e-1064.44BBSome-interacting protein 1 n=2 Tax=Scenedesmacea... [more]
J9HZC4_9SPIT1.050e-961.90Uncharacterized protein n=1 Tax=Oxytricha trifalla... [more]
A0A7S1CLD0_9STRA1.220e-957.14Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A6H5KLR6_9PHAE2.500e-965.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A830H8T7_9CHLO3.060e-954.55Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_21contigContig_21:989637..989915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|41998|CE41997_6
BRITEko00000,ko03036
KEGG koko:K19399
GOsGO:0005575,GO:0005623,GO:0005929,GO:0006996,GO:0008104,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032991,GO:0033036,GO:0033365,GO:0034464,GO:0034613,GO:0042995,GO:0043226,GO:0044085,GO:0044422,GO:0044441,GO:0044463,GO:0044464,GO:0044782,GO:0051179,GO:0051641,GO:0060271,GO:0061512,GO:0070727,GO:0070925,GO:0071840,GO:0072657,GO:0097499,GO:0097500,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903441,GO:1990778
Descriptionreceptor localization to non-motile cilium
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs2D0C2@1|root,2SDMB@2759|Eukaryota
Evalue2.87e-09
Seed ortholog112098.XP_008611155.1
Hectar predicted targeting categoryother localisation
TranscriptId42320
TrackFilteredModels1
ProteinId41998
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|41998gene_7214Tribonema minus UTEX_B_3156 geneContig_21 989637..989915 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7214_1exon_7214_1Tribonema minus UTEX_B_3156 exonContig_21 989637..989915 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7214UTR3_7214Tribonema minus UTEX_B_3156 three_prime_UTRContig_21 989637..989682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7214CDS_7214Tribonema minus UTEX_B_3156 CDSContig_21 989683..989883 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7214UTR5_7214Tribonema minus UTEX_B_3156 five_prime_UTRContig_21 989884..989915 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|41998Trimin1|41998|CE41997_6Tribonema minus UTEX_B_3156 polypeptideContig_21 989683..989883 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7214 ID=mRNA_7214|Name=jgi.p|Trimin1|41998|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_21:989637..989915- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAGGAGCGGCGGGCTTTGACACCTGCAGGGCATGACAGAGCCAGTGCTG
AAGGAGGTGATCGCCAAGAAGGGCCTGGTGTTCAGCGAGAAGCCGTCACT
GCACGAGGTGCTTTGCAAACCTAAGCTTTTGCCAATCAAAAGTGTGGCGC
TGGAGAAGCTGGAAGCTCTGGAGGCGGCGGCAAACAGACCGCCAGAACCA
CAATCCGAGGAAGATCACGATGGTGACTCATGACAAAGTGAGAAAAGTTC
TTCACACTCCAATAATACCGAAGTATTTA
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protein sequence of jgi.p|Trimin1|41998

>Trimin1|41998|CE41997_6 ID=Trimin1|41998|CE41997_6|Name=jgi.p|Trimin1|41998|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=67bp
MTEPVLKEVIAKKGLVFSEKPSLHEVLCKPKLLPIKSVALEKLEALEAAA
NRPPEPQSEEDHDGDS*
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mRNA from alignment at Contig_21:989637..989915-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7214 ID=mRNA_7214|Name=jgi.p|Trimin1|41998|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=279bp|location=Sequence derived from alignment at Contig_21:989637..989915- (Tribonema minus UTEX_B_3156 )
GAAGGAGCGGCGGGCTTTGACACCTGCAGGGCATGACAGAGCCAGTGCTG
AAGGAGGTGATCGCCAAGAAGGGCCTGGTGTTCAGCGAGAAGCCGTCACT
GCACGAGGTGCTTTGCAAACCTAAGCTTTTGCCAATCAAAAGTGTGGCGC
TGGAGAAGCTGGAAGCTCTGGAGGCGGCGGCAAACAGACCGCCAGAACCA
CAATCCGAGGAAGATCACGATGGTGACTCATGACAAAGTGAGAAAAGTTC
TTCACACTCCAATAATACCGAAGTATTTA
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Coding sequence (CDS) from alignment at Contig_21:989637..989915-

>mRNA_7214 ID=mRNA_7214|Name=jgi.p|Trimin1|41998|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=201bp|location=Sequence derived from alignment at Contig_21:989637..989915- (Tribonema minus UTEX_B_3156 )
ATGACAGAGCCAGTGCTGAAGGAGGTGATCGCCAAGAAGGGCCTGGTGTT
CAGCGAGAAGCCGTCACTGCACGAGGTGCTTTGCAAACCTAAGCTTTTGC
CAATCAAAAGTGTGGCGCTGGAGAAGCTGGAAGCTCTGGAGGCGGCGGCA
AACAGACCGCCAGAACCACAATCCGAGGAAGATCACGATGGTGACTCATG
A
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