mRNA_17097 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354103
Unique NamemRNA_17097
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354103 vs. uniprot
Match: A0A835Z2B1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2B1_9STRA)

HSP 1 Score: 311 bits (796), Expect = 3.810e-105
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 1 
Query:    1 MVFFVRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGVGLI 549
            MVFFVRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGVGLI
Sbjct:    1 MVFFVRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQNGVGLI 183
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BLAST of jgi.p|Trimin1|354103 vs. uniprot
Match: A0A6H5LAT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAT6_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 1.770e-35
Identity = 82/174 (47.13%), Postives = 103/174 (59.20%), Query Frame = 1 
Query:   13 VRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQN 534
            + +G   +V+ QAL  PWK C GVEIVP+LHD+  AAL EA R                        LR++APC+L LGD+          D +   DV+FCY S++PA GDLLT  S+ L   LR GA V+TTDRRL S+ G WEFAL   REG N+ETGG S+AYIWEV ++
Sbjct:  143 IGSGCGRLVVAQALTWPWKSCRGVEIVPSLHDMGQAALQEADRLAKGEENALSPETSRL--------LRSMAPCSLSLGDV------NDDVDIS-DIDVLFCYSSSFPAFGDLLTEFSYTLGHKLRPGAQVITTDRRLVSD-GPWEFALLGEREGRNSETGGKSIAYIWEVVRS 300
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BLAST of jgi.p|Trimin1|354103 vs. uniprot
Match: D7G834_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G834_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 2.730e-20
Identity = 47/77 (61.04%), Postives = 58/77 (75.32%), Query Frame = 1 
Query:  304 DVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWEFALRATREGVNAETGGASVAYIWEVTQN 534
            DV+FCY S++PA GDLLT  S+ L   L+ GA V+TTDRRL S+ G WEFAL   REG N+ETGG S+AYIWEV ++
Sbjct:   10 DVLFCYSSSFPAFGDLLTEFSYTLGHKLQPGAQVITTDRRLVSD-GPWEFALLGEREGRNSETGGKSIAYIWEVVRS 85
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BLAST of jgi.p|Trimin1|354103 vs. uniprot
Match: A0A7S0Q107_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q107_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 5.690e-17
Identity = 63/176 (35.80%), Postives = 81/176 (46.02%), Query Frame = 1 
Query:   13 VRNGAFGIVIGQALRHP-WKECAGVEIVPALHDIAAAALAEAQRAXXXXXXXXXXXXXXXXXXXXXXALRALAPCALHLGDILTPCRGTPPTDAAARADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLAS-EPGAWEFALRATREGVNAETGGASVAYIWEVTQN 534
            V +G   +V   A+  P    C GVE V  LHD+A  A + +                               PC    GD      GTPP  + A  D +F Y S +P+AGD LT  S A + +L  G  ++TTD+RL S E G WEF L    +G NAETGG S  YIWEV ++
Sbjct:   13 VGSGCGRLVFAAAVLQPSLSRCVGVEKVAGLHDLACEAASTSPLPAGSP------------------------PCEFLCGDAFE-FLGTPPPYSLAAPDCIFIYSSAFPSAGDTLTDASLAFS-MLPAGTRIITTDKRLGSDEAGRWEFQLLKELDGPNAETGGTSTGYIWEVRRD 162
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354103 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835Z2B1_9STRA3.810e-105100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5LAT6_9PHAE1.770e-3547.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G834_ECTSI2.730e-2061.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0Q107_9EUKA5.690e-1735.80Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_209contigContig_209:41594..42823 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354103|estExt_Genemark1.C_Ctg_2090010
Max annot lvl2759|Eukaryota
EggNOG OGs2D163@1|root,2SGUP@2759|Eukaryota
Evalue8.27e-22
Seed ortholog2880.D7G834
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010610.1
TranscriptId354425
TrackFilteredModels1
ProteinId354103
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354103gene_17097Tribonema minus UTEX_B_3156 geneContig_209 41594..42823 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17097_1exon_17097_1Tribonema minus UTEX_B_3156 exonContig_209 41594..41629 +
exon_17097_2exon_17097_2Tribonema minus UTEX_B_3156 exonContig_209 42109..42823 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17097CDS_17097Tribonema minus UTEX_B_3156 CDSContig_209 41594..41629 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17097UTR3_17097Tribonema minus UTEX_B_3156 three_prime_UTRContig_209 42625..42823 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354103Trimin1|354103|estExt_Genemark1.C_Ctg_2090010Tribonema minus UTEX_B_3156 polypeptideContig_209 41594..42624 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17097 ID=mRNA_17097|Name=jgi.p|Trimin1|354103|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=751bp|location=Sequence derived from alignment at Contig_209:41594..42823+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGTCTTCTTTGTGCGGAACGGGGCATTCGGCATCGTCATCGGCCAGGC
GCTGCGCCACCCGTGGAAGGAGTGCGCGGGCGTCGAGATCGTGCCCGCGC
TTCACGACATCGCCGCCGCGGCGCTCGCGGAAGCGCAGCGCGCCGCCGCC
GCCGCCGCCTCGGCGCCTCACAGCGCCGCCGCCGCCGCGTTCACGCCTCA
GCAGGCGGCGGCGCTGCGCGCGCTGGCGCCGTGCGCGCTGCACCTCGGCG
ACATTTTAACCCCCTGTAGGGGGACGCCGCCGACGGACGCCGCCGCGCGC
GCGGACGTCGTCTTCTGCTACTGCAGCACGTGGCCCGCCGCGGGCGACCT
GCTCACGGGGCTGTCGTTCGCGCTGGCGGCAGTGCTCAGGAAGGGGGCGC
TCGTGGTGACGACGGACCGGCGCCTCGCGAGCGAGCCGGGGGCGTGGGAG
TTTGCACTGCGCGCTACGCGTGAGGGGGTGAACGCGGAGACGGGGGGGGC
GAGCGTTGCGTACATCTGGGAGGTTACGCAGAACGGCGTGGGGCTGATTT
GATGTAGCTGCGCAGATGTGTGGTACCGTCATGCTGGACGGACGGTGCGG
GTCTGTCTGGTGGTGCTGCGAGCACATTGTTTCTGTGCGCGACGCTTTAC
AGTCCTTTCTAACAGCATTTACTTATTTATACTGAGGAAATGACATTTTA
CAGCATTTCATGTTTCAAACGCTTTCAGTTTCACAACAAATAAAAGCTCA
C
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protein sequence of jgi.p|Trimin1|354103

>Trimin1|354103|estExt_Genemark1.C_Ctg_2090010 ID=Trimin1|354103|estExt_Genemark1.C_Ctg_2090010|Name=jgi.p|Trimin1|354103|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=184bp
MVFFVRNGAFGIVIGQALRHPWKECAGVEIVPALHDIAAAALAEAQRAAA
AAASAPHSAAAAAFTPQQAAALRALAPCALHLGDILTPCRGTPPTDAAAR
ADVVFCYCSTWPAAGDLLTGLSFALAAVLRKGALVVTTDRRLASEPGAWE
FALRATREGVNAETGGASVAYIWEVTQNGVGLI*
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mRNA from alignment at Contig_209:41594..42823+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17097 ID=mRNA_17097|Name=jgi.p|Trimin1|354103|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1230bp|location=Sequence derived from alignment at Contig_209:41594..42823+ (Tribonema minus UTEX_B_3156 )
ATGGTCTTCTTTGTGCGGAACGGGGCATTCGGCATCGTATGGCTTTTAAT
GAGGCGAGCGCTCGAGCGCTGATGGCGCCTGGACAGAGTGCATGAATTCC
ATGTGTGAACTGCAAACGTGCACTCCCTGGGATCATGGCCTCTGCATGTT
TGATGATCGCTCAATGGAGAACAACGGCAGTGAGCATTGTGACAGCACAC
AAACATCGACGAGGTCATTCGGCGGTCCAGCCAGTAGCAGTCTGACCGCC
CGGACCTTATGTTCAAGAGAATCTCTCACTGCGCATGGGCCGCCACTCAT
CGAGCATCCATTCAAAATACACCTGTGTCGGAAGCTGCAAACACGACTTC
TGGTGACCGTGCGCACGCCACCACCGCCGCGCGCCCTGCGCACGATGCGG
CCCTGAAGCCTGCACGACCATCACTGCGCTCACTCTGCTGAAGGTGCCCT
GCGCAAAACGCGGCTCTGAAAGTCTGCATCATCACCGCTGCGTTCGCTCC
GGTCTCCTGCCGAAGGTCATCGGCCAGGCGCTGCGCCACCCGTGGAAGGA
GTGCGCGGGCGTCGAGATCGTGCCCGCGCTTCACGACATCGCCGCCGCGG
CGCTCGCGGAAGCGCAGCGCGCCGCCGCCGCCGCCGCCTCGGCGCCTCAC
AGCGCCGCCGCCGCCGCGTTCACGCCTCAGCAGGCGGCGGCGCTGCGCGC
GCTGGCGCCGTGCGCGCTGCACCTCGGCGACATTTTAACCCCCTGTAGGG
GGACGCCGCCGACGGACGCCGCCGCGCGCGCGGACGTCGTCTTCTGCTAC
TGCAGCACGTGGCCCGCCGCGGGCGACCTGCTCACGGGGCTGTCGTTCGC
GCTGGCGGCAGTGCTCAGGAAGGGGGCGCTCGTGGTGACGACGGACCGGC
GCCTCGCGAGCGAGCCGGGGGCGTGGGAGTTTGCACTGCGCGCTACGCGT
GAGGGGGTGAACGCGGAGACGGGGGGGGCGAGCGTTGCGTACATCTGGGA
GGTTACGCAGAACGGCGTGGGGCTGATTTGATGTAGCTGCGCAGATGTGT
GGTACCGTCATGCTGGACGGACGGTGCGGGTCTGTCTGGTGGTGCTGCGA
GCACATTGTTTCTGTGCGCGACGCTTTACAGTCCTTTCTAACAGCATTTA
CTTATTTATACTGAGGAAATGACATTTTACAGCATTTCATGTTTCAAACG
CTTTCAGTTTCACAACAAATAAAAGCTCAC
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Coding sequence (CDS) from alignment at Contig_209:41594..42823+

>mRNA_17097 ID=mRNA_17097|Name=jgi.p|Trimin1|354103|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=552bp|location=Sequence derived from alignment at Contig_209:41594..42823+ (Tribonema minus UTEX_B_3156 )
ATGGTCTTCTTTGTGCGGAACGGGGCATTCGGCATCGTCATCGGCCAGGC
GCTGCGCCACCCGTGGAAGGAGTGCGCGGGCGTCGAGATCGTGCCCGCGC
TTCACGACATCGCCGCCGCGGCGCTCGCGGAAGCGCAGCGCGCCGCCGCC
GCCGCCGCCTCGGCGCCTCACAGCGCCGCCGCCGCCGCGTTCACGCCTCA
GCAGGCGGCGGCGCTGCGCGCGCTGGCGCCGTGCGCGCTGCACCTCGGCG
ACATTTTAACCCCCTGTAGGGGGACGCCGCCGACGGACGCCGCCGCGCGC
GCGGACGTCGTCTTCTGCTACTGCAGCACGTGGCCCGCCGCGGGCGACCT
GCTCACGGGGCTGTCGTTCGCGCTGGCGGCAGTGCTCAGGAAGGGGGCGC
TCGTGGTGACGACGGACCGGCGCCTCGCGAGCGAGCCGGGGGCGTGGGAG
TTTGCACTGCGCGCTACGCGTGAGGGGGTGAACGCGGAGACGGGGGGGGC
GAGCGTTGCGTACATCTGGGAGGTTACGCAGAACGGCGTGGGGCTGATTT
GA
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