mRNA_17095 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354101
Unique NamemRNA_17095
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|354101 vs. uniprot
Match: A0A835Z3G6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3G6_9STRA)

HSP 1 Score: 443 bits (1140), Expect = 2.410e-154
Identity = 286/286 (100.00%), Postives = 286/286 (100.00%), Query Frame = 1 
Query:  145 MQSIEDARATGVADLPMNPAAQQTTSLLRELDDAEDKVARMLELAAEVTDQLAAFDSVDASAVQATSRAFLQLAGEVHSCLATKAHMIRDYRHYERSGYGARQGEALLRGKAALLREELRRLQGXXXXXXXXXXXXXXXXXXRHRSSLDDMQESDVTPGHDRQPSARDAVSGQGLLPVRQSSLDQQLLMADETGGMPTVKKSSIDXQLHAAAGXXXXXXXXXXXXXXXXXXAAEERLQMNVLSADIAAQLGQVGAAAADAAAPPAAEPGAGDEPAVEDVNMDVQQA 1002
            MQSIEDARATGVADLPMNPAAQQTTSLLRELDDAEDKVARMLELAAEVTDQLAAFDSVDASAVQATSRAFLQLAGEVHSCLATKAHMIRDYRHYERSGYGARQGEALLRGKAALLREELRRLQGXXXXXXXXXXXXXXXXXXRHRSSLDDMQESDVTPGHDRQPSARDAVSGQGLLPVRQSSLDQQLLMADETGGMPTVKKSSIDXQLHAAAGXXXXXXXXXXXXXXXXXXAAEERLQMNVLSADIAAQLGQVGAAAADAAAPPAAEPGAGDEPAVEDVNMDVQQA
Sbjct:    1 MQSIEDARATGVADLPMNPAAQQTTSLLRELDDAEDKVARMLELAAEVTDQLAAFDSVDASAVQATSRAFLQLAGEVHSCLATKAHMIRDYRHYERSGYGARQGEALLRGKAALLREELRRLQGXXXXXXXXXXXXXXXXXXRHRSSLDDMQESDVTPGHDRQPSARDAVSGQGLLPVRQSSLDQQLLMADETGGMPTVKKSSIDXQLHAAAGXXXXXXXXXXXXXXXXXXAAEERLQMNVLSADIAAQLGQVGAAAADAAAPPAAEPGAGDEPAVEDVNMDVQQA 286
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354101 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z3G6_9STRA2.410e-154100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_209contigContig_209:37494..38946 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354101|estExt_Genemark1.C_Ctg_2090008
Descriptionfunction. Source PGD
COG categoryS
Max annot lvl121069|Pythiales
EggNOG OGs2E1P9@1|root,2S8ZH@2759|Eukaryota,1MGVH@121069|Pythiales
Evalue4.8e-08
Seed ortholog65071.PYU1_T012062
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003640.1
TranscriptId354423
TrackFilteredModels1
ProteinId354101
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354101gene_17095Tribonema minus UTEX_B_3156 geneContig_209 37494..38946 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17095_1exon_17095_1Tribonema minus UTEX_B_3156 exonContig_209 37494..37853 +
exon_17095_2exon_17095_2Tribonema minus UTEX_B_3156 exonContig_209 38273..38946 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_17095UTR5_17095Tribonema minus UTEX_B_3156 five_prime_UTRContig_209 37494..37637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17095CDS_17095Tribonema minus UTEX_B_3156 CDSContig_209 37638..37853 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_17095UTR3_17095Tribonema minus UTEX_B_3156 three_prime_UTRContig_209 38918..38946 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354101Trimin1|354101|estExt_Genemark1.C_Ctg_2090008Tribonema minus UTEX_B_3156 polypeptideContig_209 37638..38917 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17095 ID=mRNA_17095|Name=jgi.p|Trimin1|354101|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1034bp|location=Sequence derived from alignment at Contig_209:37494..38946+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGGTGTGAATTAGGAGCTTCTGGTAGCAAGTCAGGCGCAGCGATTTCG
TCACGTACGATGTGTTTGCGCAGGTAGCGGCGAAGGGATCTTCAAAAGCA
ATTTTGGGGTGTCGCTAGCTGGGTCTGGTTGATCCCAGACAACCATGCAG
AGCATAGAGGATGCCCGCGCCACTGGAGTGGCAGACCTGCCAATGAACCC
TGCTGCGCAGCAGACCACGAGTCTGCTGAGGGAGCTGGACGATGCTGAGG
ATAAGGTTGCACGCATGTTGGAGCTGGCCGCTGAAGTCACAGATCAGCTC
GCTGCTTTTGACTCCGTGGATGCCTCTGCGGTGCAAGCCACGAGTCGTGC
GTTCCTACAGCTAGCCGGCGAGGTGCACTCGTGCCTCGCGACGAAGGCGC
ACATGATCAGGGACTACCGCCACTACGAGCGCAGCGGCTACGGCGCGCGG
CAGGGCGAGGCGCTGCTGCGCGGCAAGGCGGCGCTGCTGCGGGAGGAGCT
GCGCAGGCTGCAGGGGGGAGGGTCCCCCAACGCTGGGGCAGCAGCTCTGG
CGGCAGCAGCGGCGCCGCCGCGCCACCGCAGCAGCCTGGACGACATGCAG
GAGAGCGACGTTACGCCAGGGCACGATCGCCAGCCGAGCGCACGAGACGC
GGTGTCAGGTCAAGGGTTGCTGCCGGTGCGGCAGAGCAGCCTGGACCAGC
AGCTGCTCATGGCGGACGAAACCGGCGGCATGCCCACGGTGAAGAAGAGC
AGCATCGATCAGCAGCTGCACGCCGCAGCGGGGGGCTCCACCTCAGAGCC
GCAGCCCGCAGGCGGCGGCGGCGGGGGCGGTCCGAGCGCCGCGGAGGAAA
GGCTGCAAATGAACGTGCTGAGCGCTGATATTGCAGCGCAACTGGGGCAA
GTAGGTGCGGCTGCAGCGGACGCTGCAGCGCCGCCAGCAGCCGAACCCGG
TGCCGGCGACGAGCCCGCAGTTGAAGATGTAAATATGGATGTACAGCAGG
CATGACGAAAATCAAAAGATATGGTATACCGATG
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protein sequence of jgi.p|Trimin1|354101

>Trimin1|354101|estExt_Genemark1.C_Ctg_2090008 ID=Trimin1|354101|estExt_Genemark1.C_Ctg_2090008|Name=jgi.p|Trimin1|354101|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=287bp
MQSIEDARATGVADLPMNPAAQQTTSLLRELDDAEDKVARMLELAAEVTD
QLAAFDSVDASAVQATSRAFLQLAGEVHSCLATKAHMIRDYRHYERSGYG
ARQGEALLRGKAALLREELRRLQGGGSPNAGAAALAAAAAPPRHRSSLDD
MQESDVTPGHDRQPSARDAVSGQGLLPVRQSSLDQQLLMADETGGMPTVK
KSSIDQQLHAAAGGSTSEPQPAGGGGGGGPSAAEERLQMNVLSADIAAQL
GQVGAAAADAAAPPAAEPGAGDEPAVEDVNMDVQQA*
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mRNA from alignment at Contig_209:37494..38946+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17095 ID=mRNA_17095|Name=jgi.p|Trimin1|354101|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1453bp|location=Sequence derived from alignment at Contig_209:37494..38946+ (Tribonema minus UTEX_B_3156 )
GCGGGTGTGAATTAGGAGCTTCTGGTAGCAAGTCAGGCGCAGCGATTTCG
TCACGTACGATGTGTTTGCGCAGGTAGCGGCGAAGGGATCTTCAAAAGCA
ATTTTGGGGTGTCGCTAGCTGGGTCTGGTTGATCCCAGACAACCATGCAG
AGCATAGAGGATGCCCGCGCCACTGGAGTGGCAGACCTGCCAATGAACCC
TGCTGCGCAGCAGACCACGAGTCTGCTGAGGGAGCTGGACGATGCTGAGG
ATAAGGTTGCACGCATGTTGGAGCTGGCCGCTGAAGTCACAGATCAGCTC
GCTGCTTTTGACTCCGTGGATGCCTCTGCGGTGCAAGCCACGAGTCGTGC
GTTCCTACAGGTGAGCTGCTTGAAAAGGGACTCTGTTAGGGCGCCAGCTT
GGCCAAGGATCCGGCCCTTTGTTCCTGGCACAAAACTTGACTGATCGATC
TTTCAGTCGGCTCTGCAGCACTCAGAGCTTGATGGTTGCTGCACACTTTA
AATCCTTCTTTGAGCCTCTTTGTAGGAACCTGTTGCCGGCGCTCACGCAC
GTCTTTTGCAGACGAGGTGTAAGGCTAACCTGAACTGGCACTTGACACAG
CCTTCAAGCAAGGTGCAGCATTGTGCTGCACGCTGCCATCATCCGGACAG
TTGCATGTGTGCGCCACTGCCCGCTCAGCATCGTTCGCCGCAACCGTCAG
CAGCAGGCATGCCACCGCACAGGCAACAGCACTCCCCTTCAACCCACCCT
TCATCGATCCCGTGCGTGTGTGAACGCAGCTAGCCGGCGAGGTGCACTCG
TGCCTCGCGACGAAGGCGCACATGATCAGGGACTACCGCCACTACGAGCG
CAGCGGCTACGGCGCGCGGCAGGGCGAGGCGCTGCTGCGCGGCAAGGCGG
CGCTGCTGCGGGAGGAGCTGCGCAGGCTGCAGGGGGGAGGGTCCCCCAAC
GCTGGGGCAGCAGCTCTGGCGGCAGCAGCGGCGCCGCCGCGCCACCGCAG
CAGCCTGGACGACATGCAGGAGAGCGACGTTACGCCAGGGCACGATCGCC
AGCCGAGCGCACGAGACGCGGTGTCAGGTCAAGGGTTGCTGCCGGTGCGG
CAGAGCAGCCTGGACCAGCAGCTGCTCATGGCGGACGAAACCGGCGGCAT
GCCCACGGTGAAGAAGAGCAGCATCGATCAGCAGCTGCACGCCGCAGCGG
GGGGCTCCACCTCAGAGCCGCAGCCCGCAGGCGGCGGCGGCGGGGGCGGT
CCGAGCGCCGCGGAGGAAAGGCTGCAAATGAACGTGCTGAGCGCTGATAT
TGCAGCGCAACTGGGGCAAGTAGGTGCGGCTGCAGCGGACGCTGCAGCGC
CGCCAGCAGCCGAACCCGGTGCCGGCGACGAGCCCGCAGTTGAAGATGTA
AATATGGATGTACAGCAGGCATGACGAAAATCAAAAGATATGGTATACCG
ATG
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Coding sequence (CDS) from alignment at Contig_209:37494..38946+

>mRNA_17095 ID=mRNA_17095|Name=jgi.p|Trimin1|354101|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=861bp|location=Sequence derived from alignment at Contig_209:37494..38946+ (Tribonema minus UTEX_B_3156 )
ATGCAGAGCATAGAGGATGCCCGCGCCACTGGAGTGGCAGACCTGCCAAT
GAACCCTGCTGCGCAGCAGACCACGAGTCTGCTGAGGGAGCTGGACGATG
CTGAGGATAAGGTTGCACGCATGTTGGAGCTGGCCGCTGAAGTCACAGAT
CAGCTCGCTGCTTTTGACTCCGTGGATGCCTCTGCGGTGCAAGCCACGAG
TCGTGCGTTCCTACAGCTAGCCGGCGAGGTGCACTCGTGCCTCGCGACGA
AGGCGCACATGATCAGGGACTACCGCCACTACGAGCGCAGCGGCTACGGC
GCGCGGCAGGGCGAGGCGCTGCTGCGCGGCAAGGCGGCGCTGCTGCGGGA
GGAGCTGCGCAGGCTGCAGGGGGGAGGGTCCCCCAACGCTGGGGCAGCAG
CTCTGGCGGCAGCAGCGGCGCCGCCGCGCCACCGCAGCAGCCTGGACGAC
ATGCAGGAGAGCGACGTTACGCCAGGGCACGATCGCCAGCCGAGCGCACG
AGACGCGGTGTCAGGTCAAGGGTTGCTGCCGGTGCGGCAGAGCAGCCTGG
ACCAGCAGCTGCTCATGGCGGACGAAACCGGCGGCATGCCCACGGTGAAG
AAGAGCAGCATCGATCAGCAGCTGCACGCCGCAGCGGGGGGCTCCACCTC
AGAGCCGCAGCCCGCAGGCGGCGGCGGCGGGGGCGGTCCGAGCGCCGCGG
AGGAAAGGCTGCAAATGAACGTGCTGAGCGCTGATATTGCAGCGCAACTG
GGGCAAGTAGGTGCGGCTGCAGCGGACGCTGCAGCGCCGCCAGCAGCCGA
ACCCGGTGCCGGCGACGAGCCCGCAGTTGAAGATGTAAATATGGATGTAC
AGCAGGCATGA
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