mRNA_17112 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|41331
Unique Name	mRNA_17112
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|41331 vs. uniprot
Match: A0A835Z2C2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2C2_9STRA)

HSP 1 Score: 338 bits (868), Expect = 1.060e-113
Identity = 220/220 (100.00%), Postives = 220/220 (100.00%), Query Frame = 1

Query:    1 ARAKQAERRAVLRGTVDGNAAAAAVQSARTGASALRVTADVEAVEDSVGEIASCGASIVVADTAEDLVQELHTDQSARREVSALRAEADVVMVARSGASGEMAVDDSVGGIASCEASIVVAATADQSARREVSXXXXXXXXXXXXXXXXXXAASGVSTLVEGIYGILPDDVLVSQAEQTESGGEQVVQPARRRERLRAARSRARRCRNMLLRHRNQLPFR 660
            ARAKQAERRAVLRGTVDGNAAAAAVQSARTGASALRVTADVEAVEDSVGEIASCGASIVVADTAEDLVQELHTDQSARREVSALRAEADVVMVARSGASGEMAVDDSVGGIASCEASIVVAATADQSARREVSXXXXXXXXXXXXXXXXXXAASGVSTLVEGIYGILPDDVLVSQAEQTESGGEQVVQPARRRERLRAARSRARRCRNMLLRHRNQLPFR
Sbjct:    1 ARAKQAERRAVLRGTVDGNAAAAAVQSARTGASALRVTADVEAVEDSVGEIASCGASIVVADTAEDLVQELHTDQSARREVSALRAEADVVMVARSGASGEMAVDDSVGGIASCEASIVVAATADQSARREVSXXXXXXXXXXXXXXXXXXAASGVSTLVEGIYGILPDDVLVSQAEQTESGGEQVVQPARRRERLRAARSRARRCRNMLLRHRNQLPFR 220

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|41331 vs. uniprot

BLAST of jgi.p|Trimin1|41331 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835Z2C2_9STRA	1.060e-113	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_209	contig	Contig_209:191232..193699 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|41331\|CE41330_172
Hectar predicted targeting category	other localisation
TranscriptId	41653
Track	FilteredModels1
ProteinId	41331

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|41331	gene_17112	Tribonema minus UTEX_B_3156	gene	Contig_209 191232..193699 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|41331	Trimin1\|41331\|CE41330_172	Tribonema minus UTEX_B_3156	polypeptide	Contig_209 191232..193269 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_17112_1	exon_17112_1	Tribonema minus UTEX_B_3156	exon	Contig_209 191232..191313 +
exon_17112_2	exon_17112_2	Tribonema minus UTEX_B_3156	exon	Contig_209 191395..191541 +
exon_17112_3	exon_17112_3	Tribonema minus UTEX_B_3156	exon	Contig_209 191989..192141 +
exon_17112_4	exon_17112_4	Tribonema minus UTEX_B_3156	exon	Contig_209 192463..192624 +
exon_17112_5	exon_17112_5	Tribonema minus UTEX_B_3156	exon	Contig_209 193151..193699 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_17112	CDS_17112	Tribonema minus UTEX_B_3156	CDS	Contig_209 191232..191313 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_17112	UTR3_17112	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_209 193270..193699 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_209:191232..193699+
coding sequence from alignment at Contig_209:191232..193699+

spliced messenger RNA

>mRNA_17112 ID=mRNA_17112|Name=jgi.p|Trimin1|41331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1093bp|location=Sequence derived from alignment at Contig_209:191232..193699+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGAGAGCCAAGCAGGCAGAGCGGCGAGCAGTGCTGCGAGGAACTGTGGA
TGGAAATGCCGCTGCGGCAGCGGTTCAGTCAGCGAGGACAGGAGCCTCAG
CATTGCGCGTGACAGCAGATGTGGAGGCGGTGGAAGACTCTGTTGGGGAG
ATTGCTTCATGTGGGGCATCAATAGTGGTGGCGGACACAGCTGAAGACCT
AGTGCAGGAGTTGCACACTGACCAGTCAGCGCGGCGAGAAGTTTCAGCAT
TGCGCGCAGAAGCAGATGTGGTGATGGTTGCCCGCTCTGGTGCCAGTGGG
GAGATGGCGGTGGACGACTCTGTTGGGGGGATTGCTTCATGTGAGGCATC
AATAGTGGTGGCGGCCACAGCTGACCAGTCAGCGCGGCGAGAAGTTTCAG
CAGAAGCAGATGTGGTGATGGTCGCCCGCTCTGGTGCCAGTGGGGAGATG
GGGGCAGCGTCTGGCGTATCGACACTGGTGGAGGGCATATATGGTATACT
GCCAGATGATGTACTGGTTTCACAAGCCGAACAGACTGAGTCAGGTGGGG
AACAAGTGGTGCAACCAGCACGCCGACGAGAACGCCTGCGGGCCGCTCGC
TCCAGAGCTCGACGATGCCGCAACATGCTTCTACGCCACAGAAACCAACT
CCCCTTTCGCTGAGAAATGCCCCCAAAACGACCACTTCGACAAGAGCGCA
GACCTCTCGGAGCAAGACTCGCAGCTGTACACGACAGGCACGCAGGGCAA
GTTCTTACACAGGATCTGTTACAAGGCCAGGTGGGCTGCGGTGCAGGGCC
TGATCGCGGAACACGAGAAGCTCAAGGCCAACAATGCCGGCAGCGCATCC
GTCTCAACCTCGCCTCCCAAAAAGCCTCGCTTCAACAATTGTTTTTAAAG
CATGACCGCGCAACGTGGTCAGCGCGACCGCCTCCGCCATATTGACGTGC
CACTGGAGTCCAGCCACTGTGACAGTCAGGTTGCAAACATTTCCCGTAAG
CCTTCAACATCGCTGTAAATCATCACTTTGAGGTCACTGTACGATAGCTC
ACATCGCTTGCTACATCATGTAAATACACAAGTGCTGCACCCC

protein sequence of jgi.p|Trimin1|41331

>Trimin1|41331|CE41330_172 ID=Trimin1|41331|CE41330_172|Name=jgi.p|Trimin1|41331|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=221bp
ARAKQAERRAVLRGTVDGNAAAAAVQSARTGASALRVTADVEAVEDSVGE
IASCGASIVVADTAEDLVQELHTDQSARREVSALRAEADVVMVARSGASG
EMAVDDSVGGIASCEASIVVAATADQSARREVSAEADVVMVARSGASGEM
GAASGVSTLVEGIYGILPDDVLVSQAEQTESGGEQVVQPARRRERLRAAR
SRARRCRNMLLRHRNQLPFR*

mRNA from alignment at Contig_209:191232..193699+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_17112 ID=mRNA_17112|Name=jgi.p|Trimin1|41331|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2468bp|location=Sequence derived from alignment at Contig_209:191232..193699+ (Tribonema minus UTEX_B_3156 )
GCGAGAGCCAAGCAGGCAGAGCGGCGAGCAGTGCTGCGAGGAACTGTGGA
TGGAAATGCCGCTGCGGCAGCGGTTCAGTCAGGTAACAATTTTCTGACAG
GTGTACCAAACACGAGCGACACCTTAATCTTTGCTGTGTCGCTGCATCCC
TGATGTTGTGCAGCGAGGACAGGAGCCTCAGCATTGCGCGTGACAGCAGA
TGTGGAGGCGGTGGAAGACTCTGTTGGGGAGATTGCTTCATGTGGGGCAT
CAATAGTGGTGGCGGACACAGCTGAAGACCTAGTGCAGGAGTTGCACACT
GACCAGTCAGGTCAGTTGAAACTTCATTCTGGCTTTGACCACTCAGGCTG
CTGAAACGTTCATTGCGCTGGTGAGTCCCTGGGGCCTGCTGCTGAAACGT
TCATTGCGCTGGTGGGTCACTGGGGCCTGTCAGTGAGCTTAGCTCAGGTC
GCATAATGGTCTCTTTTTTTTATTGCGCGTGTTGGCTACACAACGACTTG
CAATATCGGCTTCATTCTTGTGCGAATGTTTGCAGTTTGTATCGCACATC
AATGTTGATTAACGTGCAGTTGATTGCACTGTGTATATACATATATAATT
GCTAGTTGGTGGGCGAATATGTGGTATTGTTGCTAACAAGCTTTTAAAAA
TATTATTTCAGGTTGCCCTCACACACCTTAATTCAAAGGAGGCAATCACC
CGACTTGTTGAGGGTTATAGTATTACCTAACACAAGAGTTTTTCAATTCT
TCTGCAGCGCGGCGAGAAGTTTCAGCATTGCGCGCAGAAGCAGATGTGGT
GATGGTTGCCCGCTCTGGTGCCAGTGGGGAGATGGCGGTGGACGACTCTG
TTGGGGGGATTGCTTCATGTGAGGCATCAATAGTGGTGGCGGCCACAGCT
GACCAGTCAGGTCAGACATTGCTGAAAAGTTCATTCTGGCTTGACCACAC
TGTCAGTGACTGTGACTTTGCTGAGATGTTCATTGCGCTGGTGAGTGCCT
GTCAGTGACTCAGAGCTCTAAGTTAGCCTAGATCGCATGATGCTCTTATA
TTCTAATTGAACGTTTGGTATTCTAATTGAGCGTGTTGGCTCAACAACAA
CTTGCAATATCGGCAGTATGTACCGCACATCAGTGTTGGTTCACGTGCAG
TTGATTGCACTGTGATATATCAAACATCAGTGGTCTGCGGATATGCACCA
TTAACACAAGAATTTTTCAATTCTTTTGCAGCGCGGCGAGAAGTTTCAGC
AGAAGCAGATGTGGTGATGGTCGCCCGCTCTGGTGCCAGTGGGGAGATGG
GGGCAGCGTCTGGCGTATCGACACTGGTGGAGGGCATATATGGTATACTG
CCAGATGATGTACTGGTTTCACAAGCCGAACAGACTGAGTCAGGTAAGAC
CGTGACATTGCTGGATCAGAGTGAATCAAGTACATCATGATATTATGTAT
ATATATAGATGAGTCAGACGTGAATTTGAAGATTTTGATTGTCCAGCGAC
ATCCTTGAAAAATAAGGCCAATGACTGAATTTGCGTCTTTTATAAAGCTT
GTAAGGGCTAATTCAGTTGCTGATATGTTGATCAGTGTCAACCTCAGGCT
GTTGAATGTGACAATGCTAATTCAGTTGATTAGTGTCAACATCAGGCTGT
TGAATGTGACAATGCATAGACCCTCAGACTGCGCACTCAGACTGTGACGG
TCCACAACATGGCATAATCATTGATGCAGGCTGCGCTTGCTTGAGCAATA
CGTTAGTCAACGAGTCTTTCAAAACACAGCATAGACCTCAGTCTGATGTA
CGTTTTGTAAACTACACCGTCACGGTGACTGTGGCATGTTGCGCTTATCA
ACTAAGTCTTGTTGAATAATATGTGGATTAGTCTCGGCCTCACTGACAGG
CTGTTTAATGTGATTCAAGGTGGGGAACAAGTGGTGCAACCAGCACGCCG
ACGAGAACGCCTGCGGGCCGCTCGCTCCAGAGCTCGACGATGCCGCAACA
TGCTTCTACGCCACAGAAACCAACTCCCCTTTCGCTGAGAAATGCCCCCA
AAACGACCACTTCGACAAGAGCGCAGACCTCTCGGAGCAAGACTCGCAGC
TGTACACGACAGGCACGCAGGGCAAGTTCTTACACAGGATCTGTTACAAG
GCCAGGTGGGCTGCGGTGCAGGGCCTGATCGCGGAACACGAGAAGCTCAA
GGCCAACAATGCCGGCAGCGCATCCGTCTCAACCTCGCCTCCCAAAAAGC
CTCGCTTCAACAATTGTTTTTAAAGCATGACCGCGCAACGTGGTCAGCGC
GACCGCCTCCGCCATATTGACGTGCCACTGGAGTCCAGCCACTGTGACAG
TCAGGTTGCAAACATTTCCCGTAAGCCTTCAACATCGCTGTAAATCATCA
CTTTGAGGTCACTGTACGATAGCTCACATCGCTTGCTACATCATGTAAAT
ACACAAGTGCTGCACCCC

Coding sequence (CDS) from alignment at Contig_209:191232..193699+

>mRNA_17112 ID=mRNA_17112|Name=jgi.p|Trimin1|41331|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=663bp|location=Sequence derived from alignment at Contig_209:191232..193699+ (Tribonema minus UTEX_B_3156 )
GCGAGAGCCAAGCAGGCAGAGCGGCGAGCAGTGCTGCGAGGAACTGTGGA
TGGAAATGCCGCTGCGGCAGCGGTTCAGTCAGCGAGGACAGGAGCCTCAG
CATTGCGCGTGACAGCAGATGTGGAGGCGGTGGAAGACTCTGTTGGGGAG
ATTGCTTCATGTGGGGCATCAATAGTGGTGGCGGACACAGCTGAAGACCT
AGTGCAGGAGTTGCACACTGACCAGTCAGCGCGGCGAGAAGTTTCAGCAT
TGCGCGCAGAAGCAGATGTGGTGATGGTTGCCCGCTCTGGTGCCAGTGGG
GAGATGGCGGTGGACGACTCTGTTGGGGGGATTGCTTCATGTGAGGCATC
AATAGTGGTGGCGGCCACAGCTGACCAGTCAGCGCGGCGAGAAGTTTCAG
CAGAAGCAGATGTGGTGATGGTCGCCCGCTCTGGTGCCAGTGGGGAGATG
GGGGCAGCGTCTGGCGTATCGACACTGGTGGAGGGCATATATGGTATACT
GCCAGATGATGTACTGGTTTCACAAGCCGAACAGACTGAGTCAGGTGGGG
AACAAGTGGTGCAACCAGCACGCCGACGAGAACGCCTGCGGGCCGCTCGC
TCCAGAGCTCGACGATGCCGCAACATGCTTCTACGCCACAGAAACCAACT
CCCCTTTCGCTGA