Trimin1|354089|estExt_Genemark1.C_Ctg_2080009 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354089
Unique NameTrimin1|354089|estExt_Genemark1.C_Ctg_2080009
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length521
Homology
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A836CH62_9STRA (SRP40, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH62_9STRA)

HSP 1 Score: 383 bits (983), Expect = 2.100e-124
Identity = 520/520 (100.00%), Postives = 520/520 (100.00%), Query Frame = 0
Query:    1 MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSIYAGHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVSPAKPAQPAMNGHTPSAKAAKQSAAXXXXXXXXXKAAPPVAEPETSXXXXXXXXXXXXXXXXPAKAXXXXXXXXXXXXXXXXXXXXXDDAAPAPKRAKQTPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXPCSSSSDSNDSSDSEEDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXAGGTATKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
            MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSIYAGHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVSPAKPAQPAMNGHTPSAKAAKQSAAXXXXXXXXXKAAPPVAEPETSXXXXXXXXXXXXXXXXPAKAXXXXXXXXXXXXXXXXXXXXXDDAAPAPKRAKQTPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXPCSSSSDSNDSSDSEEDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXAGGTATKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE
Sbjct:    1 MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSIYAGHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDVSPAKPAQPAMNGHTPSAKAAKQSAAXXXXXXXXXKAAPPVAEPETSXXXXXXXXXXXXXXXXPAKAXXXXXXXXXXXXXXXXXXXXXDDAAPAPKRAKQTPAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXPCSSSSDSNDSSDSEEDAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXAGGTATKRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: D7FH06_ECTSI (LisH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH06_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 1.350e-22
Identity = 54/78 (69.23%), Postives = 61/78 (78.21%), Query Frame = 0
Query:  443 GEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
            GEAF+RV+DE+WV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  331 GEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 408          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A6H5JYW0_9PHAE (LisH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW0_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 2.700e-22
Identity = 55/80 (68.75%), Postives = 62/80 (77.50%), Query Frame = 0
Query:  441 SGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFDE 520
            S GEAF+RV+DE+WV  L  G D N YE TFGQ GYG+KA + L  VRGKDFRHEKTKKKRGSYRGG I+M S S KFD+
Sbjct:  438 SQGEAFKRVQDEQWVGGLKKGFDDNTYEGTFGQGGYGFKASEKLSKVRGKDFRHEKTKKKRGSYRGGEISMNSYSVKFDD 517          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A2V0PGM2_9CHLO (SRP40_C domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGM2_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 1.700e-21
Identity = 64/117 (54.70%), Postives = 76/117 (64.96%), Query Frame = 0
Query:  421 PSAKTPEVKQPAAAAKTP-----------GSSGG------EAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITM-ASNSFKFD 519
            P+AK  +   PA  A  P           G+ GG      +AF+RVKD EW+ K   G+ +NHYEDTFGQDG+G+KA QVL  VRGKDFRHEKTKKKRGSYRGG I   A+ S+KFD
Sbjct:  279 PAAKKAKAATPATPAAKPAANGAASEPDSGADGGRNTTGAKAFKRVKDNEWMGK--KGSWSNHYEDTFGQDGWGFKAQQVLGQVRGKDFRHEKTKKKRGSYRGGQIDPNATFSYKFD 393          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A061RD47_9CHLO (SRP40_C domain-containing protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RD47_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 2.880e-20
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 0
Query:  439 GSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFD 519
            G +  +AF+RV++EEW+ K   G+  N Y  TFG  G+GYKA +VL  VRGKDFRHEKTKKKRGSYRGG I + SNSFKF+
Sbjct:  199 GGTAXKAFQRVREEEWIGK--KGSWDNSYTGTFGAQGWGYKAQEVLGKVRGKDFRHEKTKKKRGSYRGGKIELGSNSFKFE 277          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A0D2MY90_9CHLO (SRP40_C domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MY90_9CHLO)

HSP 1 Score: 105 bits (261), Expect = 3.190e-20
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 0
Query:  440 SSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTI-TMASNSFKFD 519
            ++G +AF+RV DEEW+ K   G+ +NHYEDTFGQ G+G+KA QVL  VRGKDFRHEKTKKKRGSYRGG I + A+ S+KFD
Sbjct:  531 TTGAKAFKRVNDEEWLGK--KGSMSNHYEDTFGQSGWGFKAQQVLGAVRGKDFRHEKTKKKRGSYRGGQIDSNATFSYKFD 609          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7S1T5X8_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T5X8_9CHLO)

HSP 1 Score: 100 bits (248), Expect = 8.420e-20
Identity = 56/104 (53.85%), Postives = 72/104 (69.23%), Query Frame = 0
Query:  420 TPSAKTPEVKQPAAAAKTPGSSGG---EAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTI-TMASNSFKFD 519
            T +A +P  ++   +A++ G   G   +AF+RVK+EEW+ K   G   N Y  TFGQDG+GYKA +VL  VRGKDFRHEKTKKKRG+Y+GG I  M SNS KF+
Sbjct:  184 TDNAASPAAEEDEKSARSDGKKFGTAAKAFQRVKEEEWLGK--KGAWDNSYVGTFGQDGWGYKAQEVLGKVRGKDFRHEKTKKKRGTYKGGKIDNMGSNSIKFE 285          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7R9VDW8_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VDW8_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 1.300e-19
Identity = 49/70 (70.00%), Postives = 58/70 (82.86%), Query Frame = 0
Query:  440 SSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTI 509
            ++G +AF+RVK +EW+DK A    +NHYEDTFGQDG+G+KA QVL  VRGKDFRHEKTKKKRGSY GG I
Sbjct:  262 TTGAKAFQRVKADEWIDKKA--ARSNHYEDTFGQDGWGFKAQQVLGQVRGKDFRHEKTKKKRGSYLGGAI 329          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7S3Y1Y8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1Y8_HETAK)

HSP 1 Score: 98.2 bits (243), Expect = 1.640e-19
Identity = 57/100 (57.00%), Postives = 66/100 (66.00%), Query Frame = 0
Query:  422 SAKTPEVKQPAAAAKTPGSSG--GEAFRRVKDEEWVDKLANGT-DTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKF 518
            S+  PE K      KTP S    GEAF+RV  + W   + +     N YE TFG DGYG KA +VL+ VRGKDFRHEKTKKKRG+YRGG IT+ASNS KF
Sbjct:  144 SSPKPEQK------KTPRSERVQGEAFKRVCSDTWGSAIKHDALKDNSYEGTFGGDGYGAKASEVLLKVRGKDFRHEKTKKKRGNYRGGQITLASNSIKF 237          
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Match: A0A7S3QVY0_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QVY0_DUNTE)

HSP 1 Score: 100 bits (250), Expect = 1.780e-19
Identity = 53/84 (63.10%), Postives = 63/84 (75.00%), Query Frame = 0
Query:  436 KTPGSSGGEAFRRVKDEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKKRGSYRGGTITMASNSFKFD 519
            K  G+S  +AF+RVK EEW+ K   G   N YE TFGQDG+G+KA Q L  VRGKDFRHEKTKKKRG+YRGG I  +S+S+KFD
Sbjct:  296 KKKGNSTFKAFQRVKAEEWLGK--KGAWDNSYEGTFGQDGWGFKAQQALGAVRGKDFRHEKTKKKRGTYRGGVIDGSSHSYKFD 377          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354089 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CH62_9STRA2.100e-124100.00SRP40, C-terminal domain-containing protein n=1 Ta... [more]
D7FH06_ECTSI1.350e-2269.23LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JYW0_9PHAE2.700e-2268.75LisH domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A2V0PGM2_9CHLO1.700e-2154.70SRP40_C domain-containing protein n=1 Tax=Raphidoc... [more]
A0A061RD47_9CHLO2.880e-2061.73SRP40_C domain-containing protein n=1 Tax=Tetrasel... [more]
A0A0D2MY90_9CHLO3.190e-2066.67SRP40_C domain-containing protein n=1 Tax=Monoraph... [more]
A0A7S1T5X8_9CHLO8.420e-2053.85Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
A0A7R9VDW8_9CHLO1.300e-1970.00Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A7S3Y1Y8_HETAK1.640e-1957.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3QVY0_DUNTE1.780e-1963.10Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 396..416
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..448
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 388..413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 366..385
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..285
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 322..343
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 132..151
NoneNo IPR availablePANTHERPTHR23216NUCLEOLAR AND COILED-BODY PHOSPHOPROTEIN 1coord: 432..519
coord: 7..437
IPR007718Srp40, C-terminalPFAMPF05022SRP40_Ccoord: 446..518
e-value: 2.9E-25
score: 88.9
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 5..37
score: 8.880581

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_208contigContig_208:55882..60639 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354089mRNA_16912Tribonema minus UTEX_B_3156 mRNAContig_208 55615..60639 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354089|estExt_Genemark1.C_Ctg_2080009 ID=Trimin1|354089|estExt_Genemark1.C_Ctg_2080009|Name=jgi.p|Trimin1|354089|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=521bp
MSGPPASALYPLVHRFLAGCGLAKTAKSLQKEAGLSDDAIKAADGDLLSI
YAGHLAAAAAAGATPKSAAAAAAGSSSDSDSDSSSDEDVSPAKPAQPAMN
GHTPSAKAAKQSAAAAKAFAAKSKAAPPVAEPETSASSNSDSDSSSESQA
EPAKAAPPAAASKKRKAPAAGSSASADDAAPAPKRAKQTPAAVAPAAAPQ
KTPAAKTPAARTPAAKAPAAPCSSSSDSNDSSDSEEDAGAAPAKAALVTP
VSTAGKKKRPAAAMAKAPSFDSSGGSSSSDSEGEGGAGGTATKRAAAAAA
VNGAASKPAAAAAVNGKAKAAAASSSDDSSDDSAESSDNVPPTVVKPQRA
AAAANGAADAAGASSDSSDDSDDDSDDDSSDSDSSSSSEDEGAAHAKAAA
KRKAEEQRRRHAAEAAAAWTPSAKTPEVKQPAAAAKTPGSSGGEAFRRVK
DEEWVDKLANGTDTNHYEDTFGQDGYGYKAHQVLINVRGKDFRHEKTKKK
RGSYRGGTITMASNSFKFDE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007718Srp40_C
IPR006594LisH