Trimin1|354084|estExt_Genemark1.C_Ctg_2070020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354084
Unique Name	Trimin1\|354084\|estExt_Genemark1.C_Ctg_2070020
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	578

Homology

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BLAST of jgi.p|Trimin1|354084 vs. uniprot
Match: A0A836CHW0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHW0_9STRA)

HSP 1 Score: 343 bits (881), Expect = 1.270e-107
Identity = 577/577 (100.00%), Postives = 577/577 (100.00%), Query Frame = 0

Query:    1 MASLGSDVPASGHERQAPLSNKDLQEQPAPAFEGGTSAEQEPQAAAPGIIGSAVGAVENLVHGVKNMVLGPDQPAEQQQASEGAAREAETAKAKXXXXXXXXXXXXXXXXXAVVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGEEGDAAAAAGRDKAAETGQQAQDAAATGAGKAXXXXXXXSAQXQGAVEATKAXXQELQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQASAYGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGGEAMLRTENAFRAREASGGSGGVSEAVAGNSGGAAQAEQQQSALTAPTGDMAYGQAAQESAXXXXXXPTQGVVAPPLLAKPVLLSTPSDPSARWATEEETLRGGAR 577
            MASLGSDVPASGHERQAPLSNKDLQEQPAPAFEGGTSAEQEPQAAAPGIIGSAVGAVENLVHGVKNMVLGPDQPAEQQQASEGAAREAETAKAKXXXXXXXXXXXXXXXXXAVVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGEEGDAAAAAGRDKAAETGQQAQDAAATGAGKAXXXXXXXSAQXQGAVEATKAXXQELQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQASAYGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGGEAMLRTENAFRAREASGGSGGVSEAVAGNSGGAAQAEQQQSALTAPTGDMAYGQAAQESAXXXXXXPTQGVVAPPLLAKPVLLSTPSDPSARWATEEETLRGGAR
Sbjct:    1 MASLGSDVPASGHERQAPLSNKDLQEQPAPAFEGGTSAEQEPQAAAPGIIGSAVGAVENLVHGVKNMVLGPDQPAEQQQASEGAAREAETAKAKXXXXXXXXXXXXXXXXXAVVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAAGEEGDAAAAAGRDKAAETGQQAQDAAATGAGKAXXXXXXXSAQXQGAVEATKAXXQELQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQASAYGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGGEAMLRTENAFRAREASGGSGGVSEAVAGNSGGAAQAEQQQSALTAPTGDMAYGQAAQESAXXXXXXPTQGVVAPPLLAKPVLLSTPSDPSARWATEEETLRGGAR 577

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354084 vs. uniprot

BLAST of jgi.p|Trimin1|354084 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A836CHW0_9STRA	1.270e-107	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 271..291
None	No IPR available	COILS	Coil	Coil	coord: 362..382
None	No IPR available	GENE3D	1.20.120.20	Apolipoprotein	coord: 327..475 e-value: 2.2E-7 score: 32.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 504..519
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 266..282
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 132..164
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..577
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..52
None	No IPR available	SUPERFAMILY	58113	Apolipoprotein A-I	coord: 309..448

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_207	contig	Contig_207:183737..188787 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354084	mRNA_17550	Tribonema minus UTEX_B_3156	mRNA	Contig_207 183737..188787 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354084|estExt_Genemark1.C_Ctg_2070020 ID=Trimin1|354084|estExt_Genemark1.C_Ctg_2070020|Name=jgi.p|Trimin1|354084|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=578bp
MASLGSDVPASGHERQAPLSNKDLQEQPAPAFEGGTSAEQEPQAAAPGII
GSAVGAVENLVHGVKNMVLGPDQPAEQQQASEGAAREAETAKAKAGEAAA
AGKDAARSGGSAVVQGAQSAVGAVTGAVTGAASAVSQRATDATQATSQRA
GDAYNATTQKTGDVARGANERAGGVVQAVENAAAGAVGYVRSGAAAVMGT
FTGGARAAGEEGDAAAAAGRDKAAETGQQAQDAAATGAGKAQEKGAEASA
QAQGAVEATKAKAQELQGKAGEKVEQARDAAGETAEQLKQQGAQAVESGK
GAAQAAATKAQELSQQAGAQASAYGDAAATQAAGARAAAKERAQEIGQQA
RDKAYGARDATAETAESAKQKASETAEAAKAKTAETADAAKTKTAETTEA
AKAKTAEMAEAAKTKAAETTEAAKAKTSETAEAAKAKTAETTEAAKSKTA
ETADAAKTKTAEGAQAAQQRGGEAMLRTENAFRAREASGGSGGVSEAVAG
NSGGAAQAEQQQSALTAPTGDMAYGQAAQESAAAEAGAPTQGVVAPPLLA
KPVLLSTPSDPSARWATEEETLRGGAR*