mRNA_11798 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A835ZHU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHU6_9STRA) HSP 1 Score: 439 bits (1130), Expect = 1.250e-154 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1 Query: 1 MKKEKSSIFETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQCALRSAAPGGAAEVIELATAAIAMDAGSAKAYFWRAKARMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLFERARGGARQLGAAAAGXXXKGDGGLGVRGAAQGVRFLHRATMAFFVGTVALAVLGAVFVYRKGVLFPHQQEL 732 MKKEKSSIFETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQCALRSAAPGGAAEVIELATAAIAMDAGSAKAYFWRAKARMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLFERARGGARQLGAAAAGXXXKGDGGLGVRGAAQGVRFLHRATMAFFVGTVALAVLGAVFVYRKGVLFPHQQEL Sbjct: 1 MKKEKSSIFETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQCALRSAAPGGAAEVIELATAAIAMDAGSAKAYFWRAKARMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLFERARGGARQLGAAAAGXXXKGDGGLGVRGAAQGVRFLHRATMAFFVGTVALAVLGAVFVYRKGVLFPHQQEL 244
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A6H5K9H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9H3_9PHAE) HSP 1 Score: 144 bits (363), Expect = 3.970e-38 Identity = 111/252 (44.05%), Postives = 141/252 (55.95%), Query Frame = 1 Query: 7 KEKSSIFETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQCA--LRSAAPGG--------------AAEVIELATAAIAMDAGSAKAYFWRAKARMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLFERARG-----GARQLGAAAA-----GXXXKGDGGLGVR-GAAQGVRFLHRATMAFFVGTVALAVLG 681 KEKS +FE RL A +LR+ GNE FK G + A Y RALHHVD DELQ+ F +D HR +L K+PVLLN+CQC L +A GG A E A AI +DA AKA+FWR KA+M A GD+ + D+ AA+LAPGD+ VR L++LR++ +E E R +W G+F+ G RQ+ AAA G G GG G R G G R L+ A++A VG VA AV G Sbjct: 20 KEKSYLFEERLETAGRLRQLGNERFKRGRMEGAAEAYERALHHVDFDELQINFDFSDKHRESLTTAKLPVLLNLCQCLAKLGGSARGGXXXXXXXXXXRSDNAGRAAEFAGQAIELDATCAKAWFWRGKAKMDA---GDLEGSSTDLKEAAKLAPGDKPVRLALKSLRIKQKEVEAARRSLWGGVFKGGAAKTPAPGQRQVEEAAARARGEGLQDPGRGGGGDRRGGTGGDRLLY-ASIA--VGLVAFAVAG 265
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: D8LGG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG3_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 5.350e-20 Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1 Query: 7 KEKSSIFETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQC 237 KEKS +FE RL A +LR+ GNE FK G + A Y RALHHVD DELQ+ F +D HR +L A K+PVLLN+CQC Sbjct: 20 KEKSYLFEERLETAGRLRQLGNERFKRGCMEDAAEAYERALHHVDFDELQINFDFSDKHRESLTAAKLPVLLNLCQC 96
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A7S2JE27_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JE27_9DINO) HSP 1 Score: 74.7 bits (182), Expect = 4.410e-12 Identity = 61/169 (36.09%), Postives = 89/169 (52.66%), Query Frame = 1 Query: 37 LADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALF----AVKVPVLLNICQCALRSAAPGGAAEVIELATAAIAMDAGSAKAYFWRAKARMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLFERARG 531 LA A R GN+ F+AG+ AAA++ Y AL L ++ D AL A +VP LN+ C LR A P AA +EL + + +AKA + + KA + G++A A+ ++A+A +LAP D VR L ALR R R ++ R ++ + GLF R G Sbjct: 1 LAAAEAKRAEGNDRFRAGEAAAAQKAYDEALR------LLLRQAFEDVEDKALLDRVQACRVPAQLNLALCCLR-AEPCEAARALELCEEVLEAEPKNAKATYRKGKALLEL---GEVAEAEYELAQACKLAPADAAVRRDLDALRRRIRGEKEREKKTYGGLFGRGPG 159
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A7S3B694_9VIRI (Peptidylprolyl isomerase (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3B694_9VIRI) HSP 1 Score: 62.0 bits (149), Expect = 3.060e-7 Identity = 56/163 (34.36%), Postives = 81/163 (49.69%), Query Frame = 1 Query: 34 RLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQCALRSAAPGGAAEVIELATAAIAMDAGSAKAYFWRAKARMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLFER 522 +L A + AGNELFKAG + A +RY +A ++ D QFG + +AA +KV + N AL+ A E +A+DA KA+F R AR A GD A D + EL P +R RA + +R + EQ+R+ R + G+FE+ Sbjct: 392 KLEMAESKKAAGNELFKAGKMERALKRYEKAAQFIEYD---TQFGADE--KAAASKIKVSIFGNRAAVALKLQQWANAITDCEKV---LAIDALHVKAHFRRGTARAAL---GDHDAALADFKKVLELDPTNRDARAQYKRVRAKVAEQDRKDMRTFGGMFEK 543
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A2D4BW24_PYTIN (Peptidylprolyl isomerase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW24_PYTIN) HSP 1 Score: 58.9 bits (141), Expect = 3.880e-6 Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 1 Query: 34 RLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQCALRSAAPGGAAEVIELATAAIAMDAGSAKAYFWRAKARMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLF 516 +LA+ +KL+E G ELFKA + A +Y A + M++L + + + + + + LN C L+ + AE + +A+ A+A DA S KA F R RM D+ RA+ED+ A ++ P +R VR L+ L+ + ++ + + ++ GLF Sbjct: 708 KLAEGTKLKEEGTELFKAKKFSDAVAKYNEAASY--MEDL---YDIEEDDKKKMKEFQTTCYLNSAMCYLKIS---DYAEAVAVASKALANDAKSVKALFRRGVGRMHL---NDLDRAKEDLLAAGKIDPQNREVRRELEVLKQKMKDARAKEKSVFGGLF 857
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A1Y1W7X0_9FUNG (Peptidyl-prolyl cis-trans isomerase D n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1W7X0_9FUNG) HSP 1 Score: 57.0 bits (136), Expect = 1.030e-5 Identity = 58/174 (33.33%), Postives = 87/174 (50.00%), Query Frame = 1 Query: 28 ETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVD----MDELQVQFGLTDAHRAALFAVKVPVLLNICQCALRSAAPGGAAEVIELATAAIAM------DAGSAKAYFWRAKA-RMAAAGGGDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQERRSRRMWSGLF 516 E L A+K++ GN+ FKAGDL A +Y +AL +++ D++ D R AVKVPV LN C L+ G A+ I+ T I M + KAYF R A R + A +A +D+ +A EL+P D+GV + + +Q+ R ++M+S LF Sbjct: 184 EVALEVATKMKGLGNDGFKAGDLTTAVAKYSKALRYLNEYPAFDKIN---DPEDKLRPQFVAVKVPVFLNRALCYLKQ---GKFAQAIQDCTFVIEMADKEITEKDLTKAYFRRGSAYRQSKAHD----KALDDLTKAKELSPQDKGVLNEITLTKKAINDQKSREKQMYSKLF 347
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A7S4HFX2_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4HFX2_9EUKA) HSP 1 Score: 52.0 bits (123), Expect = 3.480e-5 Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1 Query: 4 KKEKSSIFETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDELQV 159 K+E+ IFE RL A+++++ GNE F+AG+ A RRY+RAL+H +DE+Q+ Sbjct: 48 KEERGYIFEERLEKATQMKDVGNEHFRAGEWDLALRRYKRALYHGHIDEMQM 99
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Match: A0A7S0EXW3_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EXW3_9EUKA) HSP 1 Score: 53.5 bits (127), Expect = 8.920e-5 Identity = 52/142 (36.62%), Postives = 75/142 (52.82%), Query Frame = 1 Query: 70 NELFKAGDLAAAERRYRRALHHVDMDELQVQFGLTDAHRAALFAVKVPVLLNICQCALRSAAPGGAA---EVIELATAAIAMDAGSAKAYFWRAKARMAAAGG-GDIARAQEDMARAAELAPGDRGVRAGLQALRMRAREQE 483 N LFK GD A A RRY++A+ +D+ E+ Q+ D R +++ + LN+ C LR+ GA + I A+ + D + KA F R +A + +A A ED+ RAAEL PGD GVR+ L RAR Q+ Sbjct: 96 NALFKRGDAARANRRYKKAM--LDL-EVPTQWEADDNVRRN--QLRLSLHLNVAACGLRATDAYGATRYLDTISHASRVLEADPTNVKALFRRGQAHLLRPNHINGLALALEDLRRAAELEPGDTGVRSML----ARARAQQ 228 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351884 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11798 ID=mRNA_11798|Name=jgi.p|Trimin1|351884|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=829bp|location=Sequence derived from alignment at Contig_102:111346..112380+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAAGAAGGAGAAGTCGTCGATATTCGAAACTAGGCTAGCAGATGCCTCback to top protein sequence of jgi.p|Trimin1|351884 >Trimin1|351884|estExt_Genemark1.C_Ctg_1020015 ID=Trimin1|351884|estExt_Genemark1.C_Ctg_1020015|Name=jgi.p|Trimin1|351884|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=245bp MKKEKSSIFETRLADASKLREAGNELFKAGDLAAAERRYRRALHHVDMDEback to top mRNA from alignment at Contig_102:111346..112380+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11798 ID=mRNA_11798|Name=jgi.p|Trimin1|351884|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1035bp|location=Sequence derived from alignment at Contig_102:111346..112380+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_102:111346..112380+ >mRNA_11798 ID=mRNA_11798|Name=jgi.p|Trimin1|351884|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=735bp|location=Sequence derived from alignment at Contig_102:111346..112380+ (Tribonema minus UTEX_B_3156 )back to top |