Trimin1|354052|estExt_Genemark1.C_Ctg_2050023 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|354052
Unique NameTrimin1|354052|estExt_Genemark1.C_Ctg_2050023
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length518
Homology
BLAST of jgi.p|Trimin1|354052 vs. uniprot
Match: A0A836CH90_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH90_9STRA)

HSP 1 Score: 778 bits (2010), Expect = 3.960e-280
Identity = 517/517 (100.00%), Postives = 517/517 (100.00%), Query Frame = 0
Query:    1 MGAPAVGGAALAPRRVPGAWKRGCSAITVCGVNKSFKFKAGARVAARPATSRKRPLPHELEEDYNFKQEGEXXXXXXXCSAVAALPRHPSPHAGHLLGEAERGHLQRFLLAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXDSRTPLLLFLQAYGCERSTHAAGLMPALHEDLHGTCLRLLTHGARGLSRAMTPSATAXXXXXXXXXXXXDEALLWTGIALGALVRQRCGAAAADVHVYVACAFAALELCRGXXXXXXXXXXXXXXXXXXXXXXGESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERPAPQLLRAYMLLAWLQLHLEDYAGFFMSFHRATNVAWAISERRRQLHACSSGWDAAPQIDDETSFDDETGVALEASHGLKFCMSDRLGAAPQFDDKTRVLRVMVDNSGLYLDSDPDAKAVALHRLQHTFHRLSPPQYKDTGEGRPGSLLLTLAPDVEGLPHLTHFPSEAGGVDQAGDVDQLQPQRPGAVVAAALE 517
            MGAPAVGGAALAPRRVPGAWKRGCSAITVCGVNKSFKFKAGARVAARPATSRKRPLPHELEEDYNFKQEGEXXXXXXXCSAVAALPRHPSPHAGHLLGEAERGHLQRFLLAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXDSRTPLLLFLQAYGCERSTHAAGLMPALHEDLHGTCLRLLTHGARGLSRAMTPSATAXXXXXXXXXXXXDEALLWTGIALGALVRQRCGAAAADVHVYVACAFAALELCRGXXXXXXXXXXXXXXXXXXXXXXGESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERPAPQLLRAYMLLAWLQLHLEDYAGFFMSFHRATNVAWAISERRRQLHACSSGWDAAPQIDDETSFDDETGVALEASHGLKFCMSDRLGAAPQFDDKTRVLRVMVDNSGLYLDSDPDAKAVALHRLQHTFHRLSPPQYKDTGEGRPGSLLLTLAPDVEGLPHLTHFPSEAGGVDQAGDVDQLQPQRPGAVVAAALE
Sbjct:    1 MGAPAVGGAALAPRRVPGAWKRGCSAITVCGVNKSFKFKAGARVAARPATSRKRPLPHELEEDYNFKQEGEXXXXXXXCSAVAALPRHPSPHAGHLLGEAERGHLQRFLLAYEXXXXXXXXXXXXXXXXXXXXXXXXXXXDSRTPLLLFLQAYGCERSTHAAGLMPALHEDLHGTCLRLLTHGARGLSRAMTPSATAXXXXXXXXXXXXDEALLWTGIALGALVRQRCGAAAADVHVYVACAFAALELCRGXXXXXXXXXXXXXXXXXXXXXXGESGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERPAPQLLRAYMLLAWLQLHLEDYAGFFMSFHRATNVAWAISERRRQLHACSSGWDAAPQIDDETSFDDETGVALEASHGLKFCMSDRLGAAPQFDDKTRVLRVMVDNSGLYLDSDPDAKAVALHRLQHTFHRLSPPQYKDTGEGRPGSLLLTLAPDVEGLPHLTHFPSEAGGVDQAGDVDQLQPQRPGAVVAAALE 517          
BLAST of jgi.p|Trimin1|354052 vs. uniprot
Match: A0A835ZID0_9STRA (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZID0_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.320e-9
Identity = 47/127 (37.01%), Postives = 61/127 (48.03%), Query Frame = 0
Query:  321 ERPAPQLLRAYMLLAWLQLHLEDYAGFFMSFHRATNVAWAISERRRQLHACSSGWDAAPQIDDETSFDDETGVALEASHGLKFCMSDRLGAAPQFDDKTRVLRVMVDNSGLYLDSDPDAKAVALHRL 447
            +RP   LLRA+ LLAWL   LEDYAGF+  +HRAT+VAWAI   R+Q             ++ E   +++T + LE                        VLRV     G YLD DP A+AV   R+
Sbjct:  266 QRPVLPLLRAHALLAWLHFVLEDYAGFYAYYHRATDVAWAILRARQQAAPAGCRKSDGDALE-EMLAEEDTWLFLE------------------------VLRVGKAIGGAYLDGDPRARAVVQSRM 367          
BLAST of jgi.p|Trimin1|354052 vs. uniprot
Match: A0A835ZCH1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.780e-5
Identity = 53/191 (27.75%), Postives = 79/191 (41.36%), Query Frame = 0
Query:  321 ERPAPQLLRAYMLLAWLQLHLEDYAG-------FFMSFHRATNVAWAISERRRQLHACS-----------SGWDAAPQIDDETSFDDETGVALEA--------SHGLKFCMSDRLGAAPQFDDKTRVLRVMVDNSGLYLDSDPDAKAVALHRLQHTFH--RLSPPQYKDTGEGRPGSLLLTLAPDVEGLPH 483
            + P  +LLRAYM+ AWL L LED+AG       F++ +H A NVAW+I + +R                  G    P ID++     ET   ++A            +  +  RL A        R L V  D+ G  +            R        R    + +D GEGRPG++    +P ++GLP+
Sbjct:  259 DAPVAELLRAYMMAAWLLLKLEDFAGWLEGFARFYVFYHHAANVAWSILQLQRXXXXXXXXXXXXXXXXLGGPAEVPVIDEDAWMMLETLRVMKAFTDSYLAGDRQTRAAVRRRLSACFPRACFPRELAV-TDSYGTAVXXXXXXXXXGNVRXXXXXXXXRFQLERCRDVGEGRPGTMFTVYSPPMQGLPN 448          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354052 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CH90_9STRA3.960e-280100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZID0_9STRA2.320e-937.01Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A835ZCH1_9STRA2.780e-527.75Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 517..517
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 282..292
score: 45.45
coord: 142..158
score: 31.62
coord: 309..327
score: 45.39
coord: 252..267
score: 50.78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..321
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 489..512

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_205contigContig_205:210082..217569 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354052mRNA_17331Tribonema minus UTEX_B_3156 mRNAContig_205 210082..217612 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|354052|estExt_Genemark1.C_Ctg_2050023 ID=Trimin1|354052|estExt_Genemark1.C_Ctg_2050023|Name=jgi.p|Trimin1|354052|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=518bp
MGAPAVGGAALAPRRVPGAWKRGCSAITVCGVNKSFKFKAGARVAARPAT
SRKRPLPHELEEDYNFKQEGEEEEQQQQCSAVAALPRHPSPHAGHLLGEA
ERGHLQRFLLAYEVERGHLQRFLLAYEAERGHLQRFLLAYDSRTPLLLFL
QAYGCERSTHAAGLMPALHEDLHGTCLRLLTHGARGLSRAMTPSATAAAA
VAAAAAAAADEALLWTGIALGALVRQRCGAAAADVHVYVACAFAALELCR
GGGGGGGGGGSASGGSGFGGGGGGESGGGGDGGGGGDGGGGGDGGGGGDG
GGGGGGSGGGGGGGGGGRGGERPAPQLLRAYMLLAWLQLHLEDYAGFFMS
FHRATNVAWAISERRRQLHACSSGWDAAPQIDDETSFDDETGVALEASHG
LKFCMSDRLGAAPQFDDKTRVLRVMVDNSGLYLDSDPDAKAVALHRLQHT
FHRLSPPQYKDTGEGRPGSLLLTLAPDVEGLPHLTHFPSEAGGVDQAGDV
DQLQPQRPGAVVAAALE*
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