Trimin1|354039|estExt_Genemark1.C_Ctg_2040024 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354039
Unique Name	Trimin1\|354039\|estExt_Genemark1.C_Ctg_2040024
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	1171

Homology

[Close]

BLAST of jgi.p|Trimin1|354039 vs. uniprot
Match: A0A835Z1Q7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Q7_9STRA)

HSP 1 Score: 1450 bits (3754), Expect = 0.000e+0
Identity = 1170/1170 (100.00%), Postives = 1170/1170 (100.00%), Query Frame = 0

Query:    1 MIIAVPHGAPASPIASRGSPPPLSRVTVLNSMDTTASSLGFGFGSSALSAQRGGGRHEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDLAHMRAASVPTSCGSQRSGGXXXXXXXXXXXXXXXXSAFDWHRPGSAQRSSGHHHNVGRGAGNVNREDAEGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGSRSVRHESWTLEEDQRLLAAVRMEWRDNTDWHSVALVVGTRSKVQCRDRWHNALGPALAAFQQAGVWADGDAQYRLGAPGSAQLPQQPAQAGSAATFSHSSSVFGALNIGDTNQQGAQRREQELPVDNGHFHPAEDQLILRLQGQMGNCWGVIASQLPGRTLMRAALRTRSVGSASPARQSSWPSVTSTSMFAPGAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRRQPQSGGAADRRNSFTSAAAAIGWLGVSPLSATRQPRAHARVDSGSGGADRSAVPAAXXXXXXEDGTGAGSRFDEFWRQFAELTSDSGGGLSGXXXXXXXXXXXXXXXXXXXXXXXSQRSDRPATASPRDTRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQSRLDRAVLLREATIGAGRAAEHQRPHAHAPLQPPPARSVRQRRGSRGSAVNQTLTASERQXXXXXXXXXSGSLQRSRXXHRQQRWWGVARGDLGRKRRARGGLRGSTGDVGSSGSAAAHTPAQQAAATAGAADTEADIKAALHEWAEALESDAAAAAVTGASGTDATLRTGVQFSNAAHVEAPLPSRGFMWPASAGVQPPXXXXXXXXQKFNFNRRHSAGMLDEGNRGASTLSMASFSAAAAAEPRAGSVPAAYPQWAFGPAPPLVPRPPLAPTMGAAAAGARMLPHANTAFSAGAAAWRPHDTQAGAPAAAAATXXXXXXXXXXLQVPVREGSGFRXXXXXXXXXGRMAARPAVPGAAXXXXXXXXXXXXXXXXXXXXAQRMLQGQVRRWQQRAAQRSQDGLPAXXXXXARNNAWDAQVFLGEIARDLDFARYQHSGGSRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGAPLQHTRSCANEVRVTAM 1170
            MIIAVPHGAPASPIASRGSPPPLSRVTVLNSMDTTASSLGFGFGSSALSAQRGGGRHEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDLAHMRAASVPTSCGSQRSGGXXXXXXXXXXXXXXXXSAFDWHRPGSAQRSSGHHHNVGRGAGNVNREDAEGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGSRSVRHESWTLEEDQRLLAAVRMEWRDNTDWHSVALVVGTRSKVQCRDRWHNALGPALAAFQQAGVWADGDAQYRLGAPGSAQLPQQPAQAGSAATFSHSSSVFGALNIGDTNQQGAQRREQELPVDNGHFHPAEDQLILRLQGQMGNCWGVIASQLPGRTLMRAALRTRSVGSASPARQSSWPSVTSTSMFAPGAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRRQPQSGGAADRRNSFTSAAAAIGWLGVSPLSATRQPRAHARVDSGSGGADRSAVPAAXXXXXXEDGTGAGSRFDEFWRQFAELTSDSGGGLSGXXXXXXXXXXXXXXXXXXXXXXXSQRSDRPATASPRDTRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQSRLDRAVLLREATIGAGRAAEHQRPHAHAPLQPPPARSVRQRRGSRGSAVNQTLTASERQXXXXXXXXXSGSLQRSRXXHRQQRWWGVARGDLGRKRRARGGLRGSTGDVGSSGSAAAHTPAQQAAATAGAADTEADIKAALHEWAEALESDAAAAAVTGASGTDATLRTGVQFSNAAHVEAPLPSRGFMWPASAGVQPPXXXXXXXXQKFNFNRRHSAGMLDEGNRGASTLSMASFSAAAAAEPRAGSVPAAYPQWAFGPAPPLVPRPPLAPTMGAAAAGARMLPHANTAFSAGAAAWRPHDTQAGAPAAAAATXXXXXXXXXXLQVPVREGSGFRXXXXXXXXXGRMAARPAVPGAAXXXXXXXXXXXXXXXXXXXXAQRMLQGQVRRWQQRAAQRSQDGLPAXXXXXARNNAWDAQVFLGEIARDLDFARYQHSGGSRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGAPLQHTRSCANEVRVTAM
Sbjct:    1 MIIAVPHGAPASPIASRGSPPPLSRVTVLNSMDTTASSLGFGFGSSALSAQRGGGRHEGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSDLAHMRAASVPTSCGSQRSGGXXXXXXXXXXXXXXXXSAFDWHRPGSAQRSSGHHHNVGRGAGNVNREDAEGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSGSRSVRHESWTLEEDQRLLAAVRMEWRDNTDWHSVALVVGTRSKVQCRDRWHNALGPALAAFQQAGVWADGDAQYRLGAPGSAQLPQQPAQAGSAATFSHSSSVFGALNIGDTNQQGAQRREQELPVDNGHFHPAEDQLILRLQGQMGNCWGVIASQLPGRTLMRAALRTRSVGSASPARQSSWPSVTSTSMFAPGAPSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRRQPQSGGAADRRNSFTSAAAAIGWLGVSPLSATRQPRAHARVDSGSGGADRSAVPAAXXXXXXEDGTGAGSRFDEFWRQFAELTSDSGGGLSGXXXXXXXXXXXXXXXXXXXXXXXSQRSDRPATASPRDTRRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLQSRLDRAVLLREATIGAGRAAEHQRPHAHAPLQPPPARSVRQRRGSRGSAVNQTLTASERQXXXXXXXXXSGSLQRSRXXHRQQRWWGVARGDLGRKRRARGGLRGSTGDVGSSGSAAAHTPAQQAAATAGAADTEADIKAALHEWAEALESDAAAAAVTGASGTDATLRTGVQFSNAAHVEAPLPSRGFMWPASAGVQPPXXXXXXXXQKFNFNRRHSAGMLDEGNRGASTLSMASFSAAAAAEPRAGSVPAAYPQWAFGPAPPLVPRPPLAPTMGAAAAGARMLPHANTAFSAGAAAWRPHDTQAGAPAAAAATXXXXXXXXXXLQVPVREGSGFRXXXXXXXXXGRMAARPAVPGAAXXXXXXXXXXXXXXXXXXXXAQRMLQGQVRRWQQRAAQRSQDGLPAXXXXXARNNAWDAQVFLGEIARDLDFARYQHSGGSRDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGAPLQHTRSCANEVRVTAM 1170

[Close]

BLAST of jgi.p|Trimin1|354039 vs. uniprot
Match: A0A2R5GJM5_9STRA (Transcription factor MYB3R-4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJM5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 7.410e-7
Identity = 49/155 (31.61%), Postives = 69/155 (44.52%), Query Frame = 0

Query:  257 WTLEEDQRLLAAVRMEWRDNTDWHSVALVVGTRSKVQCRDRWHNALGPALAAFQQAGVWADGDAQYRLGAPGSAQLPQQPAQAGSAATFSHSSSVFGALNIGDTNQQGAQRREQELP--VDNGHFHPAEDQLILRLQGQMGNCWGVIASQLPGRT 409
            WT EED  L  AV      N  W  VA  +  R++ QC  RW   L P +    + G W+          P   ++ QQ  Q      +S  S     L  G   +Q  +R    L   V+   +   ED+LI++L+G++GN W  IA +LPGRT
Sbjct:   52 WTTEEDDILREAVARHKGKN--WKCVASALPNRTRAQCAHRWQKVLNPTI----KKGAWS----------PEEDEMLQQALQRYGCGKWSRVS----CLVPGRNGKQCRERWHNHLKPDVNKEPWSAEEDELIVKLRGELGNKWAAIARELPGRT 186

[Close]

BLAST of jgi.p|Trimin1|354039 vs. uniprot
Match: A0A6B2LNX0_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LNX0_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 3.170e-5
Identity = 42/139 (30.22%), Postives = 59/139 (42.45%), Query Frame = 0

Query:  278 DWHSVALVVGTRSKVQCRDRWHNALGPALAAFQQAGVWADGDAQ-----YRLGAPGSAQLPQQPAQAGSAATFSHSSSVFGALNIGDTNQQGAQRREQELP--VDNGHFHPAEDQLILRLQGQMGNCWGVIASQLPGRT 409
            +W  +A  V  RS+VQC  RW   L P L      G W + + +      +L  P                      S+  +   G   +Q  +R    L   +  G++ P ED+LI +LQG+MGN W  IA  LPGRT
Sbjct:   12 NWKKIASFVPGRSEVQCLHRWQKVLNPELVK----GSWTEEEDRKVRELVKLYGP-------------------KKWSLIASQLPGRIGKQCRERWTNHLDPGIRKGNWEPWEDELITKLQGEMGNKWARIAQHLPGRT 127

[Close]

BLAST of jgi.p|Trimin1|354039 vs. uniprot
Match: D8LSJ8_ECTSI (Myb-like DNA-binding protein, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ8_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.530e-5
Identity = 51/156 (32.69%), Postives = 71/156 (45.51%), Query Frame = 0

Query:  257 WTLEEDQRLL-AAVRMEWRDNTDWHSVALVVGTRSKVQCRDRWHNALGPALAAFQQAGVWADGDAQYRLGAPGSAQLPQQPAQAGSAATFSHSSSVFGALNIGDTNQQGAQRREQELP--VDNGHFHPAEDQLILRLQGQMGNCWGVIASQLPGRT 409
            W+ EED+RL  A VR        W  +A +V TR+ VQC  RW   L P L      G W+  +    +G      + +     G  A+F            G T++Q  +R    L   V  G +   ED+LI+ LQG++GN W  IA +L GRT
Sbjct:  103 WSAEEDRRLRDAVVRFS---EARWKDIASLVETRNHVQCLQRWKKVLKPGLVK----GQWSAEEDDRLVGL-----VEKGFRNWGQVASFMD----------GRTSKQCRERWCHHLDPAVRKGGYTTEEDELIIFLQGEVGNRWADIAKRLTGRT 236

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354039 vs. uniprot

BLAST of jgi.p|Trimin1|354039 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A835Z1Q7_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A2R5GJM5_9STRA	7.410e-7	31.61	Transcription factor MYB3R-4 n=1 Tax=Hondaea ferme...	[more]
A0A6B2LNX0_9EUKA	3.170e-5	30.22	Uncharacterized protein (Fragment) n=1 Tax=Arcella...	[more]
D8LSJ8_ECTSI	3.530e-5	32.69	Myb-like DNA-binding protein, putative n=2 Tax=Ect...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 253..304 e-value: 2.6E-9 score: 47.0 coord: 375..423 e-value: 0.62 score: 19.1
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 249..302 score: 9.744211
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 256..300 e-value: 3.4278E-10 score: 54.5038
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 379..409 e-value: 0.00140406 score: 35.629
None	No IPR available	GENE3D	1.10.10.60		coord: 378..412 e-value: 6.0E-6 score: 28.1
None	No IPR available	GENE3D	1.10.10.60		coord: 248..307 e-value: 7.9E-12 score: 46.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 492..507
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1149..1170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 719..747
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 866..902
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 475..508
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 120..147
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 530..555
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 579..632
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 693..806
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1111..1170
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 872..890
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 783..797
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 580..619
None	No IPR available	PANTHER	PTHR45614	MYB PROTEIN-RELATED	coord: 250..797
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 255..302 e-value: 1.9E-11 score: 43.9
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 249..306 score: 18.972097
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 252..410

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_204	contig	Contig_204:160099..170018 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354039	mRNA_17301	Tribonema minus UTEX_B_3156	mRNA	Contig_204 159934..170018 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354039|estExt_Genemark1.C_Ctg_2040024 ID=Trimin1|354039|estExt_Genemark1.C_Ctg_2040024|Name=jgi.p|Trimin1|354039|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=1171bp
MIIAVPHGAPASPIASRGSPPPLSRVTVLNSMDTTASSLGFGFGSSALSA
QRGGGRHEGAASPAAALAMPSGAARAAAAAQQRQQRLPPRPSPSQQQSQG
APLAAAAASSDLAHMRAASVPTSCGSQRSGGGGSGAGSGSSGSGSGGSAF
DWHRPGSAQRSSGHHHNVGRGAGNVNREDAEGAFADGGSGSGGGGGSGAG
SGGGGDDGGGGGGGGGGGGGGGGGGSGADDSGSGSSAGGGDRSRHGSGSR
SVRHESWTLEEDQRLLAAVRMEWRDNTDWHSVALVVGTRSKVQCRDRWHN
ALGPALAAFQQAGVWADGDAQYRLGAPGSAQLPQQPAQAGSAATFSHSSS
VFGALNIGDTNQQGAQRREQELPVDNGHFHPAEDQLILRLQGQMGNCWGV
IASQLPGRTLMRAALRTRSVGSASPARQSSWPSVTSTSMFAPGAPSPAAA
AAAAAAAQHFQEAFAPASGAASIGGGGGHGGGAGAGGSGSGSAPRRQPQS
GGAADRRNSFTSAAAAIGWLGVSPLSATRQPRAHARVDSGSGGADRSAVP
AAAAAAAAEDGTGAGSRFDEFWRQFAELTSDSGGGLSGGSGSSGGSGGGG
SASSGASFSAASQRSDRPATASPRDTRRAAGAATAAAAVAAASRRAGASA
DTPPALGGADVVAAAQGAAAALLLQSRLDRAVLLREATIGAGRAAEHQRP
HAHAPLQPPPARSVRQRRGSRGSAVNQTLTASERQQQQSSPRRGSGSLQR
SRRQHRQQRWWGVARGDLGRKRRARGGLRGSTGDVGSSGSAAAHTPAQQA
AATAGAADTEADIKAALHEWAEALESDAAAAAVTGASGTDATLRTGVQFS
NAAHVEAPLPSRGFMWPASAGVQPPPQQQQQRQQKFNFNRRHSAGMLDEG
NRGASTLSMASFSAAAAAEPRAGSVPAAYPQWAFGPAPPLVPRPPLAPTM
GAAAAGARMLPHANTAFSAGAAAWRPHDTQAGAPAAAAATAAAAGAAAAA
LQVPVREGSGFRAGTVAWTPDGRMAARPAVPGAAAAAAAAAAAVAAAAAA
AADDAQRMLQGQVRRWQQRAAQRSQDGLPAAAAAAARNNAWDAQVFLGEI
ARDLDFARYQHSGGSRDGSGDGGGSGGGRGGGGGGGGGGGGGSSGSGGGQ
RGAPLQHTRSCANEVRVTAM*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR017930	Myb_dom
IPR009057	Homeobox-like_sf