mRNA_17300 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|354038
Unique NamemRNA_17300
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z2Y9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2Y9_9STRA)

HSP 1 Score: 894 bits (2310), Expect = 0.000e+0
Identity = 526/526 (100.00%), Postives = 526/526 (100.00%), Query Frame = 1
Query:    1 MHVTSINRGFASATPDKATDRPLGSSTSPESAAAREAQGQQSRSGSIAIGGSSGGGSGTSRSGAXSXXXXXXXXXVXVDSKGSNXXXXXXXXDAGSNVVSTSGSSWDSTQSVDELEARAIDQLQPITCPATIAGQPSAPEQLPHAEPVTSTDWAHLVRTHVAARNPRSAVRVLSQMVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAETLAATGGAT 1578
            MHVTSINRGFASATPDKATDRPLGSSTSPESAAAREAQGQQSRSGSIAIGGSSGGGSGTSRSGAXSXXXXXXXXXVXVDSKGSNXXXXXXXXDAGSNVVSTSGSSWDSTQSVDELEARAIDQLQPITCPATIAGQPSAPEQLPHAEPVTSTDWAHLVRTHVAARNPRSAVRVLSQMVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAETLAATGGAT
Sbjct:    1 MHVTSINRGFASATPDKATDRPLGSSTSPESAAAREAQGQQSRSGSIAIGGSSGGGSGTSRSGAXSXXXXXXXXXVXVDSKGSNXXXXXXXXDAGSNVVSTSGSSWDSTQSVDELEARAIDQLQPITCPATIAGQPSAPEQLPHAEPVTSTDWAHLVRTHVAARNPRSAVRVLSQMVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAETLAATGGAT 526          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835ZHN3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHN3_9STRA)

HSP 1 Score: 376 bits (966), Expect = 1.040e-120
Identity = 234/350 (66.86%), Postives = 259/350 (74.00%), Query Frame = 1
Query:  502 SAVRVLSQMVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAE 1551
            +A  VL QMVD GHKP  ALFNAVL+  PRYRS+A+GA                                      XXXXXXXXXXXXXXXXXXXXXX Y++DWRRA++VF  MEAN P FADV+ WNRLL+VL  C+ PR+TL  AA MAERG AP   TYM++LQA+A LGDGAA+ESVLS M AAGE+VT    A LA GY   G M AAE ALEA L+ D  V+ R +AVT FMNACG AGDLPR+VRWL+RLPSLGLAPTPRMWNVAVSAA+K GDAAAADSLWR+AGGAAYFGL KVLVPPK GASRGWTVLV+H AEQPHA  VALDVSTCSVGMIHAALRAE
Sbjct:   42 AAALVLRQMVDGGHKPDAALFNAVLRTNPRYRSAADGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYSRDWRRALEVFRDMEANHPEFADVHMWNRLLQVLVVCTVPRTTLKVAADMAERGFAPTTATYMILLQAHAALGDGAAVESVLSSMHAAGEDVTFAARAALAKGYVYGGHMEAAEEALEAVLSSDSAVNVRTDAVTLFMNACGSAGDLPRIVRWLQRLPSLGLAPTPRMWNVAVSAAHKGGDAAAADSLWRDAGGAAYFGLYKVLVPPKGGASRGWTVLVDHAAEQPHAMSVALDVSTCSVGMIHAALRAE 391          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA)

HSP 1 Score: 351 bits (900), Expect = 2.360e-103
Identity = 199/342 (58.19%), Postives = 238/342 (69.59%), Query Frame = 1
Query:  526 MVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAE 1551
            M DSGH P    F AVL+++  +  S + AT+I +MS++ +P   TTY+LALR CR S AV QADRIL                      + AQDWRRAI+VF  +EAN PAF DV  WNRLL+ L A   P+S LAAAA MAERGVAP   T +++L+A+A LGD AA+E VLS MR AGEEVT  +LAVLA GYA  G   AAE ALEA  N       RM+ VT F+++C RAGDLPR+VRWLRRLP LGLAPTP MW VAVSAA++ GDAAAAD+LWR+AGGA YFGL KVLVPP EG S+GWTVLV +  +QPH    ALD+S+C+ G+IHAALRAE
Sbjct:    1 MADSGHNPDADTFYAVLRIRAPFMYSGDMATLIDVMSRSCLPLDITTYSLALRGCRSSDAVQQADRILASMAAARVALDGGTFAGALRTCKVAQDWRRAINVFRDIEANHPAFVDVNMWNRLLQALCASEVPQSALAAAAQMAERGVAPTRETRLVLLKAHATLGDTAAVERVLSSMRVAGEEVTFLSLAVLAKGYACGGHWEAAEEALEALFNIYSPDQLRMQTVTNFLSSCCRAGDLPRIVRWLRRLPLLGLAPTPPMWTVAVSAAHEGGDAAAADALWRDAGGAVYFGLYKVLVPPIEGVSKGWTVLVHNTVQQPHTMSAALDLSSCTAGVIHAALRAE 342          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z0G4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0G4_9STRA)

HSP 1 Score: 332 bits (852), Expect = 2.010e-101
Identity = 185/292 (63.36%), Postives = 210/292 (71.92%), Query Frame = 1
Query:  682 RACRDSAAV--HQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAE 1551
            R  R +AA     ADRIL                      R AQDWRRAIDVFF MEAN P FADV  WNRLL+V+ AC+AP STL  AALMAERGV PI  TY  +L A+AM GD  A++SVLS MRA GE+VT  TLA LA GYA+ G   AAE ALEA LN D     R+ AVT F++ACGRA DLPR+VRWLRRLPSLGLAPTPRMW+VAVSAA++ GDAAAAD++WREAGGAAYFGL KVLVP KEGA   WTV V+HPA+Q HA G ALD+S+C +G +HAALRAE
Sbjct:    8 RCMRGAAATPCKNADRILASMAAAGVAPDRHTFVGVLRACRLAQDWRRAIDVFFNMEANHPEFADVQMWNRLLKVVYACAAPESTLEVAALMAERGVVPITATYNAVLGAHAMRGDSVAVQSVLSSMRAVGEQVTFATLATLAKGYAHGGHWDAAEEALEAVLNSDRPTPVRVNAVTAFVHACGRARDLPRIVRWLRRLPSLGLAPTPRMWDVAVSAAHEGGDAAAADAMWREAGGAAYFGLYKVLVPLKEGAKSEWTVQVDHPAQQEHAPGAALDLSSCRIGAVHAALRAE 299          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z225_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z225_9STRA)

HSP 1 Score: 287 bits (734), Expect = 2.960e-86
Identity = 179/385 (46.49%), Postives = 214/385 (55.58%), Query Frame = 1
Query:  409 SAPEQLPHAEPVTSTDWAHLVRTHVAARNPRSAVRVLSQMVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCD----CHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAE 1551
            +A +QL  A   TS DWA LV  HVAARN   A   L +MV SGHKP   + +A+L+ K +Y        V+  M Q+G P   T YNLAL  C  S+AV  AD+IL                      + AQD  RA+ VF ++EA+ P   D   W  LL  LS C  P++ L AAA MAERG+ P A  Y++I +A+A LGDGAA E+ LS MR                             ALEAA           +A M A+  FM AC RA DLPR +RWLRRLPSLGLAP+PR+  V VS A+  GD AAAD+LWREAGGAAYFGL K LVPPKE   RGW VL +HP  QPHA   ALD+S C   M+H ALRAE
Sbjct:   89 TALKQLTDAGLATSQDWARLVHAHVAARNTHDAELTLGEMVASGHKPEMTVCHAILRAKAKYLHRGGATVVLRRMEQSGTPPDLTAYNLALHTCCGSSAVLHADKILADMAAMGLAPNRHTFRGMLRACKQAQDCERALAVFRSVEAHYPVDVDADMWICLLDALSVCRQPQAVLTAAARMAERGLLPTAAIYVVIAKAHAELGDGAAAETALSSMRXXXXXXXXXXXXXXXXXXXXXXXXXXXXQALEAAFRSSSTGAAATTAHMHAILAFMGACRRARDLPRALRWLRRLPSLGLAPSPRVVEVVVSVAHHAGDVAAADALWREAGGAAYFGLYKALVPPKE--RRGWIVLRDHPVRQPHAQSTALDLSNCDDVMMHVALRAE 471          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z9V3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9V3_9STRA)

HSP 1 Score: 259 bits (662), Expect = 1.070e-79
Identity = 134/201 (66.67%), Postives = 158/201 (78.61%), Query Frame = 1
Query:  949 MAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAE 1551
            MAE G  P A  Y ++L+A+A LGD AA+ES+LS MRAAGEEV P+TLA LA GY + G   AAE ALEA LN D     R+  VT F++AC RAGDLP +VRWL+RLPSLGL PTPRMW +AVS A++ GDAAAAD+LWREAGGA YFGL KVLVPP+EGAS GWT+LV+HPA+Q HA G ALD+STC+ G+IH ALRAE
Sbjct:    1 MAESGFTPTAAMYKVLLKAHAALGDTAAVESLLSSMRAAGEEVPPETLAALAKGYGHGGHWEAAEEALEAVLNSDTTTDMRVITVTAFVHACSRAGDLPHIVRWLQRLPSLGLVPTPRMWEIAVSTAHEAGDAAAADALWREAGGATYFGLYKVLVPPEEGASSGWTMLVDHPAQQEHAPGAALDLSTCTAGVIHTALRAE 201          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z121_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z121_9STRA)

HSP 1 Score: 272 bits (695), Expect = 6.740e-79
Identity = 200/393 (50.89%), Postives = 242/393 (61.58%), Query Frame = 1
Query:  385 PATIAGQPS----APEQLPHAEPVTSTDWAHLVRTHVAARNPRSAVRVLSQMVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCSVGMIHAALRAE 1551
            PA  AGQ +    A E+L  A   T  D AH V   VAA N R A+  L QMV+  HK   ++F+AVL        +  G                                       XXXXXXXXXXXXXXXXXXXXXXR AQD +RA+ VF  M+A  PAFA+   WN LLR ++  + PR TL  AA MA RGVAP A T+ L+  A+A LGD AA+E VLS +RAAG +V P+TLA LA GYA+ G M AAEGAL+A L     +  R  A+  F++AC RA DLPRV+RWLRR+P +G APT RMW+VAV+AA++ GDAAA D+LWREAGGAAYFGL K LVPPKEG+   W VL  H A+     G ALD+S+C+ G+IHAALRAE
Sbjct:    3 PAASAGQHALVFNALERLIAAGVATPKDHAHHVHACVAAHNVRGAMHALEQMVNRHHKGEMSVFHAVLHANAHCTFTKGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRMAQDGQRALVVFGKMQAEHPAFANADMWNCLLRAVATGAQPRRTLEVAAQMAGRGVAPNAHTHDLVAGAHAALGDSAAVERVLSSVRAAGGKVPPETLAALAKGYAHGGHMDAAEGALQAVLGSGGSLVVRQSAIVTFLSACRRARDLPRVLRWLRRVPKMGFAPTARMWDVAVNAAHEAGDAAATDALWREAGGAAYFGLYKALVPPKEGSGGPWRVLEGHRAQ-----GTALDLSSCTAGVIHAALRAE 390          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A836CLA8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLA8_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.600e-75
Identity = 179/387 (46.25%), Postives = 222/387 (57.36%), Query Frame = 1
Query:  409 SAPEQLPHAEPVTSTDWAHLVRTHVAARNPRSAVRVLSQMVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRD-SAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVA-PIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAAL--NCDCHVSARMEA-VTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQP-HATGVALDVSTCSVGMIHAALRAE 1551
            SA  QL  A   TS+D  HLVR HVA R+  +A   L +MVD GHKP   +F AVL  K   +    GA ++  MS  G       YN+ALR CR  +AAV QAD +L                        A D RRA+  F  M A LPAFAD   W   ++ ++    PR  LA AA MAERGV    A    L+L A+A LGD AA+E  L+    A   VT KTLA LA GYA +G + AAE  LEA    + D   +A++ A + +F+ AC RAGDLPR++RWL R+  LG    P M  +AVS A++ GDAAAAD+LWR+AGGAA FGL K L PP+EG  RGWTVLV+   +QP H    ALDVS+  +G+ HAALRAE
Sbjct:  262 SALTQLTDAGLATSSDRGHLVRVHVARRDTTNAELALGEMVDGGHKPELEVFQAVLGSKIIAKHDDGGAAILERMSSCGTLPDLRAYNMALRLCRGGAAAVQQADGVLARMALGGVAPDEVTFRWVMKACALAGDARRAVGAFRDMTARLPAFADATLWMSHMKRVARLEEPRDVLAEAARMAERGVTIQSAKLDTLVLTAHARLGDRAAVERALT---QASAPVTTKTLAELAKGYAGAGDLDAAERTLEALCESSADGATAAQLAATLVYFVLACSRAGDLPRILRWLPRVAPLGRRRLPVMVLIAVSTAHEIGDAAAADALWRDAGGAAEFGLYKALAPPEEGGGRGWTVLVDEVVQQPTHELSCALDVSSSRIGVAHAALRAE 645          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z0W7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0W7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 7.730e-64
Identity = 124/210 (59.05%), Postives = 140/210 (66.67%), Query Frame = 1
Query:  643 GVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRL 1272
            G+P    ++NLAL A     A+  ADRIL                       YA+DW RAIDVFF MEAN P FAD   WNRLL+V+ AC+AP STL  AALMAE GV PI  TY  ILQAYA LGDG AIESVL  MRAAGE+VTPKT+AVLANGYAN   MVAAE ALEA LN    ++ R+  VT F++AC RAGDLPR+VRWLRRL
Sbjct:    1 GLPPDVKSHNLALYAWCSDGAMQNADRILASMAAAGVAPDRQTFEGVLQACWYARDWHRAIDVFFDMEANHPEFADAQMWNRLLKVVYACAAPESTLEVAALMAELGVVPITATYTFILQAYARLGDGDAIESVLLSMRAAGEQVTPKTMAVLANGYANGRHMVAAEEALEAVLNSGIPINQRVRTVTAFVHACSRAGDLPRIVRWLRRL 210          
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Match: A0A835Z9W4_9STRA (PPR_long domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9W4_9STRA)

HSP 1 Score: 216 bits (551), Expect = 8.850e-63
Identity = 161/344 (46.80%), Postives = 180/344 (52.33%), Query Frame = 1
Query:  526 MVDSGHKPARALFNAVLQVKPRYRSSAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILXXXXXXXXXXXXXXXXXXXXXXRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRVLSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLSIMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEAVTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAAAADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVALDVSTCS--VGMIHAALRAE 1551
            MVD GHKP R+LFNAVL+  PR     +GATVI LMSQ GVP   TTY LAL ACR+S AV QADRIL   XXXXXXXXXXXXXXXXXXX                EAN  AF                                                                                                                VT F++ACGRAGDLP +VRWL+RLPSLGLAP+PRMW++AVS A++ GD AAAD+LWREAGGAAYFG+ KVLVPP+EG SRGWTVLV+HPA+QPH T  ALD+S CS  VGMIHAALRAE
Sbjct:    1 MVDGGHKPNRSLFNAVLRSDPRDGYDTDGATVIELMSQTGVPTNLTTYKLALHACRNSEAVQQADRILASMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEANHLAF--------------------------------------------------------------------------------------------------------------NTVTSFVDACGRAGDLPHIVRWLQRLPSLGLAPSPRMWDIAVSTAHRVGDTAAADALWREAGGAAYFGMYKVLVPPEEGTSRGWTVLVDHPAQQPHTTSTALDLSACSAQVGMIHAALRAE 234          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|354038 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A835Z2Y9_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZHN3_9STRA1.040e-12066.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z7U6_9STRA2.360e-10358.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0G4_9STRA2.010e-10163.36Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z225_9STRA2.960e-8646.49Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z9V3_9STRA1.070e-7966.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z121_9STRA6.740e-7950.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CLA8_9STRA1.600e-7546.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835Z0W7_9STRA7.730e-6459.05Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z9W4_9STRA8.850e-6346.80PPR_long domain-containing protein n=1 Tax=Tribone... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_204contigContig_204:156906..159239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|354038|estExt_Genemark1.C_Ctg_2040023
Hectar predicted targeting categoryother localisation
TranscriptId354360
TrackFilteredModels1
ProteinId354038
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354038gene_17300Tribonema minus UTEX_B_3156 geneContig_204 156906..159239 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_17300_1exon_17300_1Tribonema minus UTEX_B_3156 exonContig_204 156906..158456 +
exon_17300_2exon_17300_2Tribonema minus UTEX_B_3156 exonContig_204 159210..159239 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_17300CDS_17300Tribonema minus UTEX_B_3156 CDSContig_204 156906..158456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|354038Trimin1|354038|estExt_Genemark1.C_Ctg_2040023Tribonema minus UTEX_B_3156 polypeptideContig_204 156906..159239 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_17300 ID=mRNA_17300|Name=jgi.p|Trimin1|354038|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1581bp|location=Sequence derived from alignment at Contig_204:156906..159239+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTCACAAGCATAAATCGTGGCTTTGCGAGTGCAACACCTGACAA
GGCCACAGATCGCCCCCTTGGTTCGAGCACATCCCCAGAGTCCGCCGCAG
CACGCGAAGCACAAGGGCAGCAAAGCAGAAGTGGCAGCATCGCTATCGGT
GGCAGCAGTGGCGGCGGCAGCGGCACTAGCAGAAGCGGTGCCGGCAGCAA
TGGCAACAGCGGCAACAGCAGTGGCGTCGGCGTCGACAGCAAGGGCAGCA
ACGGCGCTAGCAGCAGCGGACGCGGCGATGCTGGCAGCAACGTCGTGAGC
ACCAGCGGCAGCAGCTGGGACAGCACTCAATCAGTTGACGAGCTAGAGGC
TCGCGCGATCGACCAGCTTCAACCCATCACGTGCCCTGCCACCATCGCTG
GTCAGCCAAGCGCTCCAGAGCAACTGCCCCATGCTGAGCCTGTCACCTCG
ACAGACTGGGCGCATCTCGTCCGCACGCATGTGGCGGCGCGCAACCCTCG
CAGTGCAGTGCGCGTCCTCAGCCAGATGGTGGACAGCGGTCACAAGCCTG
CCAGGGCGCTCTTCAATGCCGTCTTGCAGGTCAAACCCAGATACAGATCC
AGCGCAGAGGGAGCCACCGTGATAGCGCTCATGTCACAGGCCGGGGTGCC
GGCGATCTCAACGACGTACAACCTGGCACTGCGTGCATGCCGCGACAGCG
CAGCCGTGCACCAGGCCGACAGGATTCTGGCGAGCATGGCAGCTGCGCGC
GTAGCCCCCAACAGGAACACGTTCGTCGGCGTGCTGCGGGCGTGCCGGTA
TGCGCAAGACTGGCGCCGCGCAATCGACGTCTTCTTCGCCATGGAGGCGA
ATCTCCCCGCGTTCGCCGACGTGTACACGTGGAACCGCCTCCTGCGCGTG
CTATCTGCGTGCTCGGCACCACGATCCACGCTCGCTGCGGCGGCGCTAAT
GGCGGAGCGCGGGGTGGCGCCCATCGCTTTAACATACATGCTCATCTTGC
AGGCGTACGCCATGCTCGGCGACGGCGCCGCGATCGAGAGCGTGCTATCG
ATCATGCGCGCAGCGGGGGAGGAGGTGACGCCTAAGACGCTGGCCGTGCT
CGCCAACGGCTACGCGAACAGCGGGCGCATGGTGGCCGCGGAGGGGGCGC
TGGAGGCAGCGCTCAACTGCGACTGCCATGTTAGCGCGCGTATGGAGGCG
GTCACGTTCTTCATGAACGCATGCGGCCGTGCTGGCGACCTGCCGCGCGT
TGTGCGCTGGCTGCGGCGCCTGCCGTCGCTGGGGCTGGCGCCGACGCCTC
GCATGTGGAATGTCGCCGTGAGTGCGGCGTACAAGCGGGGCGACGCCGCG
GCAGCAGACTCTCTGTGGCGCGAGGCCGGCGGAGCGGCGTACTTTGGCCT
GTGCAAGGTCTTGGTGCCGCCGAAGGAGGGCGCTAGCAGGGGGTGGACGG
TGCTGGTGGAGCATCCCGCAGAGCAGCCGCATGCGACGGGCGTTGCGCTG
GACGTCAGCACCTGCAGCGTCGGCATGATACATGCTGCGCTACGTGCAGA
GACGCTGGCAGCTACCGGCGGTGCCACGTAG
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protein sequence of jgi.p|Trimin1|354038

>Trimin1|354038|estExt_Genemark1.C_Ctg_2040023 ID=Trimin1|354038|estExt_Genemark1.C_Ctg_2040023|Name=jgi.p|Trimin1|354038|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=527bp
MHVTSINRGFASATPDKATDRPLGSSTSPESAAAREAQGQQSRSGSIAIG
GSSGGGSGTSRSGAGSNGNSGNSSGVGVDSKGSNGASSSGRGDAGSNVVS
TSGSSWDSTQSVDELEARAIDQLQPITCPATIAGQPSAPEQLPHAEPVTS
TDWAHLVRTHVAARNPRSAVRVLSQMVDSGHKPARALFNAVLQVKPRYRS
SAEGATVIALMSQAGVPAISTTYNLALRACRDSAAVHQADRILASMAAAR
VAPNRNTFVGVLRACRYAQDWRRAIDVFFAMEANLPAFADVYTWNRLLRV
LSACSAPRSTLAAAALMAERGVAPIALTYMLILQAYAMLGDGAAIESVLS
IMRAAGEEVTPKTLAVLANGYANSGRMVAAEGALEAALNCDCHVSARMEA
VTFFMNACGRAGDLPRVVRWLRRLPSLGLAPTPRMWNVAVSAAYKRGDAA
AADSLWREAGGAAYFGLCKVLVPPKEGASRGWTVLVEHPAEQPHATGVAL
DVSTCSVGMIHAALRAETLAATGGAT*
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mRNA from alignment at Contig_204:156906..159239+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_17300 ID=mRNA_17300|Name=jgi.p|Trimin1|354038|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2334bp|location=Sequence derived from alignment at Contig_204:156906..159239+ (Tribonema minus UTEX_B_3156 )
ATGCACGTCACAAGCATAAATCGTGGCTTTGCGAGTGCAACACCTGACAA GGCCACAGATCGCCCCCTTGGTTCGAGCACATCCCCAGAGTCCGCCGCAG CACGCGAAGCACAAGGGCAGCAAAGCAGAAGTGGCAGCATCGCTATCGGT GGCAGCAGTGGCGGCGGCAGCGGCACTAGCAGAAGCGGTGCCGGCAGCAA TGGCAACAGCGGCAACAGCAGTGGCGTCGGCGTCGACAGCAAGGGCAGCA ACGGCGCTAGCAGCAGCGGACGCGGCGATGCTGGCAGCAACGTCGTGAGC ACCAGCGGCAGCAGCTGGGACAGCACTCAATCAGTTGACGAGCTAGAGGC TCGCGCGATCGACCAGCTTCAACCCATCACGTGCCCTGCCACCATCGCTG GTCAGCCAAGCGCTCCAGAGCAACTGCCCCATGCTGAGCCTGTCACCTCG ACAGACTGGGCGCATCTCGTCCGCACGCATGTGGCGGCGCGCAACCCTCG CAGTGCAGTGCGCGTCCTCAGCCAGATGGTGGACAGCGGTCACAAGCCTG CCAGGGCGCTCTTCAATGCCGTCTTGCAGGTCAAACCCAGATACAGATCC AGCGCAGAGGGAGCCACCGTGATAGCGCTCATGTCACAGGCCGGGGTGCC GGCGATCTCAACGACGTACAACCTGGCACTGCGTGCATGCCGCGACAGCG CAGCCGTGCACCAGGCCGACAGGATTCTGGCGAGCATGGCAGCTGCGCGC GTAGCCCCCAACAGGAACACGTTCGTCGGCGTGCTGCGGGCGTGCCGGTA TGCGCAAGACTGGCGCCGCGCAATCGACGTCTTCTTCGCCATGGAGGCGA ATCTCCCCGCGTTCGCCGACGTGTACACGTGGAACCGCCTCCTGCGCGTG CTATCTGCGTGCTCGGCACCACGATCCACGCTCGCTGCGGCGGCGCTAAT GGCGGAGCGCGGGGTGGCGCCCATCGCTTTAACATACATGCTCATCTTGC AGGCGTACGCCATGCTCGGCGACGGCGCCGCGATCGAGAGCGTGCTATCG ATCATGCGCGCAGCGGGGGAGGAGGTGACGCCTAAGACGCTGGCCGTGCT CGCCAACGGCTACGCGAACAGCGGGCGCATGGTGGCCGCGGAGGGGGCGC TGGAGGCAGCGCTCAACTGCGACTGCCATGTTAGCGCGCGTATGGAGGCG GTCACGTTCTTCATGAACGCATGCGGCCGTGCTGGCGACCTGCCGCGCGT TGTGCGCTGGCTGCGGCGCCTGCCGTCGCTGGGGCTGGCGCCGACGCCTC GCATGTGGAATGTCGCCGTGAGTGCGGCGTACAAGCGGGGCGACGCCGCG GCAGCAGACTCTCTGTGGCGCGAGGCCGGCGGAGCGGCGTACTTTGGCCT GTGCAAGGTCTTGGTGCCGCCGAAGGAGGGCGCTAGCAGGGGGTGGACGG TGCTGGTGGAGCATCCCGCAGAGCAGCCGCATGCGACGGGCGTTGCGCTG GACGTCAGCACCTGCAGCGTCGGCATGATACATGCTGCGCTACGTGCAGA GGTGCGCCGGCTGCGCACGCAGCCTGCGCCGGCGGTGCTTTACATATATA TACAGACCTCCATGCCCCACGAGCACGCGATTGCAGCAAAAGCGGTTGCT GCGGTAGTGCGGGATGTCGGCCTGCATATCTCCGCTGTGCCAACTGCGCC CGGTTTGTTCAAGCTTGCGCTGCCCCTACCACCGCCGATGCAATAGAGAG CACCCCAGGCTGTCACATCTGTGATTCATGTGCCTGTTCTTGAATGTTTC GTAGAGCAGGGAACCAGGTTGCTCCTGTGTTGTCTCTGTTTTGTGCACCC GCCATGTTGTCATGTTGACCCACTGGCACAAAGAGCATTGCAGCACACTG ACTGACGCCGACCATTGCCTTTGCATATGCAAAGCCTAGGCCAGCTGCTT AATTACTGGACAATAGTACTGCTGTGAGATGCTGCGACAGACTTCAATGC TGTGGGTGACGTACCACATCGAATGCATGTGGCAAGGATGTTCACTTTGA TTGTAGCCACATGTATGCCTTCTTAGGGTTAGTGTTAGGGTTAGGGTTAG CTTTGTCGGCAAGCACATCTGTAGGTTGTGTCAGTTGGCCGAACCCCCCC AGGAACCTCTTCAGGACCAGTATTGTCATGAGGAACAGGGCTGCGCAGGC GGAGAGGTCTGCAGAACACCATGATGCGTAAATACAGTGGCCATTGTAGC ATGAAAAGCCGCAGCGTGGCACCATCTGCTGCCCCTGAATGATGTCTGGC ACAGACGCTGGCAGCTACCGGCGGTGCCACGTAG
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Coding sequence (CDS) from alignment at Contig_204:156906..159239+

>mRNA_17300 ID=mRNA_17300|Name=jgi.p|Trimin1|354038|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1581bp|location=Sequence derived from alignment at Contig_204:156906..159239+ (Tribonema minus UTEX_B_3156 )
ATGCACGTCACAAGCATAAATCGTGGCTTTGCGAGTGCAACACCTGACAA
GGCCACAGATCGCCCCCTTGGTTCGAGCACATCCCCAGAGTCCGCCGCAG
CACGCGAAGCACAAGGGCAGCAAAGCAGAAGTGGCAGCATCGCTATCGGT
GGCAGCAGTGGCGGCGGCAGCGGCACTAGCAGAAGCGGTGCCGGCAGCAA
TGGCAACAGCGGCAACAGCAGTGGCGTCGGCGTCGACAGCAAGGGCAGCA
ACGGCGCTAGCAGCAGCGGACGCGGCGATGCTGGCAGCAACGTCGTGAGC
ACCAGCGGCAGCAGCTGGGACAGCACTCAATCAGTTGACGAGCTAGAGGC
TCGCGCGATCGACCAGCTTCAACCCATCACGTGCCCTGCCACCATCGCTG
GTCAGCCAAGCGCTCCAGAGCAACTGCCCCATGCTGAGCCTGTCACCTCG
ACAGACTGGGCGCATCTCGTCCGCACGCATGTGGCGGCGCGCAACCCTCG
CAGTGCAGTGCGCGTCCTCAGCCAGATGGTGGACAGCGGTCACAAGCCTG
CCAGGGCGCTCTTCAATGCCGTCTTGCAGGTCAAACCCAGATACAGATCC
AGCGCAGAGGGAGCCACCGTGATAGCGCTCATGTCACAGGCCGGGGTGCC
GGCGATCTCAACGACGTACAACCTGGCACTGCGTGCATGCCGCGACAGCG
CAGCCGTGCACCAGGCCGACAGGATTCTGGCGAGCATGGCAGCTGCGCGC
GTAGCCCCCAACAGGAACACGTTCGTCGGCGTGCTGCGGGCGTGCCGGTA
TGCGCAAGACTGGCGCCGCGCAATCGACGTCTTCTTCGCCATGGAGGCGA
ATCTCCCCGCGTTCGCCGACGTGTACACGTGGAACCGCCTCCTGCGCGTG
CTATCTGCGTGCTCGGCACCACGATCCACGCTCGCTGCGGCGGCGCTAAT
GGCGGAGCGCGGGGTGGCGCCCATCGCTTTAACATACATGCTCATCTTGC
AGGCGTACGCCATGCTCGGCGACGGCGCCGCGATCGAGAGCGTGCTATCG
ATCATGCGCGCAGCGGGGGAGGAGGTGACGCCTAAGACGCTGGCCGTGCT
CGCCAACGGCTACGCGAACAGCGGGCGCATGGTGGCCGCGGAGGGGGCGC
TGGAGGCAGCGCTCAACTGCGACTGCCATGTTAGCGCGCGTATGGAGGCG
GTCACGTTCTTCATGAACGCATGCGGCCGTGCTGGCGACCTGCCGCGCGT
TGTGCGCTGGCTGCGGCGCCTGCCGTCGCTGGGGCTGGCGCCGACGCCTC
GCATGTGGAATGTCGCCGTGAGTGCGGCGTACAAGCGGGGCGACGCCGCG
GCAGCAGACTCTCTGTGGCGCGAGGCCGGCGGAGCGGCGTACTTTGGCCT
GTGCAAGGTCTTGGTGCCGCCGAAGGAGGGCGCTAGCAGGGGGTGGACGG
TGCTGGTGGAGCATCCCGCAGAGCAGCCGCATGCGACGGGCGTTGCGCTG
GACGTCAGCACCTGCAGCGTCGGCATGATACATGCTGCGCTACGTGCAGA
GACGCTGGCAGCTACCGGCGGTGCCACGTAG
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