mRNA_15745 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|354009
Unique Name	mRNA_15745
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|354009 vs. uniprot
Match: A0A836CJM5_9STRA (Uncharacterized protein n=3 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJM5_9STRA)

HSP 1 Score: 1334 bits (3452), Expect = 0.000e+0
Identity = 918/918 (100.00%), Postives = 918/918 (100.00%), Query Frame = 1

Query:    1 MAGAARVISLKGPRRIDPAAPVIQFAEDLELIQSFPVHLSFVPLRQPFKSTQWEISQALKKLCPRDSPPLSLEVTLASRGPVTVTARFSDEQSLKVMARAVRHKVLNVSGALLMGDVIEKDVGKSSAAHEVAKQHLTVVLDGVPAKWVECGENGSMEPSRKLLQAMRGFGPVHAVELARSDGDGGXXXXXXXAGDNVDAVISTLSPLNVTIWTKFAMTEGFDRALAGLAGRVLRRKGVAMLAPINVSADADGYMADEQREARRLQRLAAAKEAQQAVARLEQHQRTLAKARAGHRSNVLLGPQMSETLDRAASESQRGDFNVSTTDSVVTAAARAQDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQRRLAYLLELCGEEGGSAGLGEETLTAVQQGADALQALIAAAELRAAAAAALSTVLLAALEDDWVAALDGVVDSIVPPMSWQWGGGVDALSEDVWEVMADERRALEAEAAAFGAAEALLRGLLRASEQLQEATDTLRVLESSIATDPDNRGLEQSETVVPLLQRARDTLAAARAGAPIDDGAEPVLARLAAARDAAAALRKGLAAERARRAADRAALASEVEARRRXXXXXXXXXAAAEATLRSEVATRLTGLKRAQALLREAVRLEDARRRLAALQRQRTHAAXXXXXXXXXXXXXXXXAEAGPDPSERWMPGDDEVEVVEVVEGEAKQRPPPLSPPRGPDPASRWPLISGLRDWDMAYEKGAFEARGRGWWDGYRGEDWEDEEGLEPYLLASKVVIPVREPEGEAALLNGGGXXDGDGGDXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXAGAVEEDAQALEQELRDAVLRALQKR 2754
            MAGAARVISLKGPRRIDPAAPVIQFAEDLELIQSFPVHLSFVPLRQPFKSTQWEISQALKKLCPRDSPPLSLEVTLASRGPVTVTARFSDEQSLKVMARAVRHKVLNVSGALLMGDVIEKDVGKSSAAHEVAKQHLTVVLDGVPAKWVECGENGSMEPSRKLLQAMRGFGPVHAVELARSDGDGGXXXXXXXAGDNVDAVISTLSPLNVTIWTKFAMTEGFDRALAGLAGRVLRRKGVAMLAPINVSADADGYMADEQREARRLQRLAAAKEAQQAVARLEQHQRTLAKARAGHRSNVLLGPQMSETLDRAASESQRGDFNVSTTDSVVTAAARAQDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQRRLAYLLELCGEEGGSAGLGEETLTAVQQGADALQALIAAAELRAAAAAALSTVLLAALEDDWVAALDGVVDSIVPPMSWQWGGGVDALSEDVWEVMADERRALEAEAAAFGAAEALLRGLLRASEQLQEATDTLRVLESSIATDPDNRGLEQSETVVPLLQRARDTLAAARAGAPIDDGAEPVLARLAAARDAAAALRKGLAAERARRAADRAALASEVEARRRXXXXXXXXXAAAEATLRSEVATRLTGLKRAQALLREAVRLEDARRRLAALQRQRTHAAXXXXXXXXXXXXXXXXAEAGPDPSERWMPGDDEVEVVEVVEGEAKQRPPPLSPPRGPDPASRWPLISGLRDWDMAYEKGAFEARGRGWWDGYRGEDWEDEEGLEPYLLASKVVIPVREPEGEAALLNGGGXXDGDGGDXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXAGAVEEDAQALEQELRDAVLRALQKR
Sbjct:    1 MAGAARVISLKGPRRIDPAAPVIQFAEDLELIQSFPVHLSFVPLRQPFKSTQWEISQALKKLCPRDSPPLSLEVTLASRGPVTVTARFSDEQSLKVMARAVRHKVLNVSGALLMGDVIEKDVGKSSAAHEVAKQHLTVVLDGVPAKWVECGENGSMEPSRKLLQAMRGFGPVHAVELARSDGDGGXXXXXXXAGDNVDAVISTLSPLNVTIWTKFAMTEGFDRALAGLAGRVLRRKGVAMLAPINVSADADGYMADEQREARRLQRLAAAKEAQQAVARLEQHQRTLAKARAGHRSNVLLGPQMSETLDRAASESQRGDFNVSTTDSVVTAAARAQDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQRRLAYLLELCGEEGGSAGLGEETLTAVQQGADALQALIAAAELRAAAAAALSTVLLAALEDDWVAALDGVVDSIVPPMSWQWGGGVDALSEDVWEVMADERRALEAEAAAFGAAEALLRGLLRASEQLQEATDTLRVLESSIATDPDNRGLEQSETVVPLLQRARDTLAAARAGAPIDDGAEPVLARLAAARDAAAALRKGLAAERARRAADRAALASEVEARRRXXXXXXXXXAAAEATLRSEVATRLTGLKRAQALLREAVRLEDARRRLAALQRQRTHAAXXXXXXXXXXXXXXXXAEAGPDPSERWMPGDDEVEVVEVVEGEAKQRPPPLSPPRGPDPASRWPLISGLRDWDMAYEKGAFEARGRGWWDGYRGEDWEDEEGLEPYLLASKVVIPVREPEGEAALLNGGGXXDGDGGDXXXXXXXEXXXXXXXXXXXXXXXXXXXXXXXAGAVEEDAQALEQELRDAVLRALQKR 918

[Close]

BLAST of jgi.p|Trimin1|354009 vs. uniprot
Match: A0A835YTE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTE8_9STRA)

HSP 1 Score: 910 bits (2353), Expect = 0.000e+0
Identity = 647/682 (94.87%), Postives = 647/682 (94.87%), Query Frame = 1

Query:    1 MAGAARVISLKGPRRIDPAAPVIQFAEDLELIQSFPVHLSFVPLRQPFKSTQWEISQALKKLCPRDSPPLSLEVTLASRGPVTVTARFSDEQSLKVMARAVRHKVLNVSGALLMGDVIEKDVGKSSAAHEVAKQHLTVVLDGVPAKWVECGENGSMEPSRKLLQAMRGFGPVHAVELARSDGDGGXXXXXXXAGDNVDAVISTLSPLNVTIWTKFAMTEGFDRALAGLAGRVLRRKGVAMLAPINVSADADGYMADEQREARRLQRLAAAKEAQQAVARLEQHQRTLAKARAGHRSNVLLGPQMSETLDRAASESQRGDFNVSTTDSVVTAAARAQDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQRRLAYLLELCGEEGGSAGLGEETLTAVQQGADALQALIAAAELRAAAAAALSTVLLAALEDDWVAALDGVVDSIVPPMSWQWGGGVDALSEDVWEVMADERRALEAEAAAFGAAEALLRGLLRASEQLQEATDTLRVLESSIATDPDNRGLEQSETVVPLLQRARDTLAAARAGAPIDDGAEPVLARLAAARDAAAALRKGLAAERARRAADRAALASEVEARRRXXXXXXXXXAAAEATLR 2046
            MAGAARVISLKGPRRIDPAAPVIQFAEDLELIQSFPVHLSFVPLRQPFKSTQWEISQALKKLCPRDSPPLSLEVTLASRGPVTVTARFSDEQSLKVMARAVRHKVLNVSGALLMGDVIEKDVGKSSAAHEVAKQHLTVVLDGVPAKWVECGENGSMEPSRKLLQAMRGFGPVHAVELARSDGDGGXXXXXXXAGDNVDAVISTLSPLNVTIWTKFAMTEGFDRALAGLAGRVLRRKGVAMLAPINVSADADGYMADEQREARRLQRLAAAKEAQQAVARLEQHQRTLAKARAGHRSNVLLGPQMSETLDRAASESQRGDFNVSTTDSVVTAAARAQDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQRRLAYLLELCGEEGGSAGLGEETLTAVQQGADALQALIAAAELRAAAAAALSTVLLAALEDDWVAALDGVVDSIVPPMSWQWGGGVDALSEDVWEVMADERRALEAEAAAFGAAEALLRGLLRASEQLQEATDTLRVLESSIATDPDNRGLEQSET                          PVLARLAAARDAAAALRKGLAAER       AALASEVEARR XXXXXXXX AAAEATLR
Sbjct:    1 MAGAARVISLKGPRRIDPAAPVIQFAEDLELIQSFPVHLSFVPLRQPFKSTQWEISQALKKLCPRDSPPLSLEVTLASRGPVTVTARFSDEQSLKVMARAVRHKVLNVSGALLMGDVIEKDVGKSSAAHEVAKQHLTVVLDGVPAKWVECGENGSMEPSRKLLQAMRGFGPVHAVELARSDGDGGXXXXXXXAGDNVDAVISTLSPLNVTIWTKFAMTEGFDRALAGLAGRVLRRKGVAMLAPINVSADADGYMADEQREARRLQRLAAAKEAQQAVARLEQHQRTLAKARAGHRSNVLLGPQMSETLDRAASESQRGDFNVSTTDSVVTAAARAQDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVQRRLAYLLELCGEEGGSAGLGEETLTAVQQGADALQALIAAAELRAAAAAALSTVLLAALEDDWVAALDGVVDSIVPPMSWQWGGGVDALSEDVWEVMADERRALEAEAAAFGAAEALLRGLLRASEQLQEATDTLRVLESSIATDPDNRGLEQSET--------------------------PVLARLAAARDAAAALRKGLAAERXXXXXXXAALASEVEARRXXXXXXXXXRAAAEATLR 656

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354009 vs. uniprot

BLAST of jgi.p|Trimin1|354009 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A836CJM5_9STRA	0.000e+0	100.00	Uncharacterized protein n=3 Tax=Tribonema minus Ta...	[more]
A0A835YTE8_9STRA	0.000e+0	94.87	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_203	contig	Contig_203:2924..8889 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|354009\|estExt_Genemark1.C_Ctg_2030002
Hectar predicted targeting category	other localisation
TranscriptId	354331
Track	FilteredModels1
ProteinId	354009

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354009	gene_15745	Tribonema minus UTEX_B_3156	gene	Contig_203 2924..8889 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354009	Trimin1\|354009\|estExt_Genemark1.C_Ctg_2030002	Tribonema minus UTEX_B_3156	polypeptide	Contig_203 2924..8436 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_15745_1	exon_15745_1	Tribonema minus UTEX_B_3156	exon	Contig_203 2924..3800 +
exon_15745_2	exon_15745_2	Tribonema minus UTEX_B_3156	exon	Contig_203 4033..4064 +
exon_15745_3	exon_15745_3	Tribonema minus UTEX_B_3156	exon	Contig_203 4297..4452 +
exon_15745_4	exon_15745_4	Tribonema minus UTEX_B_3156	exon	Contig_203 5104..5463 +
exon_15745_5	exon_15745_5	Tribonema minus UTEX_B_3156	exon	Contig_203 5895..6170 +
exon_15745_6	exon_15745_6	Tribonema minus UTEX_B_3156	exon	Contig_203 6546..6889 +
exon_15745_7	exon_15745_7	Tribonema minus UTEX_B_3156	exon	Contig_203 7483..7806 +
exon_15745_8	exon_15745_8	Tribonema minus UTEX_B_3156	exon	Contig_203 8049..8889 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_15745	CDS_15745	Tribonema minus UTEX_B_3156	CDS	Contig_203 2924..3800 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_15745	UTR3_15745	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_203 8437..8889 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_203:2924..8889+
coding sequence from alignment at Contig_203:2924..8889+

spliced messenger RNA

>mRNA_15745 ID=mRNA_15745|Name=jgi.p|Trimin1|354009|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3210bp|location=Sequence derived from alignment at Contig_203:2924..8889+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAGGCGCCGCCAGAGTAATCAGCTTGAAAGGGCCGCGTCGCATAGA
TCCCGCAGCCCCAGTCATCCAGTTCGCAGAGGATCTCGAGCTAATCCAGA
GCTTTCCAGTGCACTTGTCTTTCGTGCCACTGAGGCAGCCTTTCAAGAGC
ACACAGTGGGAAATCTCGCAGGCATTGAAGAAGCTCTGCCCACGCGACAG
CCCGCCTCTGTCCCTGGAGGTCACCCTAGCCAGCAGGGGTCCCGTCACCG
TCACCGCCAGGTTTTCCGATGAGCAGTCCCTCAAGGTCATGGCACGCGCC
GTGAGGCACAAAGTGCTGAATGTCTCGGGCGCGCTGCTGATGGGCGATGT
GATCGAGAAGGATGTCGGCAAGTCCAGTGCAGCCCACGAGGTCGCCAAGC
AGCACCTGACGGTGGTCCTCGACGGCGTCCCCGCAAAGTGGGTGGAGTGC
GGCGAAAACGGATCCATGGAACCCAGCCGCAAGCTCCTGCAGGCCATGCG
CGGCTTCGGCCCCGTCCACGCCGTGGAGTTGGCGCGCAGCGACGGCGACG
GCGGCGGCGGCGCCGACGGCAGCGGCGCCGGCGACAACGTCGACGCCGTC
ATCTCCACCCTGTCGCCGCTCAACGTCACAATCTGGACGAAATTTGCGAT
GACGGAGGGATTCGATAGGGCGCTGGCGGGGCTCGCGGGGCGCGTGCTGC
GGCGCAAGGGCGTGGCGATGCTCGCCCCCATCAACGTCTCGGCGGACGCG
GACGGGTACATGGCGGACGAGCAGCGCGAGGCGCGGCGGCTGCAGCGGCT
GGCGGCGGCCAAGGAGGCGCAGCAGGCGGTGGCGCGGCTGGAGCAGCACC
AGCGCACGCTGGCCAAGGCACGTGCTGGCCATAGGAGCAACGTCTTGCTA
GGACCGCAGATGTCGGAAACTCTGGACCGCGCGGCGAGCGAGTCACAGCG
CGGGGACTTCAATGTGAGCACTACTGACAGCGTCGTCACCGCCGCAGCGC
GCGCGCAAGACAAGCTGGACGCTGCGCGCGCGGCAGTGGAGCGCGGGCGT
GGCGCTAGCAAACAGGCGCAGGCGGTAGACCGCGCCCTCGCCGAGGCGCG
CGCCGCCGCCGCCGCCGCGCTGCAGGCGGTGCGCGATGCGCAGGATGCGG
CGGCGGCAGCGGCGGAGGCGGCGCGCGCGGAGGCAGCGCGGCGGCGCGAC
GCTCTTGCGCGCGCAGAAGCGGAGCCCGTCGTGCAGCAGGCGCTGGCGGC
GCTGCCGGAGCCACGGCGCGCGGAGGCGGCGGGCGGCGCGCAAGCGGCGG
CGGCGGCGGAGGCGGTGCAGCGGCGGCTCGCGTACCTGCTGGAGCTGTGC
GGCGAGGAGGGGGGGTCCGCGGGGCTCGGGGAGGAGACGCTGACGGCGGT
GCAGCAGGGCGCGGATGCGCTGCAGGCGCTGATCGCGGCGGCGGAGCTGC
GCGCCGCCGCCGCCGCAGCGCTCAGCACGGTGCTGCTGGCGGCGCTGGAG
GACGACTGGGTGGCAGCGCTCGATGGCGTCGTAGACAGCATCGTGCCGCC
CATGTCGTGGCAGTGGGGCGGCGGCGTTGACGCGCTGTCAGAGGACGTGT
GGGAGGTGATGGCGGACGAGCGGCGCGCGCTGGAGGCGGAGGCGGCGGCG
TTCGGCGCGGCGGAGGCGCTGCTGCGCGGTCTGCTGCGCGCATCCGAGCA
GCTGCAAGAGGCGACGGACACCCTCCGCGTCCTTGAGTCGTCCATCGCGA
CGGACCCCGACAACCGCGGCCTGGAGCAGTCCGAAACCGTAGTGCCGCTG
TTGCAGCGCGCGCGCGACACCCTCGCGGCAGCGCGCGCCGGCGCGCCCAT
CGACGACGGCGCGGAGCCCGTGCTGGCGCGGCTCGCGGCGGCGCGCGACG
CGGCGGCGGCGCTGCGCAAAGGGCTGGCGGCGGAGCGCGCGCGGCGCGCC
GCGGACCGCGCGGCGCTGGCGTCGGAGGTGGAGGCGCGGCGGCGGCGCGA
GGAGGACGCGGCGGCGGCGCGCGCGGCGGCGGAGGCGACACTCAGGTCGG
AGGTCGCGACGCGCCTCACCGGCCTCAAGCGAGCGCAGGCACTGCTGCGC
GAGGCCGTGCGGCTGGAGGACGCGCGCAGGCGCCTCGCGGCGCTGCAGCG
GCAGCGCACACACGCCGCCGCCGCCGCGGCCCCGGAGGCATCAACGCGCG
GCAGGAAGCGGCGGCGCGCGGAGGCGGGGCCGGACCCCAGCGAGCGCTGG
ATGCCGGGCGATGATGAAGTTGAGGTTGTTGAAGTTGTGGAAGGCGAGGC
GAAGCAGCGGCCGCCGCCGCTGTCGCCGCCGCGCGGCCCCGACCCCGCCT
CGCGATGGCCGCTCATCAGCGGCCTGCGGGACTGGGACATGGCGTACGAG
AAGGGGGCATTCGAGGCGCGCGGGCGCGGCTGGTGGGACGGCTACCGGGG
GGAGGACTGGGAAGACGAGGAGGGGCTCGAACCCTACCTGCTGGCGAGCA
AGGTTGTGATTCCGGTACGCGAGCCAGAGGGGGAGGCGGCGCTGCTCAAT
GGCGGCGGCGGCGGCGATGGCGACGGCGGCGATGGCGGCGGCAACAGCGA
CGGCGAAGGCGGCGGCGCGTCGAGCAACGGAGATGCTGCGCCGGCGGGGG
ATACGAAGGGGGGGGAAGGGGGAGCTGCAGGGGCGGTAGAGGAGGATGCG
CAGGCCCTGGAGCAGGAGCTGCGGGACGCCGTCTTGAGGGCGCTGCAGAA
GCGGTAGCCGCTCGGGCGCCGTGCCGCAGCGCGCGTCTGATTGTGTGTCT
TGAGAGTGAGCGTCGCGCGTCCGCCGGCGGGCAGCAGCAGGCTGGTGCAC
CCCCCGCTGCTGACGACGGACGGTACGCCCCCCAGTTCTGTTTTATGTGA
CTCTAGACGTGGCCAGTGGAAACACATATTGGAGTACGGCGAAGGTGTGC
ACGGCAGCATACTCGGTGCAGGGCTGCTGGTGCGGTGGCCTGCGTGCAGG
CCCTACAGGGATCCTTACGTACGGTATCTACGGTAATGTTTGGAGTGCCG
TGTACACTGTGTCTGGCTCTGCAGCATGCACAACACATTTGTGTGGCCAC
GGTCCCGAGCGTCACACAGACTTCGATGCGATCCTAGCGTATGCATGCGT
CTGCTCACTGGGCAGCACCGGGCGCTCGATGCAGTGGGAAACATCCTACC
ACACCATGGC

protein sequence of jgi.p|Trimin1|354009

>Trimin1|354009|estExt_Genemark1.C_Ctg_2030002 ID=Trimin1|354009|estExt_Genemark1.C_Ctg_2030002|Name=jgi.p|Trimin1|354009|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=919bp
MAGAARVISLKGPRRIDPAAPVIQFAEDLELIQSFPVHLSFVPLRQPFKS
TQWEISQALKKLCPRDSPPLSLEVTLASRGPVTVTARFSDEQSLKVMARA
VRHKVLNVSGALLMGDVIEKDVGKSSAAHEVAKQHLTVVLDGVPAKWVEC
GENGSMEPSRKLLQAMRGFGPVHAVELARSDGDGGGGADGSGAGDNVDAV
ISTLSPLNVTIWTKFAMTEGFDRALAGLAGRVLRRKGVAMLAPINVSADA
DGYMADEQREARRLQRLAAAKEAQQAVARLEQHQRTLAKARAGHRSNVLL
GPQMSETLDRAASESQRGDFNVSTTDSVVTAAARAQDKLDAARAAVERGR
GASKQAQAVDRALAEARAAAAAALQAVRDAQDAAAAAAEAARAEAARRRD
ALARAEAEPVVQQALAALPEPRRAEAAGGAQAAAAAEAVQRRLAYLLELC
GEEGGSAGLGEETLTAVQQGADALQALIAAAELRAAAAAALSTVLLAALE
DDWVAALDGVVDSIVPPMSWQWGGGVDALSEDVWEVMADERRALEAEAAA
FGAAEALLRGLLRASEQLQEATDTLRVLESSIATDPDNRGLEQSETVVPL
LQRARDTLAAARAGAPIDDGAEPVLARLAAARDAAAALRKGLAAERARRA
ADRAALASEVEARRRREEDAAAARAAAEATLRSEVATRLTGLKRAQALLR
EAVRLEDARRRLAALQRQRTHAAAAAAPEASTRGRKRRRAEAGPDPSERW
MPGDDEVEVVEVVEGEAKQRPPPLSPPRGPDPASRWPLISGLRDWDMAYE
KGAFEARGRGWWDGYRGEDWEDEEGLEPYLLASKVVIPVREPEGEAALLN
GGGGGDGDGGDGGGNSDGEGGGASSNGDAAPAGDTKGGEGGAAGAVEEDA
QALEQELRDAVLRALQKR*

mRNA from alignment at Contig_203:2924..8889+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_15745 ID=mRNA_15745|Name=jgi.p|Trimin1|354009|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5966bp|location=Sequence derived from alignment at Contig_203:2924..8889+ (Tribonema minus UTEX_B_3156 )
ATGGCAGGCGCCGCCAGAGTAATCAGCTTGAAAGGGCCGCGTCGCATAGA
TCCCGCAGCCCCAGTCATCCAGTTCGCAGAGGATCTCGAGCTAATCCAGA
GCTTTCCAGTGCACTTGTCTTTCGTGCCACTGAGGCAGCCTTTCAAGAGC
ACACAGTGGGAAATCTCGCAGGCATTGAAGAAGCTCTGCCCACGCGACAG
CCCGCCTCTGTCCCTGGAGGTCACCCTAGCCAGCAGGGGTCCCGTCACCG
TCACCGCCAGGTTTTCCGATGAGCAGTCCCTCAAGGTCATGGCACGCGCC
GTGAGGCACAAAGTGCTGAATGTCTCGGGCGCGCTGCTGATGGGCGATGT
GATCGAGAAGGATGTCGGCAAGTCCAGTGCAGCCCACGAGGTCGCCAAGC
AGCACCTGACGGTGGTCCTCGACGGCGTCCCCGCAAAGTGGGTGGAGTGC
GGCGAAAACGGATCCATGGAACCCAGCCGCAAGCTCCTGCAGGCCATGCG
CGGCTTCGGCCCCGTCCACGCCGTGGAGTTGGCGCGCAGCGACGGCGACG
GCGGCGGCGGCGCCGACGGCAGCGGCGCCGGCGACAACGTCGACGCCGTC
ATCTCCACCCTGTCGCCGCTCAACGTCACAATCTGGACGAAATTTGCGAT
GACGGAGGGATTCGATAGGGCGCTGGCGGGGCTCGCGGGGCGCGTGCTGC
GGCGCAAGGGCGTGGCGATGCTCGCCCCCATCAACGTCTCGGCGGACGCG
GACGGGTACATGGCGGACGAGCAGCGCGAGGCGCGGCGGCTGCAGCGGCT
GGCGGCGGCCAAGGAGGCGCAGCAGGCGGTGGCGCGGCTGGAGCAGCACC
AGCGCACGCTGGCCAAGGCACGTGCTGGTCCGCCTCTCAGCTTCCAAATA
CAGTTACATCTTGTGTGTGCGGAGGTTTTCGCTAGTTGAGAGTCTCGCAA
GGGGGCTGTTGAAGTTCGATGCATTTGCATGCTTCTGCTTGATATGACCG
CCCCCGTCTGTTGCTATGTGACAGATCTGTCTCAGTGATCTACAGGACTC
GCTGCACGGCACTTGTGATTATGTGTGGGCACGGCACATGTTGTGCTATG
GCGGCGCAGGCCATAGGAGCAACGTCTTGCTAGGACCGCAGGTCGCCTGC
CTCAGGGCTGCATTGCCATTGGTCAACTTAAAAGTCATCTGCCAATGGCC
GTTATATGCGTGCAGGACAGTCTGCACCGCATCTACAGCACCAGACCCCC
ATAATGAGACGAATGTGCGCTGGTCGCATCATGACGTGCAACTGTCATGG
TGTCAACGCATGCCTCCCAGCAGCAGTAGACTTCAAGTTCAACTTCTCTG
ATTCGCCGTGCTGCTGCGCGCAGATGTCGGAAACTCTGGACCGCGCGGCG
AGCGAGTCACAGCGCGGGGACTTCAATGTGAGCACTACTGACAGCGTCGT
CACCGCCGCAGCGCGCGCGCAAGACAAGCTGGACGCTGCGCGCGCGGCAG
TGGAGCGCGGGCGTGGCGCTAGCAAACAGGTATGCATGTATATGCCATCC
GCAGGGTGCATCGGTCAGTGCGGCTTCAGGCGCGGCAGTACATTCGTGTG
CAGAGGTGTCGCGCTGACGCATGCGCAGCGCAAGCGGGTATGCAGGTGTC
GGATACTGTGAATATGAGGTGCAGCGGTCAAATCTCATGTGGTGCGACGG
CTTACATGTGCAGTGAACCTGGTGCAGTGTGTGTACAGCGTGAGGTTGTG
TGTCGGCATGCTCTCGGCTTCACGGGCAGCATTGCTAATATGCACACTTC
AACTTCAACAGTGATTGCAGTACACTAGGTAAGCTTACCTATCATTCGGT
CACTTGCATCAAGGCCGCATATGTGTACAAGCGTGCGTGGGCTGTCACCT
GTGCTGTCCCTCTCAAGATGCTGCTGACGGTGATAGTTCCGACACACCTG
TCTGAGCAGTGCCACCCCTACACACACTGCAGCGCTTCCAAGGAGACTCT
GACTGAGACTTAGAGTCATAGTGCGCTGCTTCCCCTTATTTACCAGCTGC
CATGTCGTGCAGACCACAGGTCTGCACCTGTGGTCTGCACCACAGACCCT
AGGCATCCCGCACGCTAACACATACAGCCCCCCCCGCCCCGCCCCTCCAC
ACACGCACGGCGCACCCCCACCGCCCGCAGGCGCAGGCGGTAGACCGCGC
CCTCGCCGAGGCGCGCGCCGCCGCCGCCGCCGCGCTGCAGGCGGTGCGCG
ATGCGCAGGATGCGGCGGCGGCAGCGGCGGAGGCGGCGCGCGCGGAGGCA
GCGCGGCGGCGCGACGCTCTTGCGCGCGCAGAAGCGGAGCCCGTCGTGCA
GCAGGCGCTGGCGGCGCTGCCGGAGCCACGGCGCGCGGAGGCGGCGGGCG
GCGCGCAAGCGGCGGCGGCGGCGGAGGCGGTGCAGCGGCGGCTCGCGTAC
CTGCTGGAGCTGTGCGGCGAGGAGGGGGGGTCCGCGGGGCTCGGGGAGGA
GACGCTGACGGCGGTGCAGCAGGGCGCGGATGCGCTGCAGGTGCGGGAGG
CGGCAGACTCTCGTGGCTGTGGCTATGCGTGTGTTCGCGCATGGATATAC
ATATATATAGAAGCACATGAAGTTGTATGTGTGTGGAGTTCGTTTGTGCA
TGGGGGGAGGGGGAGGCGGGGGGGGCGTGCGTACCATGGAGGCAGGCGAT
CGAGCGCACCAAGTGCCAGGCAGGTGGCGCGGTGCTGGACGCAAGTTGGC
CCCGTGGACATGGTTACGGCGTTCGAGCCCCCCCCCCTTGCGTGTTGCCG
CAGTTTGTACGTACCTTCCTCACGGAAGCCCATGTGATGGTGGTGCAGCA
CGCCATGGTCGTAGCGCAGAAACGCCAGCAGTGCCTCTCCCCACCTGCCG
CGTCACTCGCGCATTTCCGGCGCTCGCTCTGACCCCGCGCACCGGCCGCG
CGCCGCCGCCGCCGCTCTCAGGCGCTGATCGCGGCGGCGGAGCTGCGCGC
CGCCGCCGCCGCAGCGCTCAGCACGGTGCTGCTGGCGGCGCTGGAGGACG
ACTGGGTGGCAGCGCTCGATGGCGTCGTAGACAGCATCGTGCCGCCCATG
TCGTGGCAGTGGGGCGGCGGCGTTGACGCGCTGTCAGAGGACGTGTGGGA
GGTGATGGCGGACGAGCGGCGCGCGCTGGAGGCGGAGGCGGCGGCGTTCG
GCGCGGCGGAGGCGCTGCTGCGCGGTCTGCTGCGCGCATCCGAGCAGGTG
CGCGCACGTGTGCTGCGGTGGTGCCTGGTTCTGTGGTGTGTGCAGATGTA
GGTACATGTATGTAGGTACATGAGTGCTGCTGAGCGGTGTGTGGGGGAAT
GCGCTGCTCATGTTGAAGTCCAGGCGCATGCAAGCGCAGAGGCGCAAATC
GCGCCGCAACAACCACTGTCAAACCCAGCGAGCATCGCGTTTCAGCGCTG
CTAACATTACTTCAACTATGCCGGTCCACCCCGAAAGCTGTTATCAACCC
TTGGCACCCATTCTTCGAGGCTCGAGCCATCTCTCCCAATCGCCAGCGAG
CAGGAGCACAACGTACAAGCCTTTTCCCATCCCCCCCCCCCCCTCCCCCC
CATACCCCACCTCTCGCCGCAGCTGCAAGAGGCGACGGACACCCTCCGCG
TCCTTGAGTCGTCCATCGCGACGGACCCCGACAACCGCGGCCTGGAGCAG
TCCGAAACCGTAGTGCCGCTGTTGCAGCGCGCGCGCGACACCCTCGCGGC
AGCGCGCGCCGGCGCGCCCATCGACGACGGCGCGGAGCCCGTGCTGGCGC
GGCTCGCGGCGGCGCGCGACGCGGCGGCGGCGCTGCGCAAAGGGCTGGCG
GCGGAGCGCGCGCGGCGCGCCGCGGACCGCGCGGCGCTGGCGTCGGAGGT
GGAGGCGCGGCGGCGGCGCGAGGAGGACGCGGCGGCGGCGCGCGCGGCGG
CGGAGGCGACACTCAGGTAGGGGCAGTAAGTGGGGGGTGACGATGCGTGA
TGGGATTTGTTGTTGTGGCGGCGCGGAGAAGGGGGTTGCTGGCGAGGATT
TGGGCGCTGTCGCTGCAATGGCAGGGACACTGCGCAGCGCCAGTCTCAAG
AGGTGTATGTGCTCGCTACAGGGGTTAGGGTTAGGGGTAGGGTTAGTGCA
GCCCTCACTGGGAGGGCTGCATTTGGGGCGCGTGTGTGTGTGTGCAGGCT
GGCAGCCAGTTGTGCGAGTAGAGCGGGCAGTTTCTGGCGGCGCGGCGGCT
ATGGTGACGCGCTGACGTTGCAAGATGCCGGCACAGTATCATTCTCACTG
CGCGTCCTCAGTGTTTTGACCATGTCCATGCGCTACGGGCGCGTGTCATG
AGCACGTCTGGATGTCAACTGAGCGCTCCATCTGCGCCCGGCTTGATCTG
GATCGGATGCAGCGCTGCTACGCGCAGGCAATGCTGCATTCGCTCCAAAT
GGTCGCCGCGCGCAGCTGTGGAGCACTGCCTTCAACTGCCGTACAGAACC
ATCAGTTTGCACCGCGCGCGCCATGACGTCGCGGCACCGCTCGACGCGCC
GCGCCGCAGGTCGGAGGTCGCGACGCGCCTCACCGGCCTCAAGCGAGCGC
AGGCACTGCTGCGCGAGGCCGTGCGGCTGGAGGACGCGCGCAGGCGCCTC
GCGGCGCTGCAGCGGCAGCGCACACACGCCGCCGCCGCCGCGGCCCCGGA
GGCATCAACGCGCGGCAGGAAGCGGCGGCGCGCGGAGGCGGGGCCGGACC
CCAGCGAGCGCTGGATGCCGGGCGATGATGAAGTTGAGGTTGTTGAAGTT
GTGGAAGGCGAGGCGAAGCAGCGGCCGCCGCCGCTGTCGCCGCCGCGCGG
CCCCGACCCCGCCTCGCGATGGCCGCTCATCAGGTGCGCGTGGCGCTTGT
CGATGTGAACATACGCACTCGCTGTTGCGCGTGTCCACGCCCTGCTCAAC
TGCTGACGGGTGCCAGTTATGGCCGCTGCCGGTTTCATAATCTACACTTT
GTGCCCATGATCAAACCCACATCATCAACTTGTTTTGGCACCTACCCTCA
TCATGTTTAACACTCTACACTTTGTGCCCATGATCAAACCCACATCCATC
AACTTGTTTTGGTACCTACTCTCAGCGGCCTGCGGGACTGGGACATGGCG
TACGAGAAGGGGGCATTCGAGGCGCGCGGGCGCGGCTGGTGGGACGGCTA
CCGGGGGGAGGACTGGGAAGACGAGGAGGGGCTCGAACCCTACCTGCTGG
CGAGCAAGGTTGTGATTCCGGTACGCGAGCCAGAGGGGGAGGCGGCGCTG
CTCAATGGCGGCGGCGGCGGCGATGGCGACGGCGGCGATGGCGGCGGCAA
CAGCGACGGCGAAGGCGGCGGCGCGTCGAGCAACGGAGATGCTGCGCCGG
CGGGGGATACGAAGGGGGGGGAAGGGGGAGCTGCAGGGGCGGTAGAGGAG
GATGCGCAGGCCCTGGAGCAGGAGCTGCGGGACGCCGTCTTGAGGGCGCT
GCAGAAGCGGTAGCCGCTCGGGCGCCGTGCCGCAGCGCGCGTCTGATTGT
GTGTCTTGAGAGTGAGCGTCGCGCGTCCGCCGGCGGGCAGCAGCAGGCTG
GTGCACCCCCCGCTGCTGACGACGGACGGTACGCCCCCCAGTTCTGTTTT
ATGTGACTCTAGACGTGGCCAGTGGAAACACATATTGGAGTACGGCGAAG
GTGTGCACGGCAGCATACTCGGTGCAGGGCTGCTGGTGCGGTGGCCTGCG
TGCAGGCCCTACAGGGATCCTTACGTACGGTATCTACGGTAATGTTTGGA
GTGCCGTGTACACTGTGTCTGGCTCTGCAGCATGCACAACACATTTGTGT
GGCCACGGTCCCGAGCGTCACACAGACTTCGATGCGATCCTAGCGTATGC
ATGCGTCTGCTCACTGGGCAGCACCGGGCGCTCGATGCAGTGGGAAACAT
CCTACCACACCATGGC

Coding sequence (CDS) from alignment at Contig_203:2924..8889+

>mRNA_15745 ID=mRNA_15745|Name=jgi.p|Trimin1|354009|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=2757bp|location=Sequence derived from alignment at Contig_203:2924..8889+ (Tribonema minus UTEX_B_3156 )
ATGGCAGGCGCCGCCAGAGTAATCAGCTTGAAAGGGCCGCGTCGCATAGA
TCCCGCAGCCCCAGTCATCCAGTTCGCAGAGGATCTCGAGCTAATCCAGA
GCTTTCCAGTGCACTTGTCTTTCGTGCCACTGAGGCAGCCTTTCAAGAGC
ACACAGTGGGAAATCTCGCAGGCATTGAAGAAGCTCTGCCCACGCGACAG
CCCGCCTCTGTCCCTGGAGGTCACCCTAGCCAGCAGGGGTCCCGTCACCG
TCACCGCCAGGTTTTCCGATGAGCAGTCCCTCAAGGTCATGGCACGCGCC
GTGAGGCACAAAGTGCTGAATGTCTCGGGCGCGCTGCTGATGGGCGATGT
GATCGAGAAGGATGTCGGCAAGTCCAGTGCAGCCCACGAGGTCGCCAAGC
AGCACCTGACGGTGGTCCTCGACGGCGTCCCCGCAAAGTGGGTGGAGTGC
GGCGAAAACGGATCCATGGAACCCAGCCGCAAGCTCCTGCAGGCCATGCG
CGGCTTCGGCCCCGTCCACGCCGTGGAGTTGGCGCGCAGCGACGGCGACG
GCGGCGGCGGCGCCGACGGCAGCGGCGCCGGCGACAACGTCGACGCCGTC
ATCTCCACCCTGTCGCCGCTCAACGTCACAATCTGGACGAAATTTGCGAT
GACGGAGGGATTCGATAGGGCGCTGGCGGGGCTCGCGGGGCGCGTGCTGC
GGCGCAAGGGCGTGGCGATGCTCGCCCCCATCAACGTCTCGGCGGACGCG
GACGGGTACATGGCGGACGAGCAGCGCGAGGCGCGGCGGCTGCAGCGGCT
GGCGGCGGCCAAGGAGGCGCAGCAGGCGGTGGCGCGGCTGGAGCAGCACC
AGCGCACGCTGGCCAAGGCACGTGCTGGCCATAGGAGCAACGTCTTGCTA
GGACCGCAGATGTCGGAAACTCTGGACCGCGCGGCGAGCGAGTCACAGCG
CGGGGACTTCAATGTGAGCACTACTGACAGCGTCGTCACCGCCGCAGCGC
GCGCGCAAGACAAGCTGGACGCTGCGCGCGCGGCAGTGGAGCGCGGGCGT
GGCGCTAGCAAACAGGCGCAGGCGGTAGACCGCGCCCTCGCCGAGGCGCG
CGCCGCCGCCGCCGCCGCGCTGCAGGCGGTGCGCGATGCGCAGGATGCGG
CGGCGGCAGCGGCGGAGGCGGCGCGCGCGGAGGCAGCGCGGCGGCGCGAC
GCTCTTGCGCGCGCAGAAGCGGAGCCCGTCGTGCAGCAGGCGCTGGCGGC
GCTGCCGGAGCCACGGCGCGCGGAGGCGGCGGGCGGCGCGCAAGCGGCGG
CGGCGGCGGAGGCGGTGCAGCGGCGGCTCGCGTACCTGCTGGAGCTGTGC
GGCGAGGAGGGGGGGTCCGCGGGGCTCGGGGAGGAGACGCTGACGGCGGT
GCAGCAGGGCGCGGATGCGCTGCAGGCGCTGATCGCGGCGGCGGAGCTGC
GCGCCGCCGCCGCCGCAGCGCTCAGCACGGTGCTGCTGGCGGCGCTGGAG
GACGACTGGGTGGCAGCGCTCGATGGCGTCGTAGACAGCATCGTGCCGCC
CATGTCGTGGCAGTGGGGCGGCGGCGTTGACGCGCTGTCAGAGGACGTGT
GGGAGGTGATGGCGGACGAGCGGCGCGCGCTGGAGGCGGAGGCGGCGGCG
TTCGGCGCGGCGGAGGCGCTGCTGCGCGGTCTGCTGCGCGCATCCGAGCA
GCTGCAAGAGGCGACGGACACCCTCCGCGTCCTTGAGTCGTCCATCGCGA
CGGACCCCGACAACCGCGGCCTGGAGCAGTCCGAAACCGTAGTGCCGCTG
TTGCAGCGCGCGCGCGACACCCTCGCGGCAGCGCGCGCCGGCGCGCCCAT
CGACGACGGCGCGGAGCCCGTGCTGGCGCGGCTCGCGGCGGCGCGCGACG
CGGCGGCGGCGCTGCGCAAAGGGCTGGCGGCGGAGCGCGCGCGGCGCGCC
GCGGACCGCGCGGCGCTGGCGTCGGAGGTGGAGGCGCGGCGGCGGCGCGA
GGAGGACGCGGCGGCGGCGCGCGCGGCGGCGGAGGCGACACTCAGGTCGG
AGGTCGCGACGCGCCTCACCGGCCTCAAGCGAGCGCAGGCACTGCTGCGC
GAGGCCGTGCGGCTGGAGGACGCGCGCAGGCGCCTCGCGGCGCTGCAGCG
GCAGCGCACACACGCCGCCGCCGCCGCGGCCCCGGAGGCATCAACGCGCG
GCAGGAAGCGGCGGCGCGCGGAGGCGGGGCCGGACCCCAGCGAGCGCTGG
ATGCCGGGCGATGATGAAGTTGAGGTTGTTGAAGTTGTGGAAGGCGAGGC
GAAGCAGCGGCCGCCGCCGCTGTCGCCGCCGCGCGGCCCCGACCCCGCCT
CGCGATGGCCGCTCATCAGCGGCCTGCGGGACTGGGACATGGCGTACGAG
AAGGGGGCATTCGAGGCGCGCGGGCGCGGCTGGTGGGACGGCTACCGGGG
GGAGGACTGGGAAGACGAGGAGGGGCTCGAACCCTACCTGCTGGCGAGCA
AGGTTGTGATTCCGGTACGCGAGCCAGAGGGGGAGGCGGCGCTGCTCAAT
GGCGGCGGCGGCGGCGATGGCGACGGCGGCGATGGCGGCGGCAACAGCGA
CGGCGAAGGCGGCGGCGCGTCGAGCAACGGAGATGCTGCGCCGGCGGGGG
ATACGAAGGGGGGGGAAGGGGGAGCTGCAGGGGCGGTAGAGGAGGATGCG
CAGGCCCTGGAGCAGGAGCTGCGGGACGCCGTCTTGAGGGCGCTGCAGAA
GCGGTAG