mRNA_15749 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|179879
Unique NamemRNA_15749
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A835Z2M9_9STRA (4-diphosphocytidyl-2c-methyl-d-erythritol kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2M9_9STRA)

HSP 1 Score: 671 bits (1732), Expect = 2.790e-244
Identity = 323/323 (100.00%), Postives = 323/323 (100.00%), Query Frame = 1
Query:    1 MQFSTASQDLTDVRTGAHQQWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEGATYLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDPADRDWPIVFTRKWGCNIWRTEFINRPEGEHLWYRQERPYGAEHK 969
            MQFSTASQDLTDVRTGAHQQWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEGATYLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDPADRDWPIVFTRKWGCNIWRTEFINRPEGEHLWYRQERPYGAEHK
Sbjct:    1 MQFSTASQDLTDVRTGAHQQWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEGATYLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDPADRDWPIVFTRKWGCNIWRTEFINRPEGEHLWYRQERPYGAEHK 323          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: D7G6C7_ECTSI (4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6C7_ECTSI)

HSP 1 Score: 370 bits (950), Expect = 2.020e-124
Identity = 177/296 (59.80%), Postives = 222/296 (75.00%), Query Frame = 1
Query:   58 QWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEGATYLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDPAD-RDWPIVFTRKWGCNIWRTEFINRPEGEHLWYRQ 942
            +WD   FSPAKINLFLRI+GKRPD +H+LASLFQTVGFGD L+F KLPE A AD F C    VP+D SNLV++ALDLFR +T + QF+ V+L K IP +AG+GGGS +AAT LFAAN+L G PA+ E L  WS +LGSDITFFLS+GTCYCTGRGEVLHPQ  +    +VWL+KP +GLSTP+VF+HLDY++LS  +P  LLK F ++G+  A Y+NDLE PAFKA+P L+ MK+++Q  GF+ VLMSGSG+T+F +G P     W   F  KWG  +  T FINRP  ++ WY +
Sbjct:   83 EWDANFFSPAKINLFLRILGKRPDGFHDLASLFQTVGFGDKLFFRKLPESAVADTFNCNMEGVPTDGSNLVLRALDLFRKRTSSQQFYEVYLSKRIPPEAGLGGGSANAATALFAANKLAGHPASLEDLQLWSAELGSDITFFLSTGTCYCTGRGEVLHPQEPLPQ-TRVWLVKPNKGLSTPVVFRHLDYDQLSRIEPAGLLKQFIEEGLAEADYVNDLELPAFKAMPSLQTMKEELQTLGFEHVLMSGSGSTIFCIGSPTHGSSWTKEFAEKWGAMVVDTHFINRPVEDNAWYAE 377          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A7S4VPB6_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPB6_9STRA)

HSP 1 Score: 322 bits (824), Expect = 3.690e-105
Identity = 167/302 (55.30%), Postives = 216/302 (71.52%), Query Frame = 1
Query:   49 AHQQWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTG-THQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEGA---TYLNDLEPPAFKALPMLKQMKQDM-QAAGFKVVLMSGSGTTLFALGDPADRD-WPIVFTRKWGCNIWRTEFINRPEGEHLWY 936
            A ++  L L SP KINLFLRI+ KRPDN+H+LASLFQTV FGD L  + L   A  D FTC    VP+D SNLV++AL L R KTG T  FF+ +L K +PAQAG+GGGSG+AAT +  ANEL GCPAT EQLV WSG+LGSDITFFLS G+ YCTGRGE++ P   + A  K++++KP+ GLSTP VF  LDYN LS++DP ELLK F + G++      Y+NDLE PAF  LP LK +K+++    GF+ V+MSGSGT++F +G+P D++ +   F  + G N++ TEFINR EG  +W+
Sbjct:   90 ATKEEQLVLHSPCKINLFLRILRKRPDNFHDLASLFQTVKFGDTLELSLLDSAATKDEFTCNMEGVPTDDSNLVIRALKLMREKTGKTDVFFKANLIKCVPAQAGLGGGSGNAATAMHGANELMGCPATQEQLVEWSGELGSDITFFLSRGSAYCTGRGEIMTPVEPLPAGTKLYIVKPDIGLSTPQVFGALDYNALSTKDPEELLKRFLENGVDAGGHDAYVNDLEQPAFDCLPELKALKEELVNVEGFQHVMMSGSGTSIFCIGEPKDKEAFMKEFDEREGINVFPTEFINREEG--VWF 389          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A7S3YEW3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEW3_HETAK)

HSP 1 Score: 317 bits (813), Expect = 3.500e-104
Identity = 159/247 (64.37%), Postives = 187/247 (75.71%), Query Frame = 1
Query:   58 QWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQ---DKGIEGATYLNDLEPPAFKALPMLKQMKQDMQAAGFKV 789
            QWDLELFSP KINLFLRI+ KR D +H+LASLFQTVGFGD + F KL  +A  D  TC  P+VP D SNLV+KALDL+R +TG  QFFRV LDK +PAQ G+GGGSG+ AT  FAANEL G PA    L AWS +LGSDITFF S GTCYCTGRGEVLHPQ  +      +L+KPEEGLSTP+VFK+LDY  LS  DP E+L +F    D+G+ GATY+NDLEPPAFK +P L ++K D++AAGF V
Sbjct:   97 QWDLELFSPCKINLFLRIIRKREDGFHDLASLFQTVGFGDTMRFKKLDGEACEDELTCNMPDVPVDSSNLVIKALDLWRERTGVRQFFRVDLDKRVPAQGGLGGGSGNCATAFFAANELCGAPAALGDLEAWSAELGSDITFFFSRGTCYCTGRGEVLHPQAPLPP-SVCYLVKPEEGLSTPLVFKNLDYALLSPADPEEVLATFTGGGDRGLYGATYVNDLEPPAFKVMPALAELKADLRAAGFPV 342          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A7S2LLF5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LLF5_9STRA)

HSP 1 Score: 316 bits (810), Expect = 2.310e-103
Identity = 162/293 (55.29%), Postives = 210/293 (71.67%), Query Frame = 1
Query:   55 QQWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPED--ARADAFTCTAPNVPSDKSNLVMKALDLFRAKTG-THQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGI---EGATYLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDPADRD-WPIVFTRKWGCNIWRTEFINR 912
            + WDL LFSPAKIN+FLRI+ KR D +H+LASLFQT+GFGD L+   L +D  A+ D  TC    VP+DKSNLVM+A+DL R  TG T +FF+  L K +P QAG+GGGSG+AA  L+ ANEL G PAT EQLV WSGDLGSDITFFLS GT YCTGRGE++ P   + A + V+++KP+ GLSTP VFK LDY+ LS+ DP E+L  F  +G+     + ++NDLEPPAFK +P LK++K D+ + GF  V+MSGSGT++F LG P D + +  +   +    ++ TEFINR
Sbjct:   57 ETWDLSLFSPAKINIFLRIIRKREDGFHDLASLFQTIGFGDYLHLKLLDDDEEAKEDILTCNMEGVPTDKSNLVMRAIDLVRQNTGITDKFFKCDLVKHVPHQAGLGGGSGNAAAALYGANELLGRPATLEQLVEWSGDLGSDITFFLSEGTAYCTGRGEIMTPVDPLPAGQTVYIVKPDIGLSTPSVFKALDYDLLSTLDPEEILNVFMTEGVTTSNQSVFVNDLEPPAFKVVPELKELKDDLISCGFDTVMMSGSGTSIFCLGKPGDEEKFEELIGSRDDVQVYPTEFINR 349          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: W7UAJ0_9STRA (4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7UAJ0_9STRA)

HSP 1 Score: 309 bits (791), Expect = 3.160e-100
Identity = 164/307 (53.42%), Postives = 208/307 (67.75%), Query Frame = 1
Query:   61 WDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEG-----ATYLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDPADRDWP---------IVFTRKWGCNIWRTEFINRPEGE-HLWY 936
            +DLELFSPAK+NLFLRI+ +R D YHELASLFQTV FGD L    LP  A  D F+ +  ++ +D+SNLV++ALDLFR KTG  Q F V+L+K  P QAG+GGGS +AATTLFAAN+L G PAT E+L+ WS +LGSDITFFLS GT YCTGRGE+L P P + +  K++++KP  GLSTP VFK LD + L+ EDP +LL +F      G     + Y+NDLEPPAF+ +P LK +K+ + A GF  V+MSGSGT +FA+  PA    P           F R+   +IW T F NRP  +   WY
Sbjct:   77 FDLELFSPAKVNLFLRIIRRREDGYHELASLFQTVAFGDTLLLKVLPAIAVQDEFSSSYTSLVTDQSNLVLRALDLFREKTGKTQRFEVYLEKRTPVQAGLGGGSSNAATTLFAANQLLGTPATDEELIEWSKELGSDITFFLSKGTAYCTGRGELLEPVPPLPSSIKLYVVKPPVGLSTPAVFKALDLDALNGEDPRDLLAAFTQHLSRGELGPASMYINDLEPPAFQCVPRLKAIKEALLARGFDCVMMSGSGTAIFAMA-PAPSSLPSSAGLSFDAAAFAREMEVDIWATTFTNRPSDDPKAWY 382          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A7S2CPU7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CPU7_9STRA)

HSP 1 Score: 305 bits (780), Expect = 1.430e-99
Identity = 154/301 (51.16%), Postives = 208/301 (69.10%), Query Frame = 1
Query:   49 AHQQWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLK--SFQDKGIEGATYLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDPADRDWPIVFTRK--WGCNIWRTEFINRPEGEHLWYR 939
            A + +DLEL SP+KINLFLR+  +R D +H+LASLFQ +   D + F+KL  DA  D F C    VP+DKSNLV++A D+FR ++G  QFFR  LDK +PAQAG+GGGSG+AAT L+ AN L G PAT E+L+ WS  LGSD TFF+S GT YCTGRGE+L P P + A  +++++KP+ GLSTP VF++LD +  S++DPL LL+  + Q  G++   Y+NDLEPPAF  +  L+ +K+ + A GF  V MSGSGT+LF +G P    W    ++   W   ++ TEF+NRP GE  WY+
Sbjct:   20 ASESFDLELRSPSKINLFLRVTARRDDGFHDLASLFQAIALSDRISFSKLDADAVDDVFECNMEGVPTDKSNLVLRAFDVFRERSGVQQFFRCRLDKTVPAQAGLGGGSGNAATALYGANVLCGQPATHEELLEWSKTLGSDATFFMSEGTAYCTGRGEILTPVPPLPA-TRLFVVKPDVGLSTPSVFQNLDLSTRSTQDPLALLELHTSQKPGVD--KYVNDLEPPAFALVQPLRVLKERLMALGFDSVAMSGSGTSLFCMGTPPAAGWQDGLSKDLPWRVTVYETEFLNRPSGE--WYK 315          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A7S2URY2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2URY2_9STRA)

HSP 1 Score: 304 bits (778), Expect = 2.900e-98
Identity = 165/316 (52.22%), Postives = 219/316 (69.30%), Query Frame = 1
Query:   55 QQWDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPED-ARADAFTCTAPNVPSDKSNLVMKALDLFRAKTG-THQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLH-PQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSF-QDKGIEGAT-----------YLNDLEPPAFKALPMLKQMKQDM-QAAGFKVVLMSGSGTTLFALGDPADRDWPIVFTRKWGCN----IWRTEFINRPEGEHLWYRQ 942
            + +DL LFSP KINLFLRI+ KR D +H+LASLFQTVGFGD L+   L  D   +D F C    VP+D+SNLV++AL L R KTG ++QFFR +L K +PAQAG+GGGSG+AA  L+ ANEL G PAT EQLV WSG LGSDITFFLS GT YCTGRGE++   +P + A  K+ ++KP+ GLSTP VF  +DY++LS  DP ELL+ F    G EG++           Y+NDLE PAF+ +P LK++K+ + +  GF+ VLMSGSGT++F +G+P D+D    F +++G      +  TEFINR  G+ +W+ +
Sbjct:   71 EDYDLSLFSPCKINLFLRIIRKREDGFHDLASLFQTVGFGDMLHLKLLGADETTSDEFDCNMEGVPTDQSNLVLRALTLLREKTGLSNQFFRANLVKCVPAQAGLGGGSGNAAAALYGANELLGRPATQEQLVEWSGALGSDITFFLSRGTAYCTGRGEIMSLVEPPLPAGTKLCIVKPQLGLSTPQVFGAMDYDKLSDADPQELLQQFTSSNGPEGSSMTSVADVPDSCYVNDLEFPAFQCVPELKELKEQLLKVEGFQHVLMSGSGTSIFCMGEPTDKD---AFQKEFGSRDDLLVVFTEFINRGPGDGVWFEE 383          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A7S4J8U2_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J8U2_9STRA)

HSP 1 Score: 300 bits (769), Expect = 5.000e-97
Identity = 162/315 (51.43%), Postives = 211/315 (66.98%), Query Frame = 1
Query:   61 WDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPED------------ARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQF-FRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHP--QP-NIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEGA---TYLNDLEPPAFKALPMLKQMKQDM-QAAGFKVVLMSGSGTTLFALGDPADR-DWPIVFTRKWGCNIWRTEFINRPEGEHLWYRQ 942
            +DL LFSP KINLFLRI+ KRPD +H+LASLFQTVGFGD LY  KLP+D            +  D F C    VP+D++NLV++ALDL R KTG     F  +L K +PAQAG+GGGSG+AA  +  ANEL G PAT EQLV WS DLGSDITFFLS GT YCTGRGE++ P   P +     K+ ++KP+ GLSTP VF  LDY+ LS EDP ELL  F + G++      Y+NDLE PAF  LP L+++K+++ +  GF  V+MSGSGT++F +G+P D   +   F  + G +++ TEFI+R +G   W+ +
Sbjct:   63 YDLALFSPCKINLFLRIIRKRPDGFHDLASLFQTVGFGDTLYLTKLPDDEXXXXXXAVAKTSDGDKFECNMEGVPTDRTNLVLRALDLVREKTGNADARFEANLVKRVPAQAGLGGGSGNAAAAMHGANELLGRPATHEQLVEWSADLGSDITFFLSHGTAYCTGRGEIMTPINAPFDFTGETKLTIVKPDIGLSTPAVFGALDYDALSDEDPEELLSRFLEYGVDAGGDDAYVNDLEQPAFDCLPELRKLKEELLEVKGFDHVMMSGSGTSIFCMGEPDDEAGFMKEFGDREGLSVFPTEFISREKGVGCWFEE 377          
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Match: A0A7S4C8S3_9EUGL (4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8S3_9EUGL)

HSP 1 Score: 303 bits (777), Expect = 5.720e-97
Identity = 162/305 (53.11%), Postives = 207/305 (67.87%), Query Frame = 1
Query:   61 WDLELFSPAKINLFLRIMGKRPDNYHELASLFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAKTGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVAWSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLSTPMVFKHLDYNELSSEDPLELLKSFQDKGIEGAT-----YLNDLEPPAFKALPMLKQMKQDMQAAGFKVVLMSGSGTTLFALGDP--ADRDWPIV--FTRKWGCNIWRTEFINRPE----GEHLWY 936
            WDLE FSP+KINLFLRI+ +R D YH+LASLFQ +  GD + F  LP+DA  D F C  P VP+D++NLV++ +DL R KTG  +  RV L+K +PAQAG+GGGSG+AATTL+A NEL G PAT EQLV WSG LGSDITFFLS GT YCTGRGE+L P P +   ++++L KP+ GLSTP VFK LDY  LS  DP +LL  FQ    + A      Y+NDLEPPAF+ +P L  +K+++   GF  VLMSGSGT++ A+G+P  A     +V  F  +     ++ +F+ R E    G  LWY
Sbjct:  171 WDLEAFSPSKINLFLRIIRRREDGYHDLASLFQAINLGDRVSFKLLPDDAADDEFECNMPGVPTDRTNLVLRTIDLMREKTGIEKKLRVRLEKKVPAQAGLGGGSGNAATTLWAVNELYGRPATLEQLVEWSGALGSDITFFLSGGTAYCTGRGEILTPLPPLPP-QRIYLFKPDIGLSTPAVFKALDYEALSPADPEDLLAQFQAAQPDVAAASRDIYVNDLEPPAFRLVPELAAIKEELLELGFPHVLMSGSGTSIVAIGEPMGAKSGAEVVADFDARPDMKAFQADFMWRQEDDADGNPLWY 474          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|179879 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z2M9_9STRA2.790e-244100.004-diphosphocytidyl-2c-methyl-d-erythritol kinase n... [more]
D7G6C7_ECTSI2.020e-12459.804-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol ... [more]
A0A7S4VPB6_9STRA3.690e-10555.30Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S3YEW3_HETAK3.500e-10464.37Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2LLF5_9STRA2.310e-10355.29Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
W7UAJ0_9STRA3.160e-10053.424-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol ... [more]
A0A7S2CPU7_9STRA1.430e-9951.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2URY2_9STRA2.900e-9852.22Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S4J8U2_9STRA5.000e-9751.43Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S4C8S3_9EUGL5.720e-9753.114-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_203contigContig_203:31609..36013 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|179879|e_gw1.203.28.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00002,RC01439
KEGG ReactionR05634
KEGG ModuleM00096
KEGG Pathwayko00900,ko01100,ko01110,ko01130,map00900,map01100,map01110,map01130
KEGG koko:K00919
EC2.7.1.148
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009507,GO:0009509,GO:0009536,GO:0009987,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044424,GO:0044444,GO:0044464,GO:0050515
Preferred nameCMK
Description4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity
COG categoryI
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1947@1|root,2QT9C@2759|Eukaryota
Evalue3.32e-125
Seed ortholog2880.D7G6C7
Hectar predicted targeting categoryother localisation
Ec32 ortholog description4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor
Ec32 orthologEc-10_001370.1
TranscriptId180201
TrackFilteredModels1
ProteinId179879
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179879gene_15749Tribonema minus UTEX_B_3156 geneContig_203 31609..36013 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|179879Trimin1|179879|e_gw1.203.28.1Tribonema minus UTEX_B_3156 polypeptideContig_203 31609..36013 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15749_6exon_15749_6Tribonema minus UTEX_B_3156 exonContig_203 31609..31794 -
exon_15749_5exon_15749_5Tribonema minus UTEX_B_3156 exonContig_203 32831..32935 -
exon_15749_4exon_15749_4Tribonema minus UTEX_B_3156 exonContig_203 33597..33717 -
exon_15749_3exon_15749_3Tribonema minus UTEX_B_3156 exonContig_203 34757..34992 -
exon_15749_2exon_15749_2Tribonema minus UTEX_B_3156 exonContig_203 35320..35484 -
exon_15749_1exon_15749_1Tribonema minus UTEX_B_3156 exonContig_203 35855..36013 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15749CDS_15749Tribonema minus UTEX_B_3156 CDSContig_203 35855..36013 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15749 ID=mRNA_15749|Name=jgi.p|Trimin1|179879|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=972bp|location=Sequence derived from alignment at Contig_203:31609..36013- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGTTCTCAACGGCTTCGCAGGACCTCACGGACGTGAGGACGGGCGC
TCACCAGCAGTGGGACCTGGAGCTGTTCAGCCCTGCCAAGATCAACCTGT
TCCTGCGCATCATGGGCAAGAGGCCGGACAATTACCACGAGCTGGCCAGC
CTGTTTCAGACCGTAGGATTTGGCGACAACCTGTACTTTGCGAAACTGCC
AGAGGACGCGCGCGCGGACGCATTTACGTGCACCGCGCCCAATGTCCCTT
CCGATAAGAGCAACCTCGTCATGAAGGCGCTGGACCTGTTCCGCGCCAAG
ACGGGCACGCACCAGTTCTTCAGGGTGCACCTGGACAAGCTCATACCGGC
GCAGGCGGGCATGGGCGGCGGCTCGGGCGACGCGGCGACGACGCTGTTCG
CGGCGAACGAACTCACGGGGTGCCCCGCGACCCCGGAGCAGCTGGTCGCG
TGGTCGGGGGACCTGGGGAGCGACATTACGTTTTTCCTGAGCAGCGGGAC
GTGCTACTGCACGGGGCGCGGCGAGGTGCTGCACCCGCAGCCCAACATTC
AGGCGTACAAGAAAGTGTGGCTTATTAAGCCCGAGGAGGGCCTCAGCACG
CCCATGGTGTTTAAGCACCTGGACTACAATGAACTGTCCTCAGAAGACCC
CCTGGAGCTGCTCAAGAGCTTCCAAGACAAGGGTATCGAGGGCGCCACGT
ACCTCAACGACCTGGAGCCGCCGGCGTTCAAGGCCCTGCCCATGCTCAAG
CAGATGAAGCAGGACATGCAGGCAGCCGGCTTCAAGGTGGTTCTCATGTC
GGGCAGCGGCACCACACTCTTCGCGCTCGGCGACCCGGCCGACAGGGACT
GGCCCATTGTGTTCACGCGCAAGTGGGGCTGCAACATCTGGCGCACCGAG
TTCATTAACCGCCCCGAGGGCGAGCACCTGTGGTACCGGCAGGAGCGGCC
GTACGGCGCAGAGCACAAATAA
back to top

protein sequence of jgi.p|Trimin1|179879

>Trimin1|179879|e_gw1.203.28.1 ID=Trimin1|179879|e_gw1.203.28.1|Name=jgi.p|Trimin1|179879|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=324bp
MQFSTASQDLTDVRTGAHQQWDLELFSPAKINLFLRIMGKRPDNYHELAS
LFQTVGFGDNLYFAKLPEDARADAFTCTAPNVPSDKSNLVMKALDLFRAK
TGTHQFFRVHLDKLIPAQAGMGGGSGDAATTLFAANELTGCPATPEQLVA
WSGDLGSDITFFLSSGTCYCTGRGEVLHPQPNIQAYKKVWLIKPEEGLST
PMVFKHLDYNELSSEDPLELLKSFQDKGIEGATYLNDLEPPAFKALPMLK
QMKQDMQAAGFKVVLMSGSGTTLFALGDPADRDWPIVFTRKWGCNIWRTE
FINRPEGEHLWYRQERPYGAEHK*
back to top

mRNA from alignment at Contig_203:31609..36013-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15749 ID=mRNA_15749|Name=jgi.p|Trimin1|179879|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4405bp|location=Sequence derived from alignment at Contig_203:31609..36013- (Tribonema minus UTEX_B_3156 )
ATGCAGTTCTCAACGGCTTCGCAGGACCTCACGGACGTGAGGACGGGCGC TCACCAGCAGTGGGACCTGGAGCTGTTCAGCCCTGCCAAGATCAACCTGT TCCTGCGCATCATGGGCAAGAGGCCGGACAATTACCACGAGCTGGCCAGC CTGTTTCAGGTGCCTTGGTGCAGCTTTCAGCGTGTACGCAACGTCCGCTG CTGCTGTCTGCATGTAGCATCAACATCACCTGCTGTCTCACTTTCATTGC CAAGTGCATGCATGTCAACTGTAGCCGGCTCATGCACAGACCCAGAAACT GCTCTGTGGCAACAAAGTAGATGCCTGGTCTCCCGAACATGGTGCAGTCA ACAGTCTCCAGACATTAGAGCTGAGGTTGCTCACAGGCTCACTGCTCGAG GCTCTGATGAATTCAATCGTTGAAACCTTTCACGCCGATACATGCGACAC GCTGTGCACCCACATCGCGCTCAGCGCCGCATCCTCCGCCGCCCGTGCCC GCCCCCCCCCTGTGCCCCGTCTCTCGCAGACCGTAGGATTTGGCGACAAC CTGTACTTTGCGAAACTGCCAGAGGACGCGCGCGCGGACGCATTTACGTG CACCGCGCCCAATGTCCCTTCCGATAAGAGCAACCTCGTCATGAAGGCGC TGGACCTGTTCCGCGCCAAGACGGGCACGCACCAGTTCTTCAGGGTGAGC GGGCCGGACCATGTGACGCGCCCCGGCGCGGCCGGTGGAGCTGTATGTGC ATGCGGCTGGCTGTTGATCGGGGGCCCGCGACAGGCTGCGTCGCCTGCGC TCGTCGCTGCGCATGCGTTCATGCGTTCATGCGCGCATACGTGCATGCAT GCATGTATGCGGTGTGCATATATATATACACATACGCGCCTCTATGTACC TACCCATGAACATACACGCACGTGCGTCCGGCGCCCCGCATCAGTTCCAA GCGCCCCCTTCATACGCCCGACGCCACCCCCCTTGACCTGACCCCCCCGC CCCGCCGCCGCCGCGCCGCAGGTGCACCTGGACAAGCTCATACCGGCGCA GGCGGGCATGGGCGGCGGCTCGGGCGACGCGGCGACGACGCTGTTCGCGG CGAACGAACTCACGGGGTGCCCCGCGACCCCGGAGCAGCTGGTCGCGTGG TCGGGGGACCTGGGGAGCGACATTACGTTTTTCCTGAGCAGCGGGACGTG CTACTGCACGGGGCGCGGCGAGGTGCTGCACCCGCAGCCCAACATTCAGG CGTACAAGTGAGTGAGTGAGTGAGTGAGTCGCTGAGTCTGACTCTGAGTA TGATCGAGACGTGCCACCGCACGGGGCGCGGCGAGGTGCTGCACCCGCAG CCCAACATGCAGGCGTACAAGTGAGTGAGCGAGCGAGCCGCTGGGTCTGA GTCTGAGTGTGCGGTTTGGAAGAGTCTGTCTGAGGGAGAGTGACGCTGCA GGTGGGTCAGGGGCGCTCGTGTGGACAGGGGGGGGGCAAGGGGCTAGGGA GGGTACTTTAGGATTAATGGTGAGGGTGTGTGGCGGGGGTGTGTGTGTGA TGTCGAGAGGGCAACATGTGTTTTTGAGAGGGGGGCATGAGAGGGGGCAT GCAAGGTTGGTGATGAGGTTTGGTCCCAATGATACGACCACGGCGCTCGA ATCAAGGCACGGCGCTGGCTCTGCTCCGCAGGCGGATCAACGCTGCTCAC GTGCTGAGGCCAGGACCACCGCTGCGGCTGGCGGCTGTGCTGCGATTATG CTATCATGTGCAACAGCGCTTGCACACATGATATGATGGTATGATGCTGG AAACGCGCCCTTTGCTGTTGAAGTTGACCCGCCACTTGTTTGTCATTGAC GCGGACCGCCTCGCCTGCCCAGTAGGCTGGCCCATGTAGATGTGCATGAC AATGCTTCGCGTAGTTCGCAGCAGCATGTCATCTTTTTAAAGACGTGTAG TCGAAGGGCAGATGCACAGGCGCACCAAGCTTCACGTTTACAGCCTGGCC TTCTGATGGGAATGGTTGTTTCAGTCACGCTCAGCTAACCTGTGACCGAA TAGGCGACCGATTCAAACAAGAGACTGTCGCCCATGCGCTGTCACTTTCT GCCCTCGCCTGTCGCTTGCGCCCCGCACAACCTGCGCACGTGCCACGAGC ACCATGGCGGTTTGCTCACAAAACCGCACTGCGGCCAACCCCATCTGCTG TTCCATCATTGTATCGAGTGCAGTGCGCCGCGCTCGAGGCTTTGAACAGC GAAGGTGATGAACGAGCGTCTGGTCTATTCTGATCCCTTCCCTCAGGAAA GTGTGGCTTATTAAGCCCGAGGAGGGCCTCAGCACGCCCATGGTGTTTAA GCACCTGGACTACAATGAACTGTCCTCAGAAGACCCCCTGGAGCTGCTCA AGAGCTTCCAAGACAAGGTGCGGAGTGAGCCATTTCACCTGCCATGTTCA GGCGTGCTGCAATGGGCAAGCGGCATGTTTGTGCAGGTATACAGCTTGTA TTTTGTGATGGCAGCAGACGACTGTCAGGGTCAAGGGGGAGCGTGTGGCT TGACCAGCTGCGCAGCATGACGCGCGATGTGCATCGCTGCGAATGACATC ATGCTAAACTTGAAGTCAGTTGTTGAATTTCAGCTCAACTGACCGATGAG TGTCGCATCGCCGGGCCGGGTTGCACCGCTGCAGCCATGGCAAAGTAATG GTCCCACGCGTGGCATCAAACGGTTGCAGCCATGGCCACCTCGTTCCGGA GATGCATCCCCGCCGCGCAGCGCATGACAACACCCATTCCTCGCCTATGA GCTGCATGTACCGCTGTGACACAGTCGCCCTAATCAGTGCCATTGCGTGA GCACGTCTTCCACGCAGGGCACACTTGAACACGACATTGTACTTGCCTGC TTCTCTCTTTTTCTGCCTCTGATGCTTTGGTCAGCTCCAGGGCGGCGGGC TTCCCGCTGCCCCCTGCTTGCTGTTGAGCGCTGTCAAACGCAGCGTCCTC AGCGTGGTGCATTCGGTGAACTAACCCGATTGAGCCTTTGTGGCCCGCCG TACCCTTTCTTGTTGGGTGAAATGGCAGGGTATCGAGGGCGCCACGTACC TCAACGACCTGGAGCCGCCGGCGTTCAAGGCCCTGCCCATGCTCAAGCAG ATGAAGCAGGACATGCAGGCAGCCGGCTTCAAGGTGCGCTGGCCTGTTAT TCATGGATGTGCAATGTCGCATGCCCAGCCTGGCCTGTTGGCCATGCATT CGTGATGTGAATGTCGCATGCCCAGCCTGGCCTGTTCGCCATGTCCAGTA CAGTTGCTGCATCAGGATGGCAGGCGAGCTGCCGAGCGGGTCTGCCTTGA GGGTTAGGGTGAGGTTTAGGGTTGCAATTGGGATTGGGGTCAATGCTACG ACACGTTGGTTTATTCAATGTCTGTAGGAGCCGTTGCTGCGACCGCGCTA CGCATGGTGCGCACTGCCACGTGGCAGACACCAAGCGCCAGGGGAGTAGC AATGAGCCAATGGTCAATGGCTAATATTGCTCTTCATGAGACTTACAAGG GCCTGCCAGTCCATGAATGTGGCTCTCAGGGACTCAGGTGCTCATCGCAA CGTGTGACCCCTGGCCCCGGTGATGCAACCATTCGTTGCTGGTTGGCAAG CGCCCCGCAGTCAGCTTCCATTGCTCTGTGGCAAATGTGAAGTTGTGCCA TGCTTTTGTGGCACAGGCCAGCGATCATACATATCGGCATCAGCTCGCAA CGGCTGGCGCCTGGTAGCCACGGCTGCTCTGCCGCTGACTGCAGCAGCAG TCAGTGCAGTCAAGCCTCGTGCATGCTGCTGCCGGCTGCGGAGTCAAAGT GCGATGTAAAACTCACAAGCATGTATCACAGCGCACACTGCCATGCATCT GCATCGTGATGTCGAGCGCTGTCTCACCACATATATATCAGGCGCTGCGC CAACTACTTACAGTAGCGCTGTGAACCGGAGCGCTCCGCTTTTGTAGCAT GACAGGCGTATTCTGCTGATTGCGCCTACCACACAGCGCGACGTGTCGGT GTGCGACGGTCACCGGCCGTGGACGCAACCCACCAAATTCAGAGCGCTGC AGTCCGGTAAACACGTGTGAAGATCTCATGGTTTGAGCCCCCTGCTCAGC CTACTGTGCCCTGCCCCTTGCCTTTGACTGCCACTATCGCTGTGCTGCGA TGCCGCCGCCGCGTCGCAGGTGGTTCTCATGTCGGGCAGCGGCACCACAC TCTTCGCGCTCGGCGACCCGGCCGACAGGGACTGGCCCATTGTGTTCACG CGCAAGTGGGGCTGCAACATCTGGCGCACCGAGTTCATTAACCGCCCCGA GGGCGAGCACCTGTGGTACCGGCAGGAGCGGCCGTACGGCGCAGAGCACA AATAA
back to top

Coding sequence (CDS) from alignment at Contig_203:31609..36013-

>mRNA_15749 ID=mRNA_15749|Name=jgi.p|Trimin1|179879|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=972bp|location=Sequence derived from alignment at Contig_203:31609..36013- (Tribonema minus UTEX_B_3156 )
ATGCAGTTCTCAACGGCTTCGCAGGACCTCACGGACGTGAGGACGGGCGC
TCACCAGCAGTGGGACCTGGAGCTGTTCAGCCCTGCCAAGATCAACCTGT
TCCTGCGCATCATGGGCAAGAGGCCGGACAATTACCACGAGCTGGCCAGC
CTGTTTCAGACCGTAGGATTTGGCGACAACCTGTACTTTGCGAAACTGCC
AGAGGACGCGCGCGCGGACGCATTTACGTGCACCGCGCCCAATGTCCCTT
CCGATAAGAGCAACCTCGTCATGAAGGCGCTGGACCTGTTCCGCGCCAAG
ACGGGCACGCACCAGTTCTTCAGGGTGCACCTGGACAAGCTCATACCGGC
GCAGGCGGGCATGGGCGGCGGCTCGGGCGACGCGGCGACGACGCTGTTCG
CGGCGAACGAACTCACGGGGTGCCCCGCGACCCCGGAGCAGCTGGTCGCG
TGGTCGGGGGACCTGGGGAGCGACATTACGTTTTTCCTGAGCAGCGGGAC
GTGCTACTGCACGGGGCGCGGCGAGGTGCTGCACCCGCAGCCCAACATTC
AGGCGTACAAGAAAGTGTGGCTTATTAAGCCCGAGGAGGGCCTCAGCACG
CCCATGGTGTTTAAGCACCTGGACTACAATGAACTGTCCTCAGAAGACCC
CCTGGAGCTGCTCAAGAGCTTCCAAGACAAGGGTATCGAGGGCGCCACGT
ACCTCAACGACCTGGAGCCGCCGGCGTTCAAGGCCCTGCCCATGCTCAAG
CAGATGAAGCAGGACATGCAGGCAGCCGGCTTCAAGGTGGTTCTCATGTC
GGGCAGCGGCACCACACTCTTCGCGCTCGGCGACCCGGCCGACAGGGACT
GGCCCATTGTGTTCACGCGCAAGTGGGGCTGCAACATCTGGCGCACCGAG
TTCATTAACCGCCCCGAGGGCGAGCACCTGTGGTACCGGCAGGAGCGGCC
GTACGGCGCAGAGCACAAATAA
back to top