Trimin1|354005|estExt_Genemark1.C_Ctg_2020036 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|354005
Unique Name	Trimin1\|354005\|estExt_Genemark1.C_Ctg_2020036
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	362

Homology

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 477 bits (1227), Expect = 4.110e-166
Identity = 361/361 (100.00%), Postives = 361/361 (100.00%), Query Frame = 0

Query:    1 MAEDDDALFAAFLGEIKAVDAPPAEXXXXXXXXPADAALAGTKRTAEQAMGAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPALEQQKSPGTSPXXXXXXXXXXXXXXXXXXXXXXXXPMLPPEVATSHPMNGSGGLPQPGFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPSGYLYDPFAXXXXXXXXXXXXXXXXXXXXXXXXXXPKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361
            MAEDDDALFAAFLGEIKAVDAPPAEXXXXXXXXPADAALAGTKRTAEQAMGAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPALEQQKSPGTSPXXXXXXXXXXXXXXXXXXXXXXXXPMLPPEVATSHPMNGSGGLPQPGFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPSGYLYDPFAXXXXXXXXXXXXXXXXXXXXXXXXXXPKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL
Sbjct:    1 MAEDDDALFAAFLGEIKAVDAPPAEXXXXXXXXPADAALAGTKRTAEQAMGAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPALEQQKSPGTSPXXXXXXXXXXXXXXXXXXXXXXXXPMLPPEVATSHPMNGSGGLPQPGFPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYPSGYLYDPFAXXXXXXXXXXXXXXXXXXXXXXXXXXPKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 187 bits (476), Expect = 3.970e-51
Identity = 92/127 (72.44%), Postives = 104/127 (81.89%), Query Frame = 0

Query:  235 KFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361
            KF RV GG +W+D TL EWPEND+RLFVGDLGNEVTD+NLA AF  Y SF KAKV+REK N KSKGYGFVSF DG DM++ALRE+ GKYLGNRPMKISKS+W ER++KEV+KK       KKALGLL
Sbjct:  410 KFKRVAGGKSWEDETLAEWPENDYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDGMDMLKALREQQGKYLGNRPMKISKSTWKERDVKEVKKKTXXXXXVKKALGLL 536

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: V4B0Y0_LOTGI (RNA-binding protein 42 n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4B0Y0_LOTGI)

HSP 1 Score: 171 bits (432), Expect = 4.570e-49
Identity = 83/127 (65.35%), Postives = 100/127 (78.74%), Query Frame = 0

Query:  234 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 360
            KKFVR   GTTW+D TL+EW  +DFR+F GDLGNEV+DE+LA AFS Y SF KAK+VR++ +NKSKGYGFVSF D  D  RA+R+ NGKY+GNRP+K+ KS+W +RNI  VRKKEK    EKK LGL
Sbjct:   16 KKFVRTAAGTTWEDQTLSEWDNDDFRMFCGDLGNEVSDEHLARAFSKYPSFLKAKIVRDRRSNKSKGYGFVSFKDPGDFTRAMRDMNGKYVGNRPIKLRKSTWRDRNIDIVRKKEK----EKKRLGL 138

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A7S3JN71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JN71_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.820e-48
Identity = 79/124 (63.71%), Postives = 102/124 (82.26%), Query Frame = 0

Query:  237 VRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 360
            +R  GG TW+D +L+ WPENDFRLFVG+LGNEVTDE ++ AF++YAS  KAKV+REK +NKSKGYGFVSF D +D  +ALRE NGKY+GNRP K+ +S+W +R +KEVRKKEKK+ + KK+ G+
Sbjct:   58 IRHAGGKTWRDDSLDLWPENDFRLFVGNLGNEVTDEIVSHAFASYASLAKAKVIREKFSNKSKGYGFVSFLDPYDCAKALREMNGKYIGNRPCKLQRSNWKDRTLKEVRKKEKKDSKTKKSWGI 181

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A833WW49_PHYIN (RNA recognition motif-containing protein n=3 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WW49_PHYIN)

HSP 1 Score: 174 bits (441), Expect = 3.080e-48
Identity = 82/126 (65.08%), Postives = 102/126 (80.95%), Query Frame = 0

Query:  233 PKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKAL 358
            PK+ +R+ GG  W+DPTL EWP+NDFRLF GDLGNEV+DE LA +FS YASFQ+A+VVR+K  +KS+GYGFVSFAD FD  +ALRE NGKY+GNRP+K+SKS W ERN+   +KK +K KR+K  L
Sbjct:  180 PKRNLRLAGGQVWEDPTLEEWPDNDFRLFCGDLGNEVSDELLAHSFSQYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVKLSKSKWQERNMDVAKKKLRKRKRDKHHL 305

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A329SBS0_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329SBS0_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.340e-48
Identity = 82/126 (65.08%), Postives = 101/126 (80.16%), Query Frame = 0

Query:  233 PKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKAL 358
            PK+ +R+ GG  W+DPTL EWP+NDFRLF GDLGNEV+DE LA +FS YASFQ+A+VVR+K  +KS+GYGFVSF D FD  +ALRE NGKY+GNRP+K+SKS W ERNI   +KK +K KR+K  L
Sbjct:  183 PKRNLRLAGGEVWEDPTLEEWPDNDFRLFCGDLGNEVSDELLAHSFSQYASFQRARVVRDKLTHKSRGYGFVSFTDPFDCAKALREMNGKYIGNRPVKLSKSKWQERNIDVAKKKMRKRKRDKHHL 308

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: H3GGQ7_PHYRM (RRM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGQ7_PHYRM)

HSP 1 Score: 173 bits (439), Expect = 5.040e-48
Identity = 81/125 (64.80%), Postives = 102/125 (81.60%), Query Frame = 0

Query:  234 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKAL 358
            K+ +R+ GG  W+DPTL +WP+NDFRLF GDLGNEV+DE LA +F+AYASFQ+A+VVR+K  +KS+GYGFVSFAD FD  +ALRE NGKY+GNRP+K+SKS W ERNI   +KK +K KR+K  L
Sbjct:  174 KRHLRLAGGAVWEDPTLEDWPDNDFRLFCGDLGNEVSDELLAHSFAAYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVKLSKSKWQERNIDVAKKKIRKRKRDKHHL 298

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A2H2I8F8_CAEJA (RNA-binding protein 42 n=1 Tax=Caenorhabditis japonica TaxID=281687 RepID=A0A2H2I8F8_CAEJA)

HSP 1 Score: 172 bits (437), Expect = 8.480e-48
Identity = 84/128 (65.62%), Postives = 102/128 (79.69%), Query Frame = 0

Query:  234 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGLL 361
            KKFVR GGG  W+DP+L EW ENDFR+F GDLGNEV+DE LA+AF  Y SFQKAKVVRE  +NKSKGYGFVSF D  D VRA+RE +GKY+GNRP+K+ KSSW ERNI  +++K    K++KK LG++
Sbjct:  170 KKFVRSGGGQVWEDPSLAEWDENDFRVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRSNKSKGYGFVSFRDSEDYVRAMREMDGKYVGNRPIKLRKSSWKERNIDVIKQK----KKQKKELGII 293

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A0B7BTA1_9EUPU (RNA-binding protein 42 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7BTA1_9EUPU)

HSP 1 Score: 170 bits (430), Expect = 9.340e-48
Identity = 79/127 (62.20%), Postives = 100/127 (78.74%), Query Frame = 0

Query:  234 KKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKALGL 360
            KKF+R+   TTW+DPTL++W ++DFR+F GDLGNEVTDE L  AF+ Y SF KAKV+R++  NK+KGYGFVSF D  D  RA+RE NGKY+GNRP+K+ KSSW +RN++ VRKK+K    EKK LGL
Sbjct:   91 KKFLRLAANTTWEDPTLSDWQQDDFRMFCGDLGNEVTDETLVRAFNKYPSFLKAKVIRDRRTNKTKGYGFVSFKDPLDFARAMREMNGKYVGNRPIKLRKSSWRDRNLEVVRKKDK----EKKKLGL 213

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BLAST of jgi.p|Trimin1|354005 vs. uniprot
Match: A0A662Y9J8_9STRA (RRM domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y9J8_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.170e-47
Identity = 81/126 (64.29%), Postives = 102/126 (80.95%), Query Frame = 0

Query:  233 PKKFVRVGGGTTWQDPTLNEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKKNKREKKAL 358
            PK  +R+GGG  W+DPTL +WPENDFRLF GDLGNEV+DE LA +F+ YASFQ+A+VVR+K  +KS+GYGFVSFAD FD  +ALRE NGKY+GNRP+K+SKS W +RN++  +KK  K KR+K  L
Sbjct:  232 PKHHLRLGGGAVWEDPTLADWPENDFRLFCGDLGNEVSDELLAHSFAKYASFQRARVVRDKLTHKSRGYGFVSFADPFDCAKALREMNGKYIGNRPVKLSKSKWEDRNLEVAKKKMSKRKRDKHHL 357

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|354005 vs. uniprot

BLAST of jgi.p|Trimin1|354005 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A836CHC6_9STRA	4.110e-166	100.00	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A6H5KAJ6_9PHAE	3.970e-51	72.44	RRM domain-containing protein n=1 Tax=Ectocarpus s...	[more]
V4B0Y0_LOTGI	4.570e-49	65.35	RNA-binding protein 42 n=1 Tax=Lottia gigantea Tax...	[more]
A0A7S3JN71_9STRA	1.820e-48	63.71	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A833WW49_PHYIN	3.080e-48	65.08	RNA recognition motif-containing protein n=3 Tax=P...	[more]
A0A329SBS0_9STRA	3.340e-48	65.08	RRM domain-containing protein n=2 Tax=Phytophthora...	[more]
H3GGQ7_PHYRM	5.040e-48	64.80	RRM domain-containing protein n=1 Tax=Phytophthora...	[more]
A0A2H2I8F8_CAEJA	8.480e-48	65.63	RNA-binding protein 42 n=1 Tax=Caenorhabditis japo...	[more]
A0A0B7BTA1_9EUPU	9.340e-48	62.20	RNA-binding protein 42 (Fragment) n=1 Tax=Arion vu...	[more]
A0A662Y9J8_9STRA	1.170e-47	64.29	RRM domain-containing protein n=1 Tax=Nothophytoph...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 259..332 e-value: 4.0E-20 score: 82.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 260..329 e-value: 5.0E-17 score: 61.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 258..336 score: 16.227247
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 178..333 e-value: 3.0E-21 score: 77.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..228
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 19..251
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 335..361
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 180..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 153..179
None	No IPR available	PANTHER	PTHR47640:SF11	RNA-BINDING PROTEIN 42-LIKE	coord: 144..356
None	No IPR available	PANTHER	PTHR47640	TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED	coord: 144..356
IPR034215	RBM42, RNA recognition motif	CDD	cd12383	RRM_RBM42	coord: 252..334 e-value: 3.6376E-49 score: 158.155
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 244..334

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_202	contig	Contig_202:211715..212800 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|354005	mRNA_15452	Tribonema minus UTEX_B_3156	mRNA	Contig_202 211710..213181 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|354005|estExt_Genemark1.C_Ctg_2020036 ID=Trimin1|354005|estExt_Genemark1.C_Ctg_2020036|Name=jgi.p|Trimin1|354005|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=362bp
MAEDDDALFAAFLGEIKAVDAPPAEEQQQKQQQPADAALAGTKRTAEQAM
GAAAAGEASSRPQKSFVSAPARPSIVAAPVPRAAAKQASPVPEQASLPAL
EQQKSPGTSPPPPQLPQQQQPHSAAAAASPSPPAPMLPPEVATSHPMNGS
GGLPQPGFPPPPPPMMVPPPVPPPQPFMPSYQQQYQQQQQQQQGGYPSGY
LYDPFAAAAAAAAPQPQQQQQQQQEGGGSAKKPKKFVRVGGGTTWQDPTL
NEWPENDFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKG
YGFVSFADGFDMVRALREKNGKYLGNRPMKISKSSWHERNIKEVRKKEKK
NKREKKALGLL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR034215	RBM42_RRM
IPR035979	RBD_domain_sf